RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 CDC42BPAQ5VT25 1732 aa16.74■□□□□ 0.27
SHMT2-224ENST00000556737 POGZQ7Z3K3 1410 aa16.74■□□□□ 0.27
SHMT2-224ENST00000556737 ARHGAP5Q13017 1502 aa16.73■□□□□ 0.27
SHMT2-224ENST00000556737 SIGLEC1Q9BZZ2 1709 aa16.72■□□□□ 0.27
SHMT2-224ENST00000556737 ZFYVE16Q7Z3T8 1539 aa16.7■□□□□ 0.26
SHMT2-224ENST00000556737 ADAMTSL3P82987 1691 aa16.7■□□□□ 0.26
SHMT2-224ENST00000556737 KDM5CP41229 1560 aa16.7■□□□□ 0.26
SHMT2-224ENST00000556737 ABCC1P33527 1531 aa16.7■□□□□ 0.26
SHMT2-224ENST00000556737 SCAPERQ9BY12 1400 aa16.7■□□□□ 0.26
SHMT2-224ENST00000556737 BCORL1Q5H9F3 1711 aa16.69■□□□□ 0.26
SHMT2-224ENST00000556737 YEATS2Q9ULM3 1422 aa16.69■□□□□ 0.26
SHMT2-224ENST00000556737 ITSN2Q9NZM3 1697 aa16.69■□□□□ 0.26
SHMT2-224ENST00000556737 MAGI2Q86UL8 1455 aa16.67■□□□□ 0.26
SHMT2-224ENST00000556737 EHBP1L1Q8N3D4 1523 aa16.67■□□□□ 0.26
SHMT2-224ENST00000556737 ZNF518AQ6AHZ1 1483 aa16.66■□□□□ 0.26
SHMT2-224ENST00000556737 SAMD9LQ8IVG5 1584 aa16.65■□□□□ 0.26
SHMT2-224ENST00000556737 EFCAB2Q5VUJ9 269 aa16.65■□□□□ 0.26
SHMT2-224ENST00000556737 ARHGEF12Q9NZN5 1544 aa16.65■□□□□ 0.26
SHMT2-224ENST00000556737 HECW2Q9P2P5 1572 aa16.64■□□□□ 0.25
SHMT2-224ENST00000556737 MADDQ8WXG6 1647 aa16.64■□□□□ 0.25
SHMT2-224ENST00000556737 LOC105371045A0A1W2PR82 267 aa16.64■□□□□ 0.25
SHMT2-224ENST00000556737 TIAM1Q13009 1591 aa16.64■□□□□ 0.25
SHMT2-224ENST00000556737 GPATCH8Q9UKJ3 1502 aaKnown RBP16.63■□□□□ 0.25
SHMT2-224ENST00000556737 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
SHMT2-224ENST00000556737 DIP2CQ9Y2E4 1556 aa16.61■□□□□ 0.25
SHMT2-224ENST00000556737 ABCA6Q8N139 1617 aa16.61■□□□□ 0.25
SHMT2-224ENST00000556737 MTUS2Q5JR59 1369 aa16.6■□□□□ 0.25
SHMT2-224ENST00000556737 TRAPPC8Q9Y2L5 1435 aa16.6■□□□□ 0.25
SHMT2-224ENST00000556737 SYCP2Q9BX26 1530 aa16.59■□□□□ 0.25
SHMT2-224ENST00000556737 REREQ9P2R6 1566 aa16.58■□□□□ 0.24
SHMT2-224ENST00000556737 RIMS1Q86UR5 1692 aaKnown RBP16.58■□□□□ 0.24
SHMT2-224ENST00000556737 KIDINS220Q9ULH0 1771 aa16.57■□□□□ 0.24
SHMT2-224ENST00000556737 ATP10AO60312 1499 aa16.57■□□□□ 0.24
SHMT2-224ENST00000556737 PTPRMP28827 1452 aa16.57■□□□□ 0.24
SHMT2-224ENST00000556737 MLH3Q9UHC1 1453 aa16.57■□□□□ 0.24
SHMT2-224ENST00000556737 C9orf84Q5VXU9 1444 aa16.57■□□□□ 0.24
SHMT2-224ENST00000556737 SUPT6HQ7KZ85 1726 aaKnown RBP16.56■□□□□ 0.24
SHMT2-224ENST00000556737 FER1L4A9Z1Z3 1794 aa16.54■□□□□ 0.24
SHMT2-224ENST00000556737 CCNB3Q8WWL7 1395 aa16.54■□□□□ 0.24
SHMT2-224ENST00000556737 AFAP1Q8N556 730 aa16.54■□□□□ 0.24
SHMT2-224ENST00000556737 INO80Q9ULG1 1556 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-224ENST00000556737 NCOA2Q15596 1464 aa16.53■□□□□ 0.24
SHMT2-224ENST00000556737 ARID4BQ4LE39 1312 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-224ENST00000556737 MAP3K1Q13233 1512 aa16.52■□□□□ 0.24
SHMT2-224ENST00000556737 PLEKHH2Q8IVE3 1493 aa16.52■□□□□ 0.23
SHMT2-224ENST00000556737 LRRC9Q6ZRR7 1453 aa16.51■□□□□ 0.23
SHMT2-224ENST00000556737 KIAA1107Q9UPP5 1409 aa16.51■□□□□ 0.23
SHMT2-224ENST00000556737 AGLP35573 1532 aa16.49■□□□□ 0.23
SHMT2-224ENST00000556737 ATP7AQ04656 1500 aa16.49■□□□□ 0.23
SHMT2-224ENST00000556737 CFDP1Q9UEE9 299 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-224ENST00000556737 ZNF777Q9ULD5 760 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-224ENST00000556737 MBD5Q9P267 1494 aa16.47■□□□□ 0.23
SHMT2-224ENST00000556737 PLXNC1O60486 1568 aa16.47■□□□□ 0.23
SHMT2-224ENST00000556737 CAMSAP2Q08AD1 1489 aa16.46■□□□□ 0.23
SHMT2-224ENST00000556737 ZNF644Q9H582 1327 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-224ENST00000556737 HNRNPMP52272 730 aaKnown RBP eCLIP16.43■□□□□ 0.22
SHMT2-224ENST00000556737 ADGBQ8N7X0 1667 aa16.42■□□□□ 0.22
SHMT2-224ENST00000556737 LMTK3Q96Q04 1460 aa16.42■□□□□ 0.22
SHMT2-224ENST00000556737 SPAG9O60271 1321 aaKnown RBP16.41■□□□□ 0.22
SHMT2-224ENST00000556737 ARHGEF5Q12774 1597 aa16.4■□□□□ 0.22
SHMT2-224ENST00000556737 MLECQ14165 292 aa16.4■□□□□ 0.22
SHMT2-224ENST00000556737 CCDC141Q6ZP82 1450 aa16.4■□□□□ 0.22
SHMT2-224ENST00000556737 KANK4Q5T7N3 995 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-224ENST00000556737 MYT1LQ9UL68 1186 aa16.39■□□□□ 0.21
SHMT2-224ENST00000556737 C3P01024 1663 aa16.38■□□□□ 0.21
SHMT2-224ENST00000556737 A2MP01023 1474 aa16.37■□□□□ 0.21
SHMT2-224ENST00000556737 RTEL1-TNFRSF6BF6WH68 1400 aa16.36■□□□□ 0.21
SHMT2-224ENST00000556737 PREX1Q8TCU6 1659 aa16.36■□□□□ 0.21
SHMT2-224ENST00000556737 MYOM3Q5VTT5 1437 aa16.36■□□□□ 0.21
SHMT2-224ENST00000556737 MROH2AA6NES4 1674 aa16.35■□□□□ 0.21
SHMT2-224ENST00000556737 MAST1Q9Y2H9 1570 aa16.34■□□□□ 0.21
SHMT2-224ENST00000556737 MIA2Q96PC5 1412 aa16.33■□□□□ 0.2
SHMT2-224ENST00000556737 CROCC2H7BZ55 1655 aa16.31■□□□□ 0.2
SHMT2-224ENST00000556737 CLTCQ00610 1675 aaKnown RBP16.31■□□□□ 0.2
SHMT2-224ENST00000556737 CNTLNQ9NXG0 1405 aa16.3■□□□□ 0.2
SHMT2-224ENST00000556737 PTPN23Q9H3S7 1636 aa16.29■□□□□ 0.2
SHMT2-224ENST00000556737 PLPPR3Q6T4P5 718 aa16.28■□□□□ 0.2
SHMT2-224ENST00000556737 CEBPAP49715 358 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-224ENST00000556737 TCOF1Q13428 1488 aaKnown RBP16.27■□□□□ 0.19
SHMT2-224ENST00000556737 DHX29Q7Z478 1369 aaKnown RBP16.26■□□□□ 0.19
SHMT2-224ENST00000556737 FGD6Q6ZV73 1430 aa16.26■□□□□ 0.19
SHMT2-224ENST00000556737 DNMT1P26358 1616 aaKnown RBP16.25■□□□□ 0.19
SHMT2-224ENST00000556737 SHANK2Q9UPX8 1470 aa16.24■□□□□ 0.19
SHMT2-224ENST00000556737 RNF17Q9BXT8 1623 aaKnown RBP16.24■□□□□ 0.19
SHMT2-224ENST00000556737 RSPH4AQ5TD94 716 aa16.24■□□□□ 0.19
SHMT2-224ENST00000556737 FAM135AQ9P2D6 1515 aa16.24■□□□□ 0.19
SHMT2-224ENST00000556737 EIF2AK4Q9P2K8 1649 aaKnown RBP16.23■□□□□ 0.19
SHMT2-224ENST00000556737 UHRF1BP1Q6BDS2 1440 aa16.22■□□□□ 0.19
SHMT2-224ENST00000556737 KDM5DQ9BY66 1539 aa16.22■□□□□ 0.19
SHMT2-224ENST00000556737 MYO3AQ8NEV4 1616 aa16.22■□□□□ 0.19
SHMT2-224ENST00000556737 ZNF142P52746 1687 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-224ENST00000556737 NPATQ14207 1427 aa16.21■□□□□ 0.19
SHMT2-224ENST00000556737 MROH1Q8NDA8 1641 aa16.21■□□□□ 0.19
SHMT2-224ENST00000556737 HSPA2P54652 639 aa16.21■□□□□ 0.19
SHMT2-224ENST00000556737 APLP2Q06481 763 aa16.21■□□□□ 0.19
SHMT2-224ENST00000556737 SETD1BQ9UPS6 1966 aaKnown RBP16.2■□□□□ 0.18
SHMT2-224ENST00000556737 ABCC5O15440 1437 aa16.2■□□□□ 0.18
SHMT2-224ENST00000556737 STRCQ7RTU9 1775 aa16.19■□□□□ 0.18
SHMT2-224ENST00000556737 ZMYM3Q14202 1370 aa16.19■□□□□ 0.18
SHMT2-224ENST00000556737 DAPK1P53355 1430 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms