RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 EHMT2Q96KQ7 1210 aa16.5■□□□□ 0.23
USP3-207ENST00000558218 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
USP3-207ENST00000558218 KDM4FA0A1W2PPD8 638 aa16.47■□□□□ 0.23
USP3-207ENST00000558218 NEO1Q92859 1461 aa16.47■□□□□ 0.23
USP3-207ENST00000558218 ATP1B4Q9UN42 357 aaPredicted RBP16.42■□□□□ 0.22
USP3-207ENST00000558218 SAMD1Q6SPF0 538 aaPredicted RBP16.41■□□□□ 0.22
USP3-207ENST00000558218 HECW1Q76N89 1606 aa16.41■□□□□ 0.22
USP3-207ENST00000558218 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.38■□□□□ 0.21
USP3-207ENST00000558218 CDK13Q14004 1512 aaKnown RBP16.37■□□□□ 0.21
USP3-207ENST00000558218 CASKIN1Q8WXD9 1431 aa16.36■□□□□ 0.21
USP3-207ENST00000558218 RAPGEF3O95398 923 aa16.36■□□□□ 0.21
USP3-207ENST00000558218 PLCH2O75038 1416 aa16.36■□□□□ 0.21
USP3-207ENST00000558218 AKNAQ7Z591 1439 aa16.36■□□□□ 0.21
USP3-207ENST00000558218 ADGRL1O94910 1474 aa16.35■□□□□ 0.21
USP3-207ENST00000558218 FANCAO15360 1455 aa16.35■□□□□ 0.21
USP3-207ENST00000558218 CFAP74Q9C0B2 1584 aa16.34■□□□□ 0.21
USP3-207ENST00000558218 CLIP1P30622 1438 aa16.33■□□□□ 0.2
USP3-207ENST00000558218 TROQ12816 1431 aaPredicted RBP16.33■□□□□ 0.2
USP3-207ENST00000558218 DENND4BO75064 1496 aaPredicted RBP16.33■□□□□ 0.2
USP3-207ENST00000558218 APLP2Q06481 763 aa16.32■□□□□ 0.2
USP3-207ENST00000558218 CCDC18Q5T9S5 1454 aa16.32■□□□□ 0.2
USP3-207ENST00000558218 EFCAB2Q5VUJ9 269 aa16.32■□□□□ 0.2
USP3-207ENST00000558218 ABCB7O75027 752 aa16.31■□□□□ 0.2
USP3-207ENST00000558218 TTC37Q6PGP7 1564 aa16.3■□□□□ 0.2
USP3-207ENST00000558218 ATF5Q9Y2D1 282 aaPredicted RBP16.29■□□□□ 0.2
USP3-207ENST00000558218 DSG3P32926 999 aa16.28■□□□□ 0.2
USP3-207ENST00000558218 FYCO1Q9BQS8 1478 aa16.28■□□□□ 0.2
USP3-207ENST00000558218 MAGI2Q86UL8 1455 aa16.27■□□□□ 0.19
USP3-207ENST00000558218 KIF14Q15058 1648 aa16.27■□□□□ 0.19
USP3-207ENST00000558218 ILDR1Q86SU0 546 aaPredicted RBP16.26■□□□□ 0.19
USP3-207ENST00000558218 LRRIQ1Q96JM4 1722 aa16.25■□□□□ 0.19
USP3-207ENST00000558218 ZNF219Q9P2Y4 722 aaPredicted RBP16.25■□□□□ 0.19
USP3-207ENST00000558218 SCAPERQ9BY12 1400 aa16.25■□□□□ 0.19
USP3-207ENST00000558218 FRMPD1Q5SYB0 1578 aa16.25■□□□□ 0.19
USP3-207ENST00000558218 RICTORQ6R327 1708 aa16.25■□□□□ 0.19
USP3-207ENST00000558218 MYO5CQ9NQX4 1742 aa16.25■□□□□ 0.19
USP3-207ENST00000558218 PCF11O94913 1555 aaKnown RBP16.24■□□□□ 0.19
USP3-207ENST00000558218 ZMYM4Q5VZL5 1548 aa16.23■□□□□ 0.19
USP3-207ENST00000558218 POGZQ7Z3K3 1410 aa16.2■□□□□ 0.18
USP3-207ENST00000558218 ARID4BQ4LE39 1312 aaPredicted RBP16.19■□□□□ 0.18
USP3-207ENST00000558218 ARHGAP5Q13017 1502 aa16.19■□□□□ 0.18
USP3-207ENST00000558218 ARHGEF40Q8TER5 1519 aa16.18■□□□□ 0.18
USP3-207ENST00000558218 CEP162Q5TB80 1403 aa16.18■□□□□ 0.18
USP3-207ENST00000558218 ADAMTSL3P82987 1691 aa16.17■□□□□ 0.18
USP3-207ENST00000558218 ZNF518AQ6AHZ1 1483 aa16.16■□□□□ 0.18
USP3-207ENST00000558218 ZFYVE16Q7Z3T8 1539 aa16.16■□□□□ 0.18
USP3-207ENST00000558218 CDC42BPBQ9Y5S2 1711 aa16.15■□□□□ 0.18
USP3-207ENST00000558218 AFAP1Q8N556 730 aa16.14■□□□□ 0.17
USP3-207ENST00000558218 ATP10AO60312 1499 aa16.14■□□□□ 0.17
USP3-207ENST00000558218 BCORL1Q5H9F3 1711 aa16.14■□□□□ 0.17
USP3-207ENST00000558218 YEATS2Q9ULM3 1422 aa16.13■□□□□ 0.17
USP3-207ENST00000558218 PREX2Q70Z35 1606 aa16.13■□□□□ 0.17
USP3-207ENST00000558218 MTUS2Q5JR59 1369 aa16.13■□□□□ 0.17
USP3-207ENST00000558218 PTPRMP28827 1452 aa16.11■□□□□ 0.17
USP3-207ENST00000558218 GPATCH8Q9UKJ3 1502 aaKnown RBP16.11■□□□□ 0.17
USP3-207ENST00000558218 LOC105371045A0A1W2PR82 267 aa16.11■□□□□ 0.17
USP3-207ENST00000558218 KDM5CP41229 1560 aa16.11■□□□□ 0.17
USP3-207ENST00000558218 MLH3Q9UHC1 1453 aa16.1■□□□□ 0.17
USP3-207ENST00000558218 CDC42BPAQ5VT25 1732 aa16.1■□□□□ 0.17
USP3-207ENST00000558218 C9orf84Q5VXU9 1444 aa16.1■□□□□ 0.17
USP3-207ENST00000558218 CFDP1Q9UEE9 299 aaPredicted RBP16.09■□□□□ 0.17
USP3-207ENST00000558218 CCNB3Q8WWL7 1395 aa16.09■□□□□ 0.17
USP3-207ENST00000558218 KIAA1107Q9UPP5 1409 aa16.08■□□□□ 0.16
USP3-207ENST00000558218 ABCC1P33527 1531 aa16.08■□□□□ 0.16
USP3-207ENST00000558218 MYT1LQ9UL68 1186 aa16.07■□□□□ 0.16
USP3-207ENST00000558218 PLEKHH2Q8IVE3 1493 aa16.07■□□□□ 0.16
USP3-207ENST00000558218 ARHGEF12Q9NZN5 1544 aa16.06■□□□□ 0.16
USP3-207ENST00000558218 ZNF777Q9ULD5 760 aaPredicted RBP16.06■□□□□ 0.16
USP3-207ENST00000558218 TRAPPC8Q9Y2L5 1435 aa16.05■□□□□ 0.16
USP3-207ENST00000558218 MADDQ8WXG6 1647 aa16.05■□□□□ 0.16
USP3-207ENST00000558218 HECW2Q9P2P5 1572 aa16.04■□□□□ 0.16
USP3-207ENST00000558218 REREQ9P2R6 1566 aa16.04■□□□□ 0.16
USP3-207ENST00000558218 EHBP1L1Q8N3D4 1523 aa16.04■□□□□ 0.16
USP3-207ENST00000558218 POLA2Q14181 598 aa16.04■□□□□ 0.16
USP3-207ENST00000558218 ITSN2Q9NZM3 1697 aa16.03■□□□□ 0.16
USP3-207ENST00000558218 VPS8Q8N3P4 1428 aa16.02■□□□□ 0.16
USP3-207ENST00000558218 HNRNPMP52272 730 aaKnown RBP eCLIP16.02■□□□□ 0.16
USP3-207ENST00000558218 MLECQ14165 292 aa16.01■□□□□ 0.15
USP3-207ENST00000558218 RSPH4AQ5TD94 716 aa16.01■□□□□ 0.15
USP3-207ENST00000558218 SAMD9LQ8IVG5 1584 aa16■□□□□ 0.15
USP3-207ENST00000558218 SPAG9O60271 1321 aaKnown RBP16■□□□□ 0.15
USP3-207ENST00000558218 AGLP35573 1532 aa16■□□□□ 0.15
USP3-207ENST00000558218 SIGLEC1Q9BZZ2 1709 aa16■□□□□ 0.15
USP3-207ENST00000558218 DIP2CQ9Y2E4 1556 aa16■□□□□ 0.15
USP3-207ENST00000558218 MAP3K1Q13233 1512 aa15.99■□□□□ 0.15
USP3-207ENST00000558218 RIMS1Q86UR5 1692 aaKnown RBP15.99■□□□□ 0.15
USP3-207ENST00000558218 KIDINS220Q9ULH0 1771 aa15.98■□□□□ 0.15
USP3-207ENST00000558218 SYCP2Q9BX26 1530 aa15.97■□□□□ 0.15
USP3-207ENST00000558218 TIAM1Q13009 1591 aa15.96■□□□□ 0.15
USP3-207ENST00000558218 ABCA6Q8N139 1617 aa15.96■□□□□ 0.15
USP3-207ENST00000558218 SUPT6HQ7KZ85 1726 aaKnown RBP15.96■□□□□ 0.15
USP3-207ENST00000558218 FER1L4A9Z1Z3 1794 aa15.95■□□□□ 0.14
USP3-207ENST00000558218 NCOA2Q15596 1464 aa15.95■□□□□ 0.14
USP3-207ENST00000558218 ATXN8OSP0DMR3 200 aa15.94■□□□□ 0.14
USP3-207ENST00000558218 ESF1Q9H501 851 aaKnown RBP15.94■□□□□ 0.14
USP3-207ENST00000558218 MBD5Q9P267 1494 aa15.94■□□□□ 0.14
USP3-207ENST00000558218 RTEL1-TNFRSF6BF6WH68 1400 aa15.94■□□□□ 0.14
USP3-207ENST00000558218 ZNF644Q9H582 1327 aaPredicted RBP15.94■□□□□ 0.14
USP3-207ENST00000558218 SETD1BQ9UPS6 1966 aaKnown RBP15.93■□□□□ 0.14
USP3-207ENST00000558218 LRRC9Q6ZRR7 1453 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms