RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 DCAF1Q9Y4B6 1507 aa17.36■□□□□ 0.37
CSPG4P12-202ENST00000559989 CALD1Q05682 793 aaKnown RBP17.35■□□□□ 0.37
CSPG4P12-202ENST00000559989 TMX4Q9H1E5 349 aaPredicted RBP17.35■□□□□ 0.37
CSPG4P12-202ENST00000559989 GPATCH3Q96I76 525 aa17.35■□□□□ 0.37
CSPG4P12-202ENST00000559989 FBXO3Q9UK99 471 aa17.34■□□□□ 0.37
CSPG4P12-202ENST00000559989 TPD52L1Q16890 204 aaPredicted RBP17.34■□□□□ 0.37
CSPG4P12-202ENST00000559989 SENP3Q9H4L4 574 aaPredicted RBP17.34■□□□□ 0.37
CSPG4P12-202ENST00000559989 HMMRO75330 724 aa17.33■□□□□ 0.36
CSPG4P12-202ENST00000559989 TPM1P09493 284 aa17.33■□□□□ 0.36
CSPG4P12-202ENST00000559989 MTUS2Q5JR59 1369 aa17.32■□□□□ 0.36
CSPG4P12-202ENST00000559989 APPP05067 770 aa17.31■□□□□ 0.36
CSPG4P12-202ENST00000559989 LMOD2Q6P5Q4 547 aa17.31■□□□□ 0.36
CSPG4P12-202ENST00000559989 U2SURPO15042 1029 aaKnown RBP17.3■□□□□ 0.36
CSPG4P12-202ENST00000559989 B4GALNT3Q6L9W6 998 aa17.3■□□□□ 0.36
CSPG4P12-202ENST00000559989 TAF7LQ5H9L4 462 aa17.3■□□□□ 0.36
CSPG4P12-202ENST00000559989 CCAR2Q8N163 923 aaKnown RBP17.3■□□□□ 0.36
CSPG4P12-202ENST00000559989 PES1O00541 588 aaKnown RBP17.28■□□□□ 0.36
CSPG4P12-202ENST00000559989 IPO8O15397 1037 aaKnown RBP17.27■□□□□ 0.36
CSPG4P12-202ENST00000559989 CDR1P51861 262 aa17.27■□□□□ 0.36
CSPG4P12-202ENST00000559989 MAP7D2Q96T17 732 aa17.27■□□□□ 0.35
CSPG4P12-202ENST00000559989 POGKQ9P215 609 aa17.26■□□□□ 0.35
CSPG4P12-202ENST00000559989 RTF1Q92541 710 aaKnown RBP17.26■□□□□ 0.35
CSPG4P12-202ENST00000559989 AK7Q96M32 723 aa17.26■□□□□ 0.35
CSPG4P12-202ENST00000559989 KIF3AQ9Y496 699 aa17.26■□□□□ 0.35
CSPG4P12-202ENST00000559989 GOLGA6L19H0YKK7 550 aa17.25■□□□□ 0.35
CSPG4P12-202ENST00000559989 MARCH6O60337 910 aa17.25■□□□□ 0.35
CSPG4P12-202ENST00000559989 VSIG10Q8N0Z9 540 aa17.25■□□□□ 0.35
CSPG4P12-202ENST00000559989 SENP3-EIF4A1A0A087X0R7 540 aa17.24■□□□□ 0.35
CSPG4P12-202ENST00000559989 CARD11Q9BXL7 1154 aa17.24■□□□□ 0.35
CSPG4P12-202ENST00000559989 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.24■□□□□ 0.35
CSPG4P12-202ENST00000559989 VPS53Q5VIR6 699 aa17.24■□□□□ 0.35
CSPG4P12-202ENST00000559989 PABPN1Q86U42 306 aaKnown RBP eCLIP17.23■□□□□ 0.35
CSPG4P12-202ENST00000559989 TCERG1O14776 1098 aaKnown RBP17.23■□□□□ 0.35
CSPG4P12-202ENST00000559989 CCDC191Q8NCU4 936 aa17.23■□□□□ 0.35
CSPG4P12-202ENST00000559989 RGL3Q3MIN7 710 aa17.22■□□□□ 0.35
CSPG4P12-202ENST00000559989 RUFY1Q96T51 708 aa17.22■□□□□ 0.35
CSPG4P12-202ENST00000559989 ANO8Q9HCE9 1232 aaPredicted RBP17.22■□□□□ 0.35
CSPG4P12-202ENST00000559989 SF3A1Q15459 793 aaKnown RBP17.22■□□□□ 0.35
CSPG4P12-202ENST00000559989 GORABQ5T7V8 394 aa17.21■□□□□ 0.35
CSPG4P12-202ENST00000559989 DDX11L8A8MPP1 907 aa17.21■□□□□ 0.35
CSPG4P12-202ENST00000559989 CC2D1BQ5T0F9 858 aaKnown RBP17.21■□□□□ 0.35
CSPG4P12-202ENST00000559989 SLKQ9H2G2 1235 aaPredicted RBP17.21■□□□□ 0.35
CSPG4P12-202ENST00000559989 KIF16BQ96L93 1317 aa17.2■□□□□ 0.34
CSPG4P12-202ENST00000559989 ACBD3Q9H3P7 528 aa17.2■□□□□ 0.34
CSPG4P12-202ENST00000559989 RDXP35241 583 aaKnown RBP17.19■□□□□ 0.34
CSPG4P12-202ENST00000559989 RWDD1Q9H446 243 aaPredicted RBP17.19■□□□□ 0.34
CSPG4P12-202ENST00000559989 DCTN1Q14203 1278 aa17.18■□□□□ 0.34
CSPG4P12-202ENST00000559989 PMFBP1Q8TBY8 1022 aa17.17■□□□□ 0.34
CSPG4P12-202ENST00000559989 APBB1O00213 710 aa17.17■□□□□ 0.34
CSPG4P12-202ENST00000559989 IPO7O95373 1038 aaKnown RBP17.17■□□□□ 0.34
CSPG4P12-202ENST00000559989 CHMP4CQ96CF2 233 aa17.17■□□□□ 0.34
CSPG4P12-202ENST00000559989 RBM19Q9Y4C8 960 aaKnown RBP17.17■□□□□ 0.34
CSPG4P12-202ENST00000559989 TRIM6-TRIM34B2RNG4 842 aa17.16■□□□□ 0.34
CSPG4P12-202ENST00000559989 G3V3G9 751 aa17.16■□□□□ 0.34
CSPG4P12-202ENST00000559989 DCAF8Q5TAQ9 597 aa17.16■□□□□ 0.34
CSPG4P12-202ENST00000559989 RSF1Q96T23 1441 aaPredicted RBP17.16■□□□□ 0.34
CSPG4P12-202ENST00000559989 RRP7BPQ9NSQ0 103 aa17.16■□□□□ 0.34
CSPG4P12-202ENST00000559989 ST18O60284 1047 aa17.16■□□□□ 0.34
CSPG4P12-202ENST00000559989 CHMP4AQ9BY43 222 aa17.16■□□□□ 0.34
CSPG4P12-202ENST00000559989 CWC15Q9P013 229 aaKnown RBP17.15■□□□□ 0.34
CSPG4P12-202ENST00000559989 H3BQV1 296 aa17.15■□□□□ 0.34
CSPG4P12-202ENST00000559989 IFFO2Q5TF58 517 aa17.15■□□□□ 0.34
CSPG4P12-202ENST00000559989 HDAC5Q9UQL6 1122 aa17.14■□□□□ 0.34
CSPG4P12-202ENST00000559989 CNKSR2Q8WXI2 1034 aa17.14■□□□□ 0.33
CSPG4P12-202ENST00000559989 TCEAL9Q9UHQ7 104 aa17.14■□□□□ 0.33
CSPG4P12-202ENST00000559989 ANKRD20A12PQ8NF67 263 aa17.13■□□□□ 0.33
CSPG4P12-202ENST00000559989 BECN2A8MW95 431 aa17.13■□□□□ 0.33
CSPG4P12-202ENST00000559989 PCMTD1Q96MG8 357 aaPredicted RBP17.13■□□□□ 0.33
CSPG4P12-202ENST00000559989 ZNF592Q92610 1267 aa17.13■□□□□ 0.33
CSPG4P12-202ENST00000559989 WWC1Q8IX03 1113 aa17.13■□□□□ 0.33
CSPG4P12-202ENST00000559989 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.12■□□□□ 0.33
CSPG4P12-202ENST00000559989 SKOR2Q2VWA4 1001 aaPredicted RBP17.12■□□□□ 0.33
CSPG4P12-202ENST00000559989 STK11IPQ8N1F8 1099 aa17.11■□□□□ 0.33
CSPG4P12-202ENST00000559989 MFAP1P55081 439 aaKnown RBP17.11■□□□□ 0.33
CSPG4P12-202ENST00000559989 ITPRIPQ8IWB1 547 aa17.11■□□□□ 0.33
CSPG4P12-202ENST00000559989 ARGLU1Q9NWB6 273 aaPredicted RBP17.11■□□□□ 0.33
CSPG4P12-202ENST00000559989 ATP6V1DQ9Y5K8 247 aa17.1■□□□□ 0.33
CSPG4P12-202ENST00000559989 CCDC180Q9P1Z9 1646 aa17.1■□□□□ 0.33
CSPG4P12-202ENST00000559989 TMF1P82094 1093 aa17.1■□□□□ 0.33
CSPG4P12-202ENST00000559989 CCDC47Q96A33 483 aaKnown RBP17.1■□□□□ 0.33
CSPG4P12-202ENST00000559989 HOOK1Q9UJC3 728 aaKnown RBP17.09■□□□□ 0.33
CSPG4P12-202ENST00000559989 CHMP3Q9Y3E7 222 aa17.09■□□□□ 0.33
CSPG4P12-202ENST00000559989 ZRSR2Q15696 482 aaKnown RBP17.08■□□□□ 0.33
CSPG4P12-202ENST00000559989 AKAP17AQ02040 695 aaKnown RBP17.08■□□□□ 0.33
CSPG4P12-202ENST00000559989 MYO6Q9UM54 1294 aa17.08■□□□□ 0.32
CSPG4P12-202ENST00000559989 H0YHG0 523 aa17.07■□□□□ 0.32
CSPG4P12-202ENST00000559989 ODF2Q5BJF6 829 aa17.07■□□□□ 0.32
CSPG4P12-202ENST00000559989 FAM184AQ8NB25 1140 aa17.07■□□□□ 0.32
CSPG4P12-202ENST00000559989 HOMER1Q86YM7 354 aa17.07■□□□□ 0.32
CSPG4P12-202ENST00000559989 HSP90B2PQ58FF3 399 aa17.06■□□□□ 0.32
CSPG4P12-202ENST00000559989 IPO9Q96P70 1041 aaKnown RBP17.06■□□□□ 0.32
CSPG4P12-202ENST00000559989 NEXNQ0ZGT2 675 aa17.06■□□□□ 0.32
CSPG4P12-202ENST00000559989 MORC1Q86VD1 984 aa17.05■□□□□ 0.32
CSPG4P12-202ENST00000559989 HDGFP51858 240 aaKnown RBP17.03■□□□□ 0.32
CSPG4P12-202ENST00000559989 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.03■□□□□ 0.32
CSPG4P12-202ENST00000559989 CCDC173Q0VFZ6 552 aa17.03■□□□□ 0.32
CSPG4P12-202ENST00000559989 SPAG9O60271 1321 aaKnown RBP17.03■□□□□ 0.32
CSPG4P12-202ENST00000559989 TOMM22Q9NS69 142 aa17.02■□□□□ 0.32
CSPG4P12-202ENST00000559989 NOL8Q76FK4 1167 aaKnown RBP17.02■□□□□ 0.31
CSPG4P12-202ENST00000559989 CT47A1Q5JQC4 288 aaPredicted RBP17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms