RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 WDR7Q9Y4E6 1490 aa15.11■□□□□ 0.01
NEK9-205ENST00000555405 ARHGAP5Q13017 1502 aa15.1■□□□□ 0.01
NEK9-205ENST00000555405 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.07■□□□□ 03e-8■□□□□ 8.7
NEK9-205ENST00000555405 PTPRKQ15262 1439 aa15.07■□□□□ 0
NEK9-205ENST00000555405 CD109Q6YHK3 1445 aa15.07■□□□□ 0
NEK9-205ENST00000555405 PTPN23Q9H3S7 1636 aa15.06■□□□□ 0
NEK9-205ENST00000555405 RAPGEF3O95398 923 aa15.05■□□□□ 0
NEK9-205ENST00000555405 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.05■□□□□ -0
NEK9-205ENST00000555405 MIA2Q96PC5 1412 aa15.05■□□□□ -0
NEK9-205ENST00000555405 ABCC10Q5T3U5 1492 aa15.04■□□□□ -0
NEK9-205ENST00000555405 RAB3GAP2Q9H2M9 1393 aa15.04■□□□□ -0
NEK9-205ENST00000555405 CAMSAP2Q08AD1 1489 aa15.03■□□□□ -0
NEK9-205ENST00000555405 TTC37Q6PGP7 1564 aa15.03■□□□□ -0
NEK9-205ENST00000555405 NEUROD1Q13562 356 aa15.02■□□□□ -0
NEK9-205ENST00000555405 PLCH2O75038 1416 aa15.01□□□□□ -0.01
NEK9-205ENST00000555405 SETD5Q9C0A6 1442 aa15.01□□□□□ -0.01
NEK9-205ENST00000555405 ABCC5O15440 1437 aa15□□□□□ -0.01
NEK9-205ENST00000555405 SPAG9O60271 1321 aaKnown RBP15□□□□□ -0.01
NEK9-205ENST00000555405 DAPK1P53355 1430 aa14.99□□□□□ -0.01
NEK9-205ENST00000555405 SCAPERQ9BY12 1400 aa14.99□□□□□ -0.01
NEK9-205ENST00000555405 HRCP23327 699 aa14.99□□□□□ -0.01
NEK9-205ENST00000555405 FOXD1Q16676 465 aa14.99□□□□□ -0.01
NEK9-205ENST00000555405 FANCAO15360 1455 aa14.99□□□□□ -0.01
NEK9-205ENST00000555405 ANKRD30AQ9BXX3 1397 aa14.95□□□□□ -0.02
NEK9-205ENST00000555405 TRAPPC8Q9Y2L5 1435 aa14.95□□□□□ -0.02
NEK9-205ENST00000555405 CDC42BPAQ5VT25 1732 aa14.95□□□□□ -0.02
NEK9-205ENST00000555405 SYCP2Q9BX26 1530 aa14.94□□□□□ -0.02
NEK9-205ENST00000555405 RSPH4AQ5TD94 716 aa14.94□□□□□ -0.02
NEK9-205ENST00000555405 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.94□□□□□ -0.02
NEK9-205ENST00000555405 SLC4A1APQ9BWU0 796 aaKnown RBP14.94□□□□□ -0.02
NEK9-205ENST00000555405 C9orf84Q5VXU9 1444 aa14.93□□□□□ -0.02
NEK9-205ENST00000555405 AKNAQ7Z591 1439 aa14.93□□□□□ -0.02
NEK9-205ENST00000555405 ADGRL1O94910 1474 aa14.93□□□□□ -0.02
NEK9-205ENST00000555405 SIN3AQ96ST3 1273 aa14.93□□□□□ -0.02
NEK9-205ENST00000555405 TCOF1Q13428 1488 aaKnown RBP14.93□□□□□ -0.02
NEK9-205ENST00000555405 TSPOAP1O95153 1857 aa14.92□□□□□ -0.02
NEK9-205ENST00000555405 ITSN2Q9NZM3 1697 aa14.92□□□□□ -0.02
NEK9-205ENST00000555405 KIF15Q9NS87 1388 aa14.92□□□□□ -0.02
NEK9-205ENST00000555405 MLECQ14165 292 aa14.91□□□□□ -0.02
NEK9-205ENST00000555405 GGT6Q6P531 493 aa14.91□□□□□ -0.02
NEK9-205ENST00000555405 NAIPQ13075 1403 aa14.91□□□□□ -0.02
NEK9-205ENST00000555405 KIF3BO15066 747 aa14.91□□□□□ -0.02
NEK9-205ENST00000555405 CDC42BPBQ9Y5S2 1711 aa14.9□□□□□ -0.02
NEK9-205ENST00000555405 PLPPR3Q6T4P5 718 aa14.9□□□□□ -0.02
NEK9-205ENST00000555405 ARHGEF12Q9NZN5 1544 aa14.9□□□□□ -0.02
NEK9-205ENST00000555405 SAMD9LQ8IVG5 1584 aa14.89□□□□□ -0.03
NEK9-205ENST00000555405 MYO5CQ9NQX4 1742 aa14.89□□□□□ -0.03
NEK9-205ENST00000555405 CCDC141Q6ZP82 1450 aa14.89□□□□□ -0.03
NEK9-205ENST00000555405 NCOA1Q15788 1441 aa14.88□□□□□ -0.03
NEK9-205ENST00000555405 MBD5Q9P267 1494 aa14.88□□□□□ -0.03
NEK9-205ENST00000555405 PREX2Q70Z35 1606 aa14.87□□□□□ -0.03
NEK9-205ENST00000555405 DHX57Q6P158 1386 aaKnown RBP14.87□□□□□ -0.03
NEK9-205ENST00000555405 HFM1A2PYH4 1435 aa14.87□□□□□ -0.03
NEK9-205ENST00000555405 MPHOSPH9Q99550 1183 aa14.87□□□□□ -0.03
NEK9-205ENST00000555405 NUP155O75694 1391 aa14.86□□□□□ -0.03
NEK9-205ENST00000555405 ARID4BQ4LE39 1312 aaPredicted RBP14.86□□□□□ -0.03
NEK9-205ENST00000555405 ANKRD50Q9ULJ7 1429 aa14.86□□□□□ -0.03
NEK9-205ENST00000555405 PLEKHH2Q8IVE3 1493 aa14.85□□□□□ -0.03
NEK9-205ENST00000555405 MAPKBP1O60336 1514 aa14.85□□□□□ -0.03
NEK9-205ENST00000555405 ZEB1P37275 1124 aaPredicted RBP14.85□□□□□ -0.03
NEK9-205ENST00000555405 PKD2Q13563 968 aa14.84□□□□□ -0.03
NEK9-205ENST00000555405 ABCA9Q8IUA7 1624 aa14.84□□□□□ -0.03
NEK9-205ENST00000555405 KIAA1107Q9UPP5 1409 aa14.83□□□□□ -0.04
NEK9-205ENST00000555405 DNMT1P26358 1616 aaKnown RBP14.83□□□□□ -0.04
NEK9-205ENST00000555405 DENND4BO75064 1496 aaPredicted RBP14.81□□□□□ -0.04
NEK9-205ENST00000555405 ROCK1Q13464 1354 aa14.8□□□□□ -0.04
NEK9-205ENST00000555405 KDM6BO15054 1643 aa14.79□□□□□ -0.04
NEK9-205ENST00000555405 DIP2BQ9P265 1576 aa14.79□□□□□ -0.04
NEK9-205ENST00000555405 ABCC1P33527 1531 aa14.78□□□□□ -0.04
NEK9-205ENST00000555405 ZNF326Q5BKZ1 582 aaKnown RBP14.77□□□□□ -0.04
NEK9-205ENST00000555405 SENP3Q9H4L4 574 aaPredicted RBP14.77□□□□□ -0.05
NEK9-205ENST00000555405 RGL3Q3MIN7 710 aa14.75□□□□□ -0.05
NEK9-205ENST00000555405 ZNF518AQ6AHZ1 1483 aa14.75□□□□□ -0.05
NEK9-205ENST00000555405 CHGAP10645 457 aaKnown RBP14.74□□□□□ -0.05
NEK9-205ENST00000555405 YEATS2Q9ULM3 1422 aa14.74□□□□□ -0.05
NEK9-205ENST00000555405 ESF1Q9H501 851 aaKnown RBP14.74□□□□□ -0.05
NEK9-205ENST00000555405 TEX14Q8IWB6 1497 aa14.73□□□□□ -0.05
NEK9-205ENST00000555405 NEO1Q92859 1461 aa14.73□□□□□ -0.05
NEK9-205ENST00000555405 POGZQ7Z3K3 1410 aa14.73□□□□□ -0.05
NEK9-205ENST00000555405 WASHC2CQ9Y4E1 1318 aa14.73□□□□□ -0.05
NEK9-205ENST00000555405 KDM2AQ9Y2K7 1162 aa14.72□□□□□ -0.05
NEK9-205ENST00000555405 ARHGEF5Q12774 1597 aa14.72□□□□□ -0.05
NEK9-205ENST00000555405 COL17A1Q9UMD9 1497 aaPredicted RBP14.72□□□□□ -0.05
NEK9-205ENST00000555405 SHANK2Q9UPX8 1470 aa14.7□□□□□ -0.06
NEK9-205ENST00000555405 DHX29Q7Z478 1369 aaKnown RBP14.7□□□□□ -0.06
NEK9-205ENST00000555405 ADGRL2O95490 1459 aa14.7□□□□□ -0.06
NEK9-205ENST00000555405 ARAP3Q8WWN8 1544 aa14.7□□□□□ -0.06
NEK9-205ENST00000555405 ATP7AQ04656 1500 aa14.69□□□□□ -0.06
NEK9-205ENST00000555405 TONSLQ96HA7 1378 aa14.69□□□□□ -0.06
NEK9-205ENST00000555405 KANK1Q14678 1352 aa14.68□□□□□ -0.06
NEK9-205ENST00000555405 GLI2P10070 1586 aa14.68□□□□□ -0.06
NEK9-205ENST00000555405 MAP3K4Q9Y6R4 1608 aa14.67□□□□□ -0.06
NEK9-205ENST00000555405 A2MP01023 1474 aa14.66□□□□□ -0.06
NEK9-205ENST00000555405 RTEL1-TNFRSF6BF6WH68 1400 aa14.66□□□□□ -0.06
NEK9-205ENST00000555405 HIRIP3Q9BW71 556 aaPredicted RBP14.65□□□□□ -0.06
NEK9-205ENST00000555405 KIF13AQ9H1H9 1805 aa14.65□□□□□ -0.06
NEK9-205ENST00000555405 ZFYVE16Q7Z3T8 1539 aa14.64□□□□□ -0.07
NEK9-205ENST00000555405 DUOX2Q9NRD8 1548 aa14.64□□□□□ -0.07
NEK9-205ENST00000555405 CROCC2H7BZ55 1655 aa14.64□□□□□ -0.07
NEK9-205ENST00000555405 ADGBQ8N7X0 1667 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms