RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 YEATS2Q9ULM3 1422 aa21.75■■□□□ 1.07
TPM1-220ENST00000559556 LMTK3Q96Q04 1460 aa21.75■■□□□ 1.07
TPM1-220ENST00000559556 PREX2Q70Z35 1606 aa21.74■■□□□ 1.07
TPM1-220ENST00000559556 UBTFP17480 764 aaKnown RBP21.74■■□□□ 1.07
TPM1-220ENST00000559556 ARID4BQ4LE39 1312 aaPredicted RBP21.74■■□□□ 1.07
TPM1-220ENST00000559556 CDC42BPAQ5VT25 1732 aa21.72■■□□□ 1.07
TPM1-220ENST00000559556 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
TPM1-220ENST00000559556 KDM5CP41229 1560 aa21.72■■□□□ 1.07
TPM1-220ENST00000559556 SCAPERQ9BY12 1400 aa21.71■■□□□ 1.07
TPM1-220ENST00000559556 TROQ12816 1431 aaPredicted RBP21.7■■□□□ 1.06
TPM1-220ENST00000559556 ITSN2Q9NZM3 1697 aa21.69■■□□□ 1.06
TPM1-220ENST00000559556 SETD1BQ9UPS6 1966 aaKnown RBP21.69■■□□□ 1.06
TPM1-220ENST00000559556 PREX1Q8TCU6 1659 aa21.69■■□□□ 1.06
TPM1-220ENST00000559556 ARHGAP5Q13017 1502 aa21.68■■□□□ 1.06
TPM1-220ENST00000559556 EHMT2Q96KQ7 1210 aa21.67■■□□□ 1.06
TPM1-220ENST00000559556 ARHGEF12Q9NZN5 1544 aa21.66■■□□□ 1.06
TPM1-220ENST00000559556 ZNF518AQ6AHZ1 1483 aa21.66■■□□□ 1.06
TPM1-220ENST00000559556 CLIP1P30622 1438 aa21.66■■□□□ 1.06
TPM1-220ENST00000559556 CDK11AQ9UQ88 783 aaPredicted RBP21.65■■□□□ 1.06
TPM1-220ENST00000559556 CCDC18Q5T9S5 1454 aa21.64■■□□□ 1.06
TPM1-220ENST00000559556 ABCA6Q8N139 1617 aa21.64■■□□□ 1.05
TPM1-220ENST00000559556 DIP2CQ9Y2E4 1556 aa21.64■■□□□ 1.05
TPM1-220ENST00000559556 ATP10AO60312 1499 aa21.64■■□□□ 1.05
TPM1-220ENST00000559556 C9orf84Q5VXU9 1444 aa21.63■■□□□ 1.05
TPM1-220ENST00000559556 REREQ9P2R6 1566 aa21.63■■□□□ 1.05
TPM1-220ENST00000559556 ATP1B4Q9UN42 357 aaPredicted RBP21.62■■□□□ 1.05
TPM1-220ENST00000559556 ABCC1P33527 1531 aa21.61■■□□□ 1.05
TPM1-220ENST00000559556 EFCAB2Q5VUJ9 269 aa21.61■■□□□ 1.05
TPM1-220ENST00000559556 CASKIN1Q8WXD9 1431 aa21.61■■□□□ 1.05
TPM1-220ENST00000559556 KIDINS220Q9ULH0 1771 aa21.59■■□□□ 1.05
TPM1-220ENST00000559556 FYCO1Q9BQS8 1478 aa21.58■■□□□ 1.05
TPM1-220ENST00000559556 C3P01024 1663 aa21.57■■□□□ 1.04
TPM1-220ENST00000559556 STRCQ7RTU9 1775 aa21.53■■□□□ 1.04
TPM1-220ENST00000559556 MLH3Q9UHC1 1453 aa21.52■■□□□ 1.04
TPM1-220ENST00000559556 SAMD9LQ8IVG5 1584 aa21.5■■□□□ 1.03
TPM1-220ENST00000559556 MLECQ14165 292 aa21.5■■□□□ 1.03
TPM1-220ENST00000559556 FBXO41Q8TF61 875 aa21.49■■□□□ 1.03
TPM1-220ENST00000559556 AGLP35573 1532 aa21.49■■□□□ 1.03
TPM1-220ENST00000559556 MROH2AA6NES4 1674 aa21.48■■□□□ 1.03
TPM1-220ENST00000559556 AFAP1Q8N556 730 aa21.46■■□□□ 1.03
TPM1-220ENST00000559556 TRAPPC8Q9Y2L5 1435 aa21.46■■□□□ 1.03
TPM1-220ENST00000559556 HSPA2P54652 639 aa21.45■■□□□ 1.02
TPM1-220ENST00000559556 SUPT6HQ7KZ85 1726 aaKnown RBP21.45■■□□□ 1.02
TPM1-220ENST00000559556 PLPPR3Q6T4P5 718 aa21.44■■□□□ 1.02
TPM1-220ENST00000559556 SYCP2Q9BX26 1530 aa21.44■■□□□ 1.02
TPM1-220ENST00000559556 INO80Q9ULG1 1556 aaPredicted RBP21.42■■□□□ 1.02
TPM1-220ENST00000559556 ADGBQ8N7X0 1667 aa21.39■■□□□ 1.01
TPM1-220ENST00000559556 GPATCH8Q9UKJ3 1502 aaKnown RBP21.39■■□□□ 1.01
TPM1-220ENST00000559556 ATP7AQ04656 1500 aa21.37■■□□□ 1.01
TPM1-220ENST00000559556 PLXNC1O60486 1568 aa21.36■■□□□ 1.01
TPM1-220ENST00000559556 MYT1LQ9UL68 1186 aa21.36■■□□□ 1.01
TPM1-220ENST00000559556 CLTCQ00610 1675 aaKnown RBP21.36■■□□□ 1.01
TPM1-220ENST00000559556 UHRF1BP1Q6BDS2 1440 aa21.36■■□□□ 1.01
TPM1-220ENST00000559556 CEBPAP49715 358 aaPredicted RBP21.34■■□□□ 1.01
TPM1-220ENST00000559556 TIAM1Q13009 1591 aa21.34■■□□□ 1.01
TPM1-220ENST00000559556 ZNF142P52746 1687 aaPredicted RBP21.33■■□□□ 1
TPM1-220ENST00000559556 PLEKHH2Q8IVE3 1493 aa21.32■■□□□ 1
TPM1-220ENST00000559556 CNTLNQ9NXG0 1405 aa21.32■■□□□ 1
TPM1-220ENST00000559556 EHBP1L1Q8N3D4 1523 aa21.32■■□□□ 1
TPM1-220ENST00000559556 KIAA1107Q9UPP5 1409 aa21.29■■□□□ 1
TPM1-220ENST00000559556 MYO3AQ8NEV4 1616 aa21.27■■□□□ 1
TPM1-220ENST00000559556 MTUS2Q5JR59 1369 aa21.24■□□□□ 0.99
TPM1-220ENST00000559556 CCNB3Q8WWL7 1395 aa21.24■□□□□ 0.99
TPM1-220ENST00000559556 CERKQ8TCT0 537 aa21.24■□□□□ 0.99
TPM1-220ENST00000559556 ZNF777Q9ULD5 760 aaPredicted RBP21.24■□□□□ 0.99
TPM1-220ENST00000559556 SPAG9O60271 1321 aaKnown RBP21.24■□□□□ 0.99
TPM1-220ENST00000559556 NPATQ14207 1427 aa21.22■□□□□ 0.99
TPM1-220ENST00000559556 A2MP01023 1474 aa21.22■□□□□ 0.99
TPM1-220ENST00000559556 ESF1Q9H501 851 aaKnown RBP21.22■□□□□ 0.99
TPM1-220ENST00000559556 HNRNPMP52272 730 aaKnown RBP eCLIP21.21■□□□□ 0.99
TPM1-220ENST00000559556 PTPRTO14522 1441 aa21.21■□□□□ 0.99
TPM1-220ENST00000559556 CFDP1Q9UEE9 299 aaPredicted RBP21.2■□□□□ 0.98
TPM1-220ENST00000559556 DMRT2Q9Y5R5 561 aa21.2■□□□□ 0.98
TPM1-220ENST00000559556 CEP162Q5TB80 1403 aa21.2■□□□□ 0.98
TPM1-220ENST00000559556 CAMSAP1Q5T5Y3 1602 aa21.19■□□□□ 0.98
TPM1-220ENST00000559556 NCOA1Q15788 1441 aa21.19■□□□□ 0.98
TPM1-220ENST00000559556 MBD5Q9P267 1494 aa21.17■□□□□ 0.98
TPM1-220ENST00000559556 CEP170BQ9Y4F5 1589 aaPredicted RBP21.17■□□□□ 0.98
TPM1-220ENST00000559556 POLR1AO95602 1720 aaPredicted RBP21.17■□□□□ 0.98
TPM1-220ENST00000559556 LTBP4Q8N2S1 1624 aa21.16■□□□□ 0.98
TPM1-220ENST00000559556 ZMYM3Q14202 1370 aa21.13■□□□□ 0.97
TPM1-220ENST00000559556 RTEL1-TNFRSF6BF6WH68 1400 aa21.12■□□□□ 0.97
TPM1-220ENST00000559556 CAMSAP2Q08AD1 1489 aa21.12■□□□□ 0.97
TPM1-220ENST00000559556 ARHGEF5Q12774 1597 aa21.11■□□□□ 0.97
TPM1-220ENST00000559556 FAM135AQ9P2D6 1515 aa21.11■□□□□ 0.97
TPM1-220ENST00000559556 NCOA2Q15596 1464 aa21.11■□□□□ 0.97
TPM1-220ENST00000559556 IQSEC2Q5JU85 1478 aa21.1■□□□□ 0.97
TPM1-220ENST00000559556 PTPRKQ15262 1439 aa21.1■□□□□ 0.97
TPM1-220ENST00000559556 ZNF644Q9H582 1327 aaPredicted RBP21.09■□□□□ 0.97
TPM1-220ENST00000559556 CCDC141Q6ZP82 1450 aa21.09■□□□□ 0.97
TPM1-220ENST00000559556 PLA2R1Q13018 1463 aa21.08■□□□□ 0.97
TPM1-220ENST00000559556 DNMT1P26358 1616 aaKnown RBP21.07■□□□□ 0.96
TPM1-220ENST00000559556 CFAP65Q6ZU64 1925 aaKnown RBP21.06■□□□□ 0.96
TPM1-220ENST00000559556 KDM5DQ9BY66 1539 aa21.05■□□□□ 0.96
TPM1-220ENST00000559556 TCOF1Q13428 1488 aaKnown RBP21.05■□□□□ 0.96
TPM1-220ENST00000559556 RNF17Q9BXT8 1623 aaKnown RBP21.04■□□□□ 0.96
TPM1-220ENST00000559556 ZC3H13Q5T200 1668 aaKnown RBP21.04■□□□□ 0.96
TPM1-220ENST00000559556 PPP6R1Q9UPN7 881 aa21.03■□□□□ 0.96
TPM1-220ENST00000559556 MAST1Q9Y2H9 1570 aa21.02■□□□□ 0.96
TPM1-220ENST00000559556 DHX29Q7Z478 1369 aaKnown RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms