RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 L3MBTL2Q969R5 705 aa22.39■■□□□ 1.17
SHMT2-231ENST00000557433 PRKRIP1Q9H875 184 aaPredicted RBP22.39■■□□□ 1.17
SHMT2-231ENST00000557433 ZBED9Q6R2W3 1325 aa22.38■■□□□ 1.17
SHMT2-231ENST00000557433 ADAMTS12P58397 1594 aa22.37■■□□□ 1.17
SHMT2-231ENST00000557433 CHIC2Q9UKJ5 165 aa22.37■■□□□ 1.17
SHMT2-231ENST00000557433 DNMT1P26358 1616 aaKnown RBP22.37■■□□□ 1.17
SHMT2-231ENST00000557433 TEX14Q8IWB6 1497 aa22.36■■□□□ 1.17
SHMT2-231ENST00000557433 DAPK1P53355 1430 aa22.36■■□□□ 1.17
SHMT2-231ENST00000557433 SPATA31E1Q6ZUB1 1445 aa22.34■■□□□ 1.17
SHMT2-231ENST00000557433 CDK13Q14004 1512 aaKnown RBP22.33■■□□□ 1.16
SHMT2-231ENST00000557433 ABCC5O15440 1437 aa22.29■■□□□ 1.16
SHMT2-231ENST00000557433 MRS2Q9HD23 443 aa22.28■■□□□ 1.16
SHMT2-231ENST00000557433 MYT1LQ9UL68 1186 aa22.27■■□□□ 1.16
SHMT2-231ENST00000557433 MSH5O43196 834 aa22.26■■□□□ 1.15
SHMT2-231ENST00000557433 ARID4BQ4LE39 1312 aaPredicted RBP22.25■■□□□ 1.15
SHMT2-231ENST00000557433 C11orf95C9JLR9 678 aaPredicted RBP22.25■■□□□ 1.15
SHMT2-231ENST00000557433 KIF7Q2M1P5 1343 aa22.24■■□□□ 1.15
SHMT2-231ENST00000557433 NBPF8Q3BBV2 869 aa22.23■■□□□ 1.15
SHMT2-231ENST00000557433 ERICH6Q7L0X2 663 aa22.23■■□□□ 1.15
SHMT2-231ENST00000557433 CCDC184Q52MB2 194 aa22.22■■□□□ 1.15
SHMT2-231ENST00000557433 KIAA0586Q9BVV6 1533 aa22.22■■□□□ 1.15
SHMT2-231ENST00000557433 KIAA0556O60303 1618 aa22.21■■□□□ 1.15
SHMT2-231ENST00000557433 IRX6P78412 446 aaPredicted RBP22.21■■□□□ 1.15
SHMT2-231ENST00000557433 MBD5Q9P267 1494 aa22.2■■□□□ 1.14
SHMT2-231ENST00000557433 SLC4A1APQ9BWU0 796 aaKnown RBP22.2■■□□□ 1.14
SHMT2-231ENST00000557433 SMG6Q86US8 1419 aaKnown RBP22.2■■□□□ 1.14
SHMT2-231ENST00000557433 FAM9BQ8IZU0 186 aa22.19■■□□□ 1.14
SHMT2-231ENST00000557433 BCL11AQ9H165 835 aa22.19■■□□□ 1.14
SHMT2-231ENST00000557433 RAPGEF6Q8TEU7 1601 aa22.18■■□□□ 1.14
SHMT2-231ENST00000557433 ADGBQ8N7X0 1667 aa22.18■■□□□ 1.14
SHMT2-231ENST00000557433 ITSN2Q9NZM3 1697 aa22.17■■□□□ 1.14
SHMT2-231ENST00000557433 ADGRL2O95490 1459 aa22.17■■□□□ 1.14
SHMT2-231ENST00000557433 PZPP20742 1482 aa22.17■■□□□ 1.14
SHMT2-231ENST00000557433 NUP153P49790 1475 aaKnown RBP22.17■■□□□ 1.14
SHMT2-231ENST00000557433 MRC2Q9UBG0 1479 aa22.16■■□□□ 1.14
SHMT2-231ENST00000557433 FOXD1Q16676 465 aa22.16■■□□□ 1.14
SHMT2-231ENST00000557433 DISP1Q96F81 1524 aa22.16■■□□□ 1.14
SHMT2-231ENST00000557433 ROCK2O75116 1388 aaKnown RBP22.15■■□□□ 1.14
SHMT2-231ENST00000557433 KIAA1107Q9UPP5 1409 aa22.15■■□□□ 1.14
SHMT2-231ENST00000557433 KIF14Q15058 1648 aa22.14■■□□□ 1.13
SHMT2-231ENST00000557433 TROQ12816 1431 aaPredicted RBP22.13■■□□□ 1.13
SHMT2-231ENST00000557433 IFT140Q96RY7 1462 aa22.13■■□□□ 1.13
SHMT2-231ENST00000557433 DHX29Q7Z478 1369 aaKnown RBP22.12■■□□□ 1.13
SHMT2-231ENST00000557433 RNF123Q5XPI4 1314 aa22.11■■□□□ 1.13
SHMT2-231ENST00000557433 CAMSAP2Q08AD1 1489 aa22.11■■□□□ 1.13
SHMT2-231ENST00000557433 ADCY10Q96PN6 1610 aa22.1■■□□□ 1.13
SHMT2-231ENST00000557433 UHRF1BP1Q6BDS2 1440 aa22.09■■□□□ 1.13
SHMT2-231ENST00000557433 CROCC2H7BZ55 1655 aa22.08■■□□□ 1.13
SHMT2-231ENST00000557433 NUDCQ9Y266 331 aa22.08■■□□□ 1.13
SHMT2-231ENST00000557433 USP47Q96K76 1375 aa22.08■■□□□ 1.13
SHMT2-231ENST00000557433 KTN1Q86UP2 1357 aaKnown RBP22.07■■□□□ 1.12
SHMT2-231ENST00000557433 KDM5CP41229 1560 aa22.06■■□□□ 1.12
SHMT2-231ENST00000557433 ARHGEF12Q9NZN5 1544 aa22.06■■□□□ 1.12
SHMT2-231ENST00000557433 B4GALNT3Q6L9W6 998 aa22.06■■□□□ 1.12
SHMT2-231ENST00000557433 ANKRD30AQ9BXX3 1397 aa22.05■■□□□ 1.12
SHMT2-231ENST00000557433 ZNF644Q9H582 1327 aaPredicted RBP22.05■■□□□ 1.12
SHMT2-231ENST00000557433 RALGAPBQ86X10 1494 aa22.04■■□□□ 1.12
SHMT2-231ENST00000557433 CFDP1Q9UEE9 299 aaPredicted RBP22.03■■□□□ 1.12
SHMT2-231ENST00000557433 GPATCH8Q9UKJ3 1502 aaKnown RBP22.03■■□□□ 1.12
SHMT2-231ENST00000557433 GRIN2AQ12879 1464 aa22.02■■□□□ 1.12
SHMT2-231ENST00000557433 BCORL1Q5H9F3 1711 aa22.02■■□□□ 1.11
SHMT2-231ENST00000557433 SHANK2Q9UPX8 1470 aa22.01■■□□□ 1.11
SHMT2-231ENST00000557433 KDM5DQ9BY66 1539 aa21.99■■□□□ 1.11
SHMT2-231ENST00000557433 ARID3CA6NKF2 412 aa21.98■■□□□ 1.11
SHMT2-231ENST00000557433 KIF15Q9NS87 1388 aa21.97■■□□□ 1.11
SHMT2-231ENST00000557433 PRG4Q92954 1404 aaPredicted RBP21.97■■□□□ 1.11
SHMT2-231ENST00000557433 ANKRD50Q9ULJ7 1429 aa21.97■■□□□ 1.11
SHMT2-231ENST00000557433 PKD2Q13563 968 aa21.95■■□□□ 1.1
SHMT2-231ENST00000557433 PNISRQ8TF01 805 aaKnown RBP21.95■■□□□ 1.1
SHMT2-231ENST00000557433 BRD4O60885 1362 aaPredicted RBP21.94■■□□□ 1.1
SHMT2-231ENST00000557433 NOP58Q9Y2X3 529 aaKnown RBP21.93■■□□□ 1.1
SHMT2-231ENST00000557433 ZNF608Q9ULD9 1512 aaPredicted RBP21.93■■□□□ 1.1
SHMT2-231ENST00000557433 LRPPRCP42704 1394 aaKnown RBP21.93■■□□□ 1.1
SHMT2-231ENST00000557433 RALBP1Q15311 655 aa21.92■■□□□ 1.1
SHMT2-231ENST00000557433 CCDC136Q96JN2 1154 aa21.92■■□□□ 1.1
SHMT2-231ENST00000557433 MAGI1Q96QZ7 1491 aaPredicted RBP21.92■■□□□ 1.1
SHMT2-231ENST00000557433 TMC1Q8TDI8 760 aa21.9■■□□□ 1.1
SHMT2-231ENST00000557433 CARMIL2Q6F5E8 1435 aa21.9■■□□□ 1.1
SHMT2-231ENST00000557433 MYBBP1AQ9BQG0 1328 aaKnown RBP21.88■■□□□ 1.09
SHMT2-231ENST00000557433 CEP170Q5SW79 1584 aa21.88■■□□□ 1.09
SHMT2-231ENST00000557433 PTPRGP23470 1445 aa21.87■■□□□ 1.09
SHMT2-231ENST00000557433 EIF4G3O43432 1585 aaKnown RBP21.87■■□□□ 1.09
SHMT2-231ENST00000557433 ANP32AP39687 249 aaKnown RBP21.86■■□□□ 1.09
SHMT2-231ENST00000557433 CARD11Q9BXL7 1154 aa21.86■■□□□ 1.09
SHMT2-231ENST00000557433 C9orf84Q5VXU9 1444 aa21.86■■□□□ 1.09
SHMT2-231ENST00000557433 E9PCH4 1651 aa21.86■■□□□ 1.09
SHMT2-231ENST00000557433 PLB1Q6P1J6 1458 aa21.85■■□□□ 1.09
SHMT2-231ENST00000557433 NUP155O75694 1391 aa21.85■■□□□ 1.09
SHMT2-231ENST00000557433 CDC42BPAQ5VT25 1732 aa21.84■■□□□ 1.09
SHMT2-231ENST00000557433 SYNJ2O15056 1496 aa21.84■■□□□ 1.09
SHMT2-231ENST00000557433 INSRP06213 1382 aa21.83■■□□□ 1.09
SHMT2-231ENST00000557433 ARHGEF5Q12774 1597 aa21.83■■□□□ 1.09
SHMT2-231ENST00000557433 ZNF326Q5BKZ1 582 aaKnown RBP21.83■■□□□ 1.09
SHMT2-231ENST00000557433 ABCC10Q5T3U5 1492 aa21.83■■□□□ 1.09
SHMT2-231ENST00000557433 PDE3BQ13370 1112 aa21.82■■□□□ 1.08
SHMT2-231ENST00000557433 IPO9Q96P70 1041 aaKnown RBP21.81■■□□□ 1.08
SHMT2-231ENST00000557433 ZMYM4Q5VZL5 1548 aa21.81■■□□□ 1.08
SHMT2-231ENST00000557433 POLR3GLQ9BT43 218 aa21.8■■□□□ 1.08
SHMT2-231ENST00000557433 ZNF777Q9ULD5 760 aaPredicted RBP21.8■■□□□ 1.08
SHMT2-231ENST00000557433 PLEKHD1A6NEE1 506 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms