RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 PHLDB1Q86UU1 1377 aa17.1■□□□□ 0.33
SHMT2-220ENST00000555634 RRBP1Q9P2E9 1410 aaKnown RBP17.08■□□□□ 0.32
SHMT2-220ENST00000555634 CROCC2H7BZ55 1655 aa17.07■□□□□ 0.32
SHMT2-220ENST00000555634 GPATCH8Q9UKJ3 1502 aaKnown RBP17.07■□□□□ 0.32
SHMT2-220ENST00000555634 PLEKHH2Q8IVE3 1493 aa17.07■□□□□ 0.32
SHMT2-220ENST00000555634 TEX14Q8IWB6 1497 aa17.06■□□□□ 0.32
SHMT2-220ENST00000555634 CAMSAP2Q08AD1 1489 aa17.05■□□□□ 0.32
SHMT2-220ENST00000555634 CFDP1Q9UEE9 299 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-220ENST00000555634 CD109Q6YHK3 1445 aa17.04■□□□□ 0.32
SHMT2-220ENST00000555634 TCOF1Q13428 1488 aaKnown RBP17.04■□□□□ 0.32
SHMT2-220ENST00000555634 PLCH2O75038 1416 aa17.04■□□□□ 0.32
SHMT2-220ENST00000555634 ADGBQ8N7X0 1667 aa17.04■□□□□ 0.32
SHMT2-220ENST00000555634 SAMD9LQ8IVG5 1584 aa17.03■□□□□ 0.32
SHMT2-220ENST00000555634 TRIM26Q12899 539 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-220ENST00000555634 FANCAO15360 1455 aa17.03■□□□□ 0.32
SHMT2-220ENST00000555634 DNMT1P26358 1616 aaKnown RBP17.03■□□□□ 0.32
SHMT2-220ENST00000555634 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.02■□□□□ 0.31
SHMT2-220ENST00000555634 ABCC1P33527 1531 aa17.01■□□□□ 0.31
SHMT2-220ENST00000555634 ARHGEF5Q12774 1597 aa17■□□□□ 0.31
SHMT2-220ENST00000555634 FAM50AQ14320 339 aaKnown RBP17■□□□□ 0.31
SHMT2-220ENST00000555634 NEO1Q92859 1461 aa16.99■□□□□ 0.31
SHMT2-220ENST00000555634 FAM69CQ0P6D2 419 aa16.99■□□□□ 0.31
SHMT2-220ENST00000555634 PPRC1Q5VV67 1664 aaKnown RBP16.99■□□□□ 0.31
SHMT2-220ENST00000555634 SYCP2Q9BX26 1530 aa16.99■□□□□ 0.31
SHMT2-220ENST00000555634 EFCAB2Q5VUJ9 269 aa16.98■□□□□ 0.31
SHMT2-220ENST00000555634 ZNF777Q9ULD5 760 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-220ENST00000555634 ADGRL1O94910 1474 aa16.97■□□□□ 0.31
SHMT2-220ENST00000555634 CCDC141Q6ZP82 1450 aa16.94■□□□□ 0.3
SHMT2-220ENST00000555634 SHANK2Q9UPX8 1470 aa16.93■□□□□ 0.3
SHMT2-220ENST00000555634 KIAA1107Q9UPP5 1409 aa16.93■□□□□ 0.3
SHMT2-220ENST00000555634 TRHP20396 242 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-220ENST00000555634 GCC2Q8IWJ2 1684 aa16.91■□□□□ 0.3
SHMT2-220ENST00000555634 DAPK1P53355 1430 aa16.91■□□□□ 0.3
SHMT2-220ENST00000555634 AKNAQ7Z591 1439 aa16.91■□□□□ 0.3
SHMT2-220ENST00000555634 ZNF518AQ6AHZ1 1483 aa16.9■□□□□ 0.3
SHMT2-220ENST00000555634 RICTORQ6R327 1708 aa16.9■□□□□ 0.3
SHMT2-220ENST00000555634 MAST1Q9Y2H9 1570 aa16.89■□□□□ 0.3
SHMT2-220ENST00000555634 RSPH4AQ5TD94 716 aa16.89■□□□□ 0.29
SHMT2-220ENST00000555634 HECW2Q9P2P5 1572 aa16.88■□□□□ 0.29
SHMT2-220ENST00000555634 PLXNC1O60486 1568 aa16.87■□□□□ 0.29
SHMT2-220ENST00000555634 INO80Q9ULG1 1556 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-220ENST00000555634 ITGAEP38570 1179 aa16.86■□□□□ 0.29
SHMT2-220ENST00000555634 POGZQ7Z3K3 1410 aa16.86■□□□□ 0.29
SHMT2-220ENST00000555634 DENND4BO75064 1496 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-220ENST00000555634 C9orf84Q5VXU9 1444 aa16.85■□□□□ 0.29
SHMT2-220ENST00000555634 SCAPERQ9BY12 1400 aa16.85■□□□□ 0.29
SHMT2-220ENST00000555634 KDM5CP41229 1560 aa16.85■□□□□ 0.29
SHMT2-220ENST00000555634 TSPY4P0CV99 314 aa16.84■□□□□ 0.29
SHMT2-220ENST00000555634 TSPY10P0CW01 314 aa16.84■□□□□ 0.29
SHMT2-220ENST00000555634 PCGF6Q9BYE7 350 aa16.84■□□□□ 0.29
SHMT2-220ENST00000555634 ZNF644Q9H582 1327 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-220ENST00000555634 KDM6BO15054 1643 aa16.84■□□□□ 0.29
SHMT2-220ENST00000555634 ATP7AQ04656 1500 aa16.83■□□□□ 0.28
SHMT2-220ENST00000555634 ZFYVE16Q7Z3T8 1539 aa16.83■□□□□ 0.28
SHMT2-220ENST00000555634 MBD5Q9P267 1494 aa16.83■□□□□ 0.28
SHMT2-220ENST00000555634 ABCC5O15440 1437 aa16.82■□□□□ 0.28
SHMT2-220ENST00000555634 ZMYM4Q5VZL5 1548 aa16.81■□□□□ 0.28
SHMT2-220ENST00000555634 ADGRL2O95490 1459 aa16.81■□□□□ 0.28
SHMT2-220ENST00000555634 ANKRD30AQ9BXX3 1397 aa16.81■□□□□ 0.28
SHMT2-220ENST00000555634 ARHGEF12Q9NZN5 1544 aa16.8■□□□□ 0.28
SHMT2-220ENST00000555634 ROCK1Q13464 1354 aa16.8■□□□□ 0.28
SHMT2-220ENST00000555634 HNRNPMP52272 730 aaKnown RBP eCLIP16.79■□□□□ 0.28
SHMT2-220ENST00000555634 MYT1LQ9UL68 1186 aa16.79■□□□□ 0.28
SHMT2-220ENST00000555634 FRMPD1Q5SYB0 1578 aa16.79■□□□□ 0.28
SHMT2-220ENST00000555634 KIDINS220Q9ULH0 1771 aa16.78■□□□□ 0.28
SHMT2-220ENST00000555634 RTEL1-TNFRSF6BF6WH68 1400 aa16.77■□□□□ 0.27
SHMT2-220ENST00000555634 TRAPPC8Q9Y2L5 1435 aa16.77■□□□□ 0.27
SHMT2-220ENST00000555634 SPAG9O60271 1321 aaKnown RBP16.76■□□□□ 0.27
SHMT2-220ENST00000555634 EIF2AK4Q9P2K8 1649 aaKnown RBP16.76■□□□□ 0.27
SHMT2-220ENST00000555634 HFM1A2PYH4 1435 aa16.76■□□□□ 0.27
SHMT2-220ENST00000555634 DUOX2Q9NRD8 1548 aa16.75■□□□□ 0.27
SHMT2-220ENST00000555634 ABCA6Q8N139 1617 aa16.74■□□□□ 0.27
SHMT2-220ENST00000555634 MAGI2Q86UL8 1455 aa16.74■□□□□ 0.27
SHMT2-220ENST00000555634 MLH3Q9UHC1 1453 aa16.74■□□□□ 0.27
SHMT2-220ENST00000555634 ARHGEF40Q8TER5 1519 aa16.74■□□□□ 0.27
SHMT2-220ENST00000555634 ACIN1Q9UKV3 1341 aaKnown RBP16.73■□□□□ 0.27
SHMT2-220ENST00000555634 ILDR1Q86SU0 546 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-220ENST00000555634 CHIC2Q9UKJ5 165 aa16.72■□□□□ 0.27
SHMT2-220ENST00000555634 KIF15Q9NS87 1388 aa16.72■□□□□ 0.27
SHMT2-220ENST00000555634 PTPRKQ15262 1439 aa16.71■□□□□ 0.27
SHMT2-220ENST00000555634 DIP2CQ9Y2E4 1556 aa16.71■□□□□ 0.27
SHMT2-220ENST00000555634 NCOA1Q15788 1441 aa16.7■□□□□ 0.26
SHMT2-220ENST00000555634 SETD5Q9C0A6 1442 aa16.7■□□□□ 0.26
SHMT2-220ENST00000555634 ERBINQ96RT1 1412 aa16.7■□□□□ 0.26
SHMT2-220ENST00000555634 AFAP1Q8N556 730 aa16.68■□□□□ 0.26
SHMT2-220ENST00000555634 NAIPQ13075 1403 aa16.68■□□□□ 0.26
SHMT2-220ENST00000555634 BCORL1Q5H9F3 1711 aa16.67■□□□□ 0.26
SHMT2-220ENST00000555634 REREQ9P2R6 1566 aa16.67■□□□□ 0.26
SHMT2-220ENST00000555634 RRP7BPQ9NSQ0 103 aa16.66■□□□□ 0.26
SHMT2-220ENST00000555634 ANKRD50Q9ULJ7 1429 aa16.66■□□□□ 0.26
SHMT2-220ENST00000555634 UNC13BO14795 1591 aa16.65■□□□□ 0.26
SHMT2-220ENST00000555634 RAPGEF3O95398 923 aa16.65■□□□□ 0.26
SHMT2-220ENST00000555634 A2MP01023 1474 aa16.65■□□□□ 0.26
SHMT2-220ENST00000555634 RAB3GAP2Q9H2M9 1393 aa16.64■□□□□ 0.26
SHMT2-220ENST00000555634 DEPDC5O75140 1603 aa16.63■□□□□ 0.25
SHMT2-220ENST00000555634 RNF17Q9BXT8 1623 aaKnown RBP16.63■□□□□ 0.25
SHMT2-220ENST00000555634 ZC3H13Q5T200 1668 aaKnown RBP16.62■□□□□ 0.25
SHMT2-220ENST00000555634 ATP10AO60312 1499 aa16.61■□□□□ 0.25
SHMT2-220ENST00000555634 COL17A1Q9UMD9 1497 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-220ENST00000555634 IQGAP3Q86VI3 1631 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms