RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ABCC10Q5T3U5 1492 aa18.48■□□□□ 0.55
SHMT2-229ENST00000557348 CFDP1Q9UEE9 299 aaPredicted RBP18.47■□□□□ 0.55
SHMT2-229ENST00000557348 GCC2Q8IWJ2 1684 aa18.47■□□□□ 0.55
SHMT2-229ENST00000557348 DAPK1P53355 1430 aa18.47■□□□□ 0.55
SHMT2-229ENST00000557348 CAMSAP2Q08AD1 1489 aa18.45■□□□□ 0.54
SHMT2-229ENST00000557348 ERCC6L2Q5T890 1561 aa18.44■□□□□ 0.54
SHMT2-229ENST00000557348 MAPKBP1O60336 1514 aa18.43■□□□□ 0.54
SHMT2-229ENST00000557348 TIMELESSQ9UNS1 1208 aa18.43■□□□□ 0.54
SHMT2-229ENST00000557348 KDM5BQ9UGL1 1544 aa18.42■□□□□ 0.54
SHMT2-229ENST00000557348 ABCC5O15440 1437 aa18.42■□□□□ 0.54
SHMT2-229ENST00000557348 CENPBP07199 599 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-229ENST00000557348 SHANK2Q9UPX8 1470 aa18.39■□□□□ 0.53
SHMT2-229ENST00000557348 CDC42BPAQ5VT25 1732 aa18.38■□□□□ 0.53
SHMT2-229ENST00000557348 ADGRL2O95490 1459 aa18.38■□□□□ 0.53
SHMT2-229ENST00000557348 RSPH4AQ5TD94 716 aa18.36■□□□□ 0.53
SHMT2-229ENST00000557348 PREX2Q70Z35 1606 aa18.36■□□□□ 0.53
SHMT2-229ENST00000557348 CROCC2H7BZ55 1655 aa18.35■□□□□ 0.53
SHMT2-229ENST00000557348 ADGBQ8N7X0 1667 aa18.35■□□□□ 0.53
SHMT2-229ENST00000557348 ARHGEF5Q12774 1597 aa18.34■□□□□ 0.53
SHMT2-229ENST00000557348 ZCCHC11Q5TAX3 1644 aaKnown RBP18.34■□□□□ 0.53
SHMT2-229ENST00000557348 PLEKHH2Q8IVE3 1493 aa18.34■□□□□ 0.53
SHMT2-229ENST00000557348 ANKRD30AQ9BXX3 1397 aa18.32■□□□□ 0.52
SHMT2-229ENST00000557348 ZNF316A6NFI3 1004 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-229ENST00000557348 RRP7BPQ9NSQ0 103 aa18.32■□□□□ 0.52
SHMT2-229ENST00000557348 CHIC2Q9UKJ5 165 aa18.32■□□□□ 0.52
SHMT2-229ENST00000557348 ZNF644Q9H582 1327 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-229ENST00000557348 CYB5RLQ6IPT4 315 aa18.31■□□□□ 0.52
SHMT2-229ENST00000557348 NCOA1Q15788 1441 aa18.3■□□□□ 0.52
SHMT2-229ENST00000557348 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.3■□□□□ 0.52
SHMT2-229ENST00000557348 ZNF777Q9ULD5 760 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-229ENST00000557348 ARAP3Q8WWN8 1544 aa18.28■□□□□ 0.52
SHMT2-229ENST00000557348 MYO5CQ9NQX4 1742 aa18.27■□□□□ 0.52
SHMT2-229ENST00000557348 CCDC141Q6ZP82 1450 aa18.27■□□□□ 0.52
SHMT2-229ENST00000557348 TSPY4P0CV99 314 aa18.27■□□□□ 0.52
SHMT2-229ENST00000557348 TSPY10P0CW01 314 aa18.27■□□□□ 0.52
SHMT2-229ENST00000557348 KIAA1107Q9UPP5 1409 aa18.27■□□□□ 0.51
SHMT2-229ENST00000557348 TTC37Q6PGP7 1564 aa18.26■□□□□ 0.51
SHMT2-229ENST00000557348 C9orf84Q5VXU9 1444 aa18.26■□□□□ 0.51
SHMT2-229ENST00000557348 ARHGAP5Q13017 1502 aa18.26■□□□□ 0.51
SHMT2-229ENST00000557348 PLCH2O75038 1416 aa18.25■□□□□ 0.51
SHMT2-229ENST00000557348 CDC42BPBQ9Y5S2 1711 aa18.25■□□□□ 0.51
SHMT2-229ENST00000557348 SAMD9LQ8IVG5 1584 aa18.24■□□□□ 0.51
SHMT2-229ENST00000557348 MBD5Q9P267 1494 aa18.24■□□□□ 0.51
SHMT2-229ENST00000557348 WDR7Q9Y4E6 1490 aa18.24■□□□□ 0.51
SHMT2-229ENST00000557348 TRIM52Q96A61 297 aa18.22■□□□□ 0.51
SHMT2-229ENST00000557348 MAST1Q9Y2H9 1570 aa18.22■□□□□ 0.51
SHMT2-229ENST00000557348 TONSLQ96HA7 1378 aa18.2■□□□□ 0.5
SHMT2-229ENST00000557348 EFCAB2Q5VUJ9 269 aa18.19■□□□□ 0.5
SHMT2-229ENST00000557348 KDM6BO15054 1643 aa18.19■□□□□ 0.5
SHMT2-229ENST00000557348 ANKRD50Q9ULJ7 1429 aa18.19■□□□□ 0.5
SHMT2-229ENST00000557348 MPHOSPH9Q99550 1183 aa18.18■□□□□ 0.5
SHMT2-229ENST00000557348 NPM1P06748 294 aaKnown RBP eCLIP18.17■□□□□ 0.5
SHMT2-229ENST00000557348 DIEXFQ68CQ4 756 aaKnown RBP18.17■□□□□ 0.5
SHMT2-229ENST00000557348 SYCP2Q9BX26 1530 aa18.16■□□□□ 0.5
SHMT2-229ENST00000557348 NEUROD1Q13562 356 aa18.15■□□□□ 0.5
SHMT2-229ENST00000557348 KCNH8Q96L42 1107 aa18.15■□□□□ 0.5
SHMT2-229ENST00000557348 ABCA9Q8IUA7 1624 aa18.15■□□□□ 0.5
SHMT2-229ENST00000557348 KIF15Q9NS87 1388 aa18.15■□□□□ 0.5
SHMT2-229ENST00000557348 SIN3AQ96ST3 1273 aa18.15■□□□□ 0.5
SHMT2-229ENST00000557348 HNRNPMP52272 730 aaKnown RBP eCLIP18.14■□□□□ 0.49
SHMT2-229ENST00000557348 KDM5DQ9BY66 1539 aa18.14■□□□□ 0.49
SHMT2-229ENST00000557348 PLXNC1O60486 1568 aa18.13■□□□□ 0.49
SHMT2-229ENST00000557348 ABCC1P33527 1531 aa18.12■□□□□ 0.49
SHMT2-229ENST00000557348 DENND4BO75064 1496 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-229ENST00000557348 ASXL2Q76L83 1435 aa18.12■□□□□ 0.49
SHMT2-229ENST00000557348 SLC4A1APQ9BWU0 796 aaKnown RBP18.11■□□□□ 0.49
SHMT2-229ENST00000557348 PPP1R15AO75807 674 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-229ENST00000557348 PZPP20742 1482 aa18.09■□□□□ 0.49
SHMT2-229ENST00000557348 ANKRD30BQ9BXX2 1392 aa18.08■□□□□ 0.49
SHMT2-229ENST00000557348 RTEL1-TNFRSF6BF6WH68 1400 aa18.08■□□□□ 0.48
SHMT2-229ENST00000557348 DUOX2Q9NRD8 1548 aa18.07■□□□□ 0.48
SHMT2-229ENST00000557348 RPRD2Q5VT52 1461 aaKnown RBP18.06■□□□□ 0.48
SHMT2-229ENST00000557348 TRHP20396 242 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-229ENST00000557348 ERBINQ96RT1 1412 aa18.06■□□□□ 0.48
SHMT2-229ENST00000557348 FANCAO15360 1455 aa18.06■□□□□ 0.48
SHMT2-229ENST00000557348 CFAP74Q9C0B2 1584 aa18.04■□□□□ 0.48
SHMT2-229ENST00000557348 GTF3C3Q9Y5Q9 886 aa18.04■□□□□ 0.48
SHMT2-229ENST00000557348 NUP155O75694 1391 aa18.03■□□□□ 0.48
SHMT2-229ENST00000557348 ARHGEF12Q9NZN5 1544 aa18.03■□□□□ 0.48
SHMT2-229ENST00000557348 UNC13BO14795 1591 aa18.01■□□□□ 0.47
SHMT2-229ENST00000557348 ADGRL1O94910 1474 aa17.98■□□□□ 0.47
SHMT2-229ENST00000557348 SPAG9O60271 1321 aaKnown RBP17.98■□□□□ 0.47
SHMT2-229ENST00000557348 TRAPPC8Q9Y2L5 1435 aa17.97■□□□□ 0.47
SHMT2-229ENST00000557348 PKD2Q13563 968 aa17.97■□□□□ 0.47
SHMT2-229ENST00000557348 ZFYVE16Q7Z3T8 1539 aa17.97■□□□□ 0.47
SHMT2-229ENST00000557348 MAGI2Q86UL8 1455 aa17.96■□□□□ 0.47
SHMT2-229ENST00000557348 FAM135AQ9P2D6 1515 aa17.96■□□□□ 0.47
SHMT2-229ENST00000557348 TEX14Q8IWB6 1497 aa17.94■□□□□ 0.46
SHMT2-229ENST00000557348 CD109Q6YHK3 1445 aa17.94■□□□□ 0.46
SHMT2-229ENST00000557348 INO80Q9ULG1 1556 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-229ENST00000557348 ZNF518AQ6AHZ1 1483 aa17.93■□□□□ 0.46
SHMT2-229ENST00000557348 IQGAP3Q86VI3 1631 aa17.93■□□□□ 0.46
SHMT2-229ENST00000557348 ATP7AQ04656 1500 aa17.93■□□□□ 0.46
SHMT2-229ENST00000557348 SCAPERQ9BY12 1400 aa17.93■□□□□ 0.46
SHMT2-229ENST00000557348 FOXD1Q16676 465 aa17.91■□□□□ 0.46
SHMT2-229ENST00000557348 NEO1Q92859 1461 aa17.91■□□□□ 0.46
SHMT2-229ENST00000557348 L3MBTL2Q969R5 705 aa17.9■□□□□ 0.46
SHMT2-229ENST00000557348 EIF2AK4Q9P2K8 1649 aaKnown RBP17.88■□□□□ 0.45
SHMT2-229ENST00000557348 GLI2P10070 1586 aa17.88■□□□□ 0.45
SHMT2-229ENST00000557348 ATP10AO60312 1499 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms