RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 KIF21BO75037 1637 aa18.1■□□□□ 0.49
SHMT2-226ENST00000556825 SMG6Q86US8 1419 aaKnown RBP18.09■□□□□ 0.49
SHMT2-226ENST00000556825 MAP7D2Q96T17 732 aa18.06■□□□□ 0.48
SHMT2-226ENST00000556825 AKNAQ7Z591 1439 aa18.05■□□□□ 0.48
SHMT2-226ENST00000556825 SLC4A3P48751 1232 aa18.05■□□□□ 0.48
SHMT2-226ENST00000556825 POGKQ9P215 609 aa18.04■□□□□ 0.48
SHMT2-226ENST00000556825 UTP14CQ5TAP6 766 aaKnown RBP18.02■□□□□ 0.48
SHMT2-226ENST00000556825 RAPGEF2Q9Y4G8 1499 aa18.02■□□□□ 0.48
SHMT2-226ENST00000556825 ARID4BQ4LE39 1312 aaPredicted RBP18.02■□□□□ 0.48
SHMT2-226ENST00000556825 XRCC6P12956 609 aaKnown RBP eCLIP18■□□□□ 0.47
SHMT2-226ENST00000556825 ZHX1Q9UKY1 873 aaPredicted RBP17.99■□□□□ 0.47
SHMT2-226ENST00000556825 NUDCQ9Y266 331 aa17.98■□□□□ 0.47
SHMT2-226ENST00000556825 RRBP1Q9P2E9 1410 aaKnown RBP17.98■□□□□ 0.47
SHMT2-226ENST00000556825 ESPNB1AK53 854 aa17.97■□□□□ 0.47
SHMT2-226ENST00000556825 BRD2P25440 801 aaKnown RBP17.97■□□□□ 0.47
SHMT2-226ENST00000556825 TMEM51Q9NW97 253 aa17.96■□□□□ 0.47
SHMT2-226ENST00000556825 FANCD2Q9BXW9 1451 aa17.96■□□□□ 0.47
SHMT2-226ENST00000556825 CCDC184Q52MB2 194 aa17.96■□□□□ 0.47
SHMT2-226ENST00000556825 FTSJ3Q8IY81 847 aaKnown RBP17.96■□□□□ 0.47
SHMT2-226ENST00000556825 FAM9BQ8IZU0 186 aa17.95■□□□□ 0.46
SHMT2-226ENST00000556825 FSD2A1L4K1 749 aa17.94■□□□□ 0.46
SHMT2-226ENST00000556825 GOLGA6L3A6NEY3 463 aa17.94■□□□□ 0.46
SHMT2-226ENST00000556825 DMTNQ08495 405 aa17.94■□□□□ 0.46
SHMT2-226ENST00000556825 NESP48681 1621 aa17.93■□□□□ 0.46
SHMT2-226ENST00000556825 KIF27Q86VH2 1401 aa17.93■□□□□ 0.46
SHMT2-226ENST00000556825 RAB3GAP2Q9H2M9 1393 aa17.92■□□□□ 0.46
SHMT2-226ENST00000556825 ZNF830Q96NB3 372 aaPredicted RBP17.91■□□□□ 0.46
SHMT2-226ENST00000556825 LAMC3Q9Y6N6 1575 aa17.91■□□□□ 0.46
SHMT2-226ENST00000556825 KIAA1211Q6ZU35 1233 aa17.91■□□□□ 0.46
SHMT2-226ENST00000556825 TERF1P54274 439 aa17.9■□□□□ 0.46
SHMT2-226ENST00000556825 PPP4R3BQ5MIZ7 849 aa17.9■□□□□ 0.46
SHMT2-226ENST00000556825 RIPK4P57078 832 aa17.88■□□□□ 0.45
SHMT2-226ENST00000556825 FOXD1Q16676 465 aa17.88■□□□□ 0.45
SHMT2-226ENST00000556825 ZFP91Q96JP5 570 aaPredicted RBP17.88■□□□□ 0.45
SHMT2-226ENST00000556825 PANK2Q9BZ23 570 aa17.88■□□□□ 0.45
SHMT2-226ENST00000556825 ERBB4Q15303 1308 aa17.88■□□□□ 0.45
SHMT2-226ENST00000556825 MTERF4Q7Z6M4 381 aaKnown RBP17.87■□□□□ 0.45
SHMT2-226ENST00000556825 TEX2Q8IWB9 1127 aa17.87■□□□□ 0.45
SHMT2-226ENST00000556825 MRS2Q9HD23 443 aa17.87■□□□□ 0.45
SHMT2-226ENST00000556825 FGD5Q6ZNL6 1462 aa17.87■□□□□ 0.45
SHMT2-226ENST00000556825 PRXQ9BXM0 1461 aa17.86■□□□□ 0.45
SHMT2-226ENST00000556825 CHRM1P11229 460 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-226ENST00000556825 ERICH3Q5RHP9 1530 aa17.85■□□□□ 0.45
SHMT2-226ENST00000556825 DHX37Q8IY37 1157 aaKnown RBP17.84■□□□□ 0.45
SHMT2-226ENST00000556825 DNMBPQ6XZF7 1577 aa17.84■□□□□ 0.45
SHMT2-226ENST00000556825 TNNT2P45379 298 aaPredicted RBP17.83■□□□□ 0.45
SHMT2-226ENST00000556825 PLCD3Q8N3E9 789 aa17.83■□□□□ 0.45
SHMT2-226ENST00000556825 MRE11P49959 708 aa17.82■□□□□ 0.44
SHMT2-226ENST00000556825 EXOC6Q8TAG9 804 aa17.82■□□□□ 0.44
SHMT2-226ENST00000556825 CCNB3Q8WWL7 1395 aa17.81■□□□□ 0.44
SHMT2-226ENST00000556825 KIF20AO95235 890 aa17.81■□□□□ 0.44
SHMT2-226ENST00000556825 CHMP4AQ9BY43 222 aa17.81■□□□□ 0.44
SHMT2-226ENST00000556825 MYH16Q9H6N6 1097 aa17.81■□□□□ 0.44
SHMT2-226ENST00000556825 PRKRIP1Q9H875 184 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-226ENST00000556825 PRDM10Q9NQV6 1147 aa17.8■□□□□ 0.44
SHMT2-226ENST00000556825 FAM13BQ9NYF5 915 aa17.8■□□□□ 0.44
SHMT2-226ENST00000556825 ANP32BQ92688 251 aaKnown RBP17.8■□□□□ 0.44
SHMT2-226ENST00000556825 TOPBP1Q92547 1522 aa17.8■□□□□ 0.44
SHMT2-226ENST00000556825 ZSCAN20P17040 1043 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-226ENST00000556825 PDS5BQ9NTI5 1447 aa17.79■□□□□ 0.44
SHMT2-226ENST00000556825 OFD1O75665 1012 aa17.79■□□□□ 0.44
SHMT2-226ENST00000556825 VGLL3A8MV65 326 aa17.78■□□□□ 0.44
SHMT2-226ENST00000556825 SETD5Q9C0A6 1442 aa17.77■□□□□ 0.44
SHMT2-226ENST00000556825 CNTLNQ9NXG0 1405 aa17.77■□□□□ 0.44
SHMT2-226ENST00000556825 SECISBP2LQ93073 1101 aaKnown RBP17.77■□□□□ 0.44
SHMT2-226ENST00000556825 VGFO15240 615 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-226ENST00000556825 TRIM44Q96DX7 344 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-226ENST00000556825 GTPBP4Q9BZE4 634 aaKnown RBP17.76■□□□□ 0.43
SHMT2-226ENST00000556825 RRP1P56182 461 aaKnown RBP17.76■□□□□ 0.43
SHMT2-226ENST00000556825 NCOA2Q15596 1464 aa17.75■□□□□ 0.43
SHMT2-226ENST00000556825 IGF1RP08069 1367 aa17.75■□□□□ 0.43
SHMT2-226ENST00000556825 FHAD1B1AJZ9 1412 aa17.75■□□□□ 0.43
SHMT2-226ENST00000556825 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-226ENST00000556825 ARAP1Q96P48 1450 aa17.74■□□□□ 0.43
SHMT2-226ENST00000556825 LETM1O95202 739 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-226ENST00000556825 KANK4Q5T7N3 995 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-226ENST00000556825 POLA1P09884 1462 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-226ENST00000556825 TAF3Q5VWG9 929 aa17.72■□□□□ 0.43
SHMT2-226ENST00000556825 FAM161AQ3B820 660 aa17.72■□□□□ 0.43
SHMT2-226ENST00000556825 KIF21AQ7Z4S6 1674 aa17.72■□□□□ 0.43
SHMT2-226ENST00000556825 URB2Q14146 1524 aaKnown RBP17.72■□□□□ 0.43
SHMT2-226ENST00000556825 ISY1Q9ULR0 285 aaKnown RBP17.71■□□□□ 0.43
SHMT2-226ENST00000556825 RAD54L2Q9Y4B4 1467 aa17.71■□□□□ 0.43
SHMT2-226ENST00000556825 CCDC94Q9BW85 323 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-226ENST00000556825 GRPEL1Q9HAV7 217 aa17.7■□□□□ 0.42
SHMT2-226ENST00000556825 ABCA10Q8WWZ4 1543 aa17.69■□□□□ 0.42
SHMT2-226ENST00000556825 CARMIL1Q5VZK9 1371 aa17.68■□□□□ 0.42
SHMT2-226ENST00000556825 C8orf34Q49A92 452 aa17.67■□□□□ 0.42
SHMT2-226ENST00000556825 TONSLQ96HA7 1378 aa17.66■□□□□ 0.42
SHMT2-226ENST00000556825 DYNC1I1O14576 645 aa17.66■□□□□ 0.42
SHMT2-226ENST00000556825 SKAP1Q86WV1 359 aa17.64■□□□□ 0.41
SHMT2-226ENST00000556825 CDK11BP21127 795 aaKnown RBP17.63■□□□□ 0.41
SHMT2-226ENST00000556825 RGS22Q8NE09 1264 aa17.63■□□□□ 0.41
SHMT2-226ENST00000556825 GZF1Q9H116 711 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-226ENST00000556825 SAMD1Q6SPF0 538 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-226ENST00000556825 ZSCAN30Q86W11 494 aa17.63■□□□□ 0.41
SHMT2-226ENST00000556825 ANTXR1Q9H6X2 564 aa17.62■□□□□ 0.41
SHMT2-226ENST00000556825 IRX3P78415 501 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-226ENST00000556825 BECN1Q14457 450 aa17.62■□□□□ 0.41
SHMT2-226ENST00000556825 UQCRHLA0A096LP55 91 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms