RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 SCAPERQ9BY12 1400 aa19.08■□□□□ 0.65
VRK1-204ENST00000555351 CEP162Q5TB80 1403 aa19.07■□□□□ 0.64
VRK1-204ENST00000555351 PREX2Q70Z35 1606 aa19.07■□□□□ 0.64
VRK1-204ENST00000555351 ARHGAP5Q13017 1502 aa19.06■□□□□ 0.64
VRK1-204ENST00000555351 ZFYVE16Q7Z3T8 1539 aa19.05■□□□□ 0.64
VRK1-204ENST00000555351 CDC42BPBQ9Y5S2 1711 aa19.05■□□□□ 0.64
VRK1-204ENST00000555351 ADAMTSL3P82987 1691 aa19.05■□□□□ 0.64
VRK1-204ENST00000555351 ZNF518AQ6AHZ1 1483 aa19.03■□□□□ 0.64
VRK1-204ENST00000555351 BCORL1Q5H9F3 1711 aa19.03■□□□□ 0.64
VRK1-204ENST00000555351 KDM5CP41229 1560 aa19.01■□□□□ 0.63
VRK1-204ENST00000555351 CDC42BPAQ5VT25 1732 aa19■□□□□ 0.63
VRK1-204ENST00000555351 YEATS2Q9ULM3 1422 aa18.99■□□□□ 0.63
VRK1-204ENST00000555351 ABCC1P33527 1531 aa18.98■□□□□ 0.63
VRK1-204ENST00000555351 ATP10AO60312 1499 aa18.97■□□□□ 0.63
VRK1-204ENST00000555351 ARID4BQ4LE39 1312 aaPredicted RBP18.96■□□□□ 0.63
VRK1-204ENST00000555351 MTUS2Q5JR59 1369 aa18.95■□□□□ 0.62
VRK1-204ENST00000555351 PTPRMP28827 1452 aa18.95■□□□□ 0.62
VRK1-204ENST00000555351 MLH3Q9UHC1 1453 aa18.95■□□□□ 0.62
VRK1-204ENST00000555351 EHBP1L1Q8N3D4 1523 aa18.95■□□□□ 0.62
VRK1-204ENST00000555351 GPATCH8Q9UKJ3 1502 aaKnown RBP18.95■□□□□ 0.62
VRK1-204ENST00000555351 HECW2Q9P2P5 1572 aa18.94■□□□□ 0.62
VRK1-204ENST00000555351 ITSN2Q9NZM3 1697 aa18.94■□□□□ 0.62
VRK1-204ENST00000555351 REREQ9P2R6 1566 aa18.93■□□□□ 0.62
VRK1-204ENST00000555351 C9orf84Q5VXU9 1444 aa18.93■□□□□ 0.62
VRK1-204ENST00000555351 MADDQ8WXG6 1647 aa18.92■□□□□ 0.62
VRK1-204ENST00000555351 PLEKHH2Q8IVE3 1493 aa18.91■□□□□ 0.62
VRK1-204ENST00000555351 ARHGEF12Q9NZN5 1544 aa18.91■□□□□ 0.62
VRK1-204ENST00000555351 AFAP1Q8N556 730 aa18.91■□□□□ 0.62
VRK1-204ENST00000555351 SIGLEC1Q9BZZ2 1709 aa18.91■□□□□ 0.62
VRK1-204ENST00000555351 CCNB3Q8WWL7 1395 aa18.9■□□□□ 0.62
VRK1-204ENST00000555351 VPS8Q8N3P4 1428 aa18.9■□□□□ 0.62
VRK1-204ENST00000555351 KIAA1107Q9UPP5 1409 aa18.9■□□□□ 0.62
VRK1-204ENST00000555351 SAMD9LQ8IVG5 1584 aa18.89■□□□□ 0.62
VRK1-204ENST00000555351 TRAPPC8Q9Y2L5 1435 aa18.89■□□□□ 0.61
VRK1-204ENST00000555351 LOC105371045A0A1W2PR82 267 aa18.88■□□□□ 0.61
VRK1-204ENST00000555351 DIP2CQ9Y2E4 1556 aa18.88■□□□□ 0.61
VRK1-204ENST00000555351 CFDP1Q9UEE9 299 aaPredicted RBP18.86■□□□□ 0.61
VRK1-204ENST00000555351 RIMS1Q86UR5 1692 aaKnown RBP18.85■□□□□ 0.61
VRK1-204ENST00000555351 TIAM1Q13009 1591 aa18.85■□□□□ 0.61
VRK1-204ENST00000555351 ABCA6Q8N139 1617 aa18.85■□□□□ 0.61
VRK1-204ENST00000555351 AGLP35573 1532 aa18.84■□□□□ 0.61
VRK1-204ENST00000555351 MAP3K1Q13233 1512 aa18.84■□□□□ 0.61
VRK1-204ENST00000555351 SYCP2Q9BX26 1530 aa18.84■□□□□ 0.61
VRK1-204ENST00000555351 KIDINS220Q9ULH0 1771 aa18.83■□□□□ 0.61
VRK1-204ENST00000555351 SUPT6HQ7KZ85 1726 aaKnown RBP18.83■□□□□ 0.61
VRK1-204ENST00000555351 FER1L4A9Z1Z3 1794 aa18.83■□□□□ 0.6
VRK1-204ENST00000555351 MYT1LQ9UL68 1186 aa18.81■□□□□ 0.6
VRK1-204ENST00000555351 ZNF777Q9ULD5 760 aaPredicted RBP18.81■□□□□ 0.6
VRK1-204ENST00000555351 NCOA2Q15596 1464 aa18.79■□□□□ 0.6
VRK1-204ENST00000555351 INO80Q9ULG1 1556 aaPredicted RBP18.78■□□□□ 0.6
VRK1-204ENST00000555351 HNRNPMP52272 730 aaKnown RBP eCLIP18.78■□□□□ 0.64e-7■■□□□ 14.4
VRK1-204ENST00000555351 LRRC9Q6ZRR7 1453 aa18.77■□□□□ 0.6
VRK1-204ENST00000555351 SPAG9O60271 1321 aaKnown RBP18.77■□□□□ 0.6
VRK1-204ENST00000555351 ATP7AQ04656 1500 aa18.77■□□□□ 0.6
VRK1-204ENST00000555351 MLECQ14165 292 aa18.76■□□□□ 0.59
VRK1-204ENST00000555351 MBD5Q9P267 1494 aa18.76■□□□□ 0.59
VRK1-204ENST00000555351 RTEL1-TNFRSF6BF6WH68 1400 aa18.74■□□□□ 0.59
VRK1-204ENST00000555351 LMTK3Q96Q04 1460 aa18.73■□□□□ 0.59
VRK1-204ENST00000555351 RSPH4AQ5TD94 716 aa18.73■□□□□ 0.59
VRK1-204ENST00000555351 PLXNC1O60486 1568 aa18.72■□□□□ 0.59
VRK1-204ENST00000555351 ADGBQ8N7X0 1667 aa18.71■□□□□ 0.59
VRK1-204ENST00000555351 CNTLNQ9NXG0 1405 aa18.71■□□□□ 0.59
VRK1-204ENST00000555351 ZNF644Q9H582 1327 aaPredicted RBP18.7■□□□□ 0.58
VRK1-204ENST00000555351 A2MP01023 1474 aa18.69■□□□□ 0.58
VRK1-204ENST00000555351 CAMSAP2Q08AD1 1489 aa18.69■□□□□ 0.58
VRK1-204ENST00000555351 ARHGEF5Q12774 1597 aa18.68■□□□□ 0.58
VRK1-204ENST00000555351 CCDC141Q6ZP82 1450 aa18.68■□□□□ 0.58
VRK1-204ENST00000555351 PREX1Q8TCU6 1659 aa18.66■□□□□ 0.58
VRK1-204ENST00000555351 MIA2Q96PC5 1412 aa18.66■□□□□ 0.58
VRK1-204ENST00000555351 ESF1Q9H501 851 aaKnown RBP18.66■□□□□ 0.58
VRK1-204ENST00000555351 MROH2AA6NES4 1674 aa18.66■□□□□ 0.58
VRK1-204ENST00000555351 PPP6R1Q9UPN7 881 aa18.65■□□□□ 0.58
VRK1-204ENST00000555351 KANK4Q5T7N3 995 aaPredicted RBP18.64■□□□□ 0.57
VRK1-204ENST00000555351 SETD1BQ9UPS6 1966 aaKnown RBP18.64■□□□□ 0.57
VRK1-204ENST00000555351 C3P01024 1663 aa18.63■□□□□ 0.57
VRK1-204ENST00000555351 APLP2Q06481 763 aa18.63■□□□□ 0.57
VRK1-204ENST00000555351 MYOM3Q5VTT5 1437 aa18.63■□□□□ 0.57
VRK1-204ENST00000555351 DHX29Q7Z478 1369 aaKnown RBP18.61■□□□□ 0.57
VRK1-204ENST00000555351 MAST1Q9Y2H9 1570 aa18.59■□□□□ 0.57
VRK1-204ENST00000555351 NPATQ14207 1427 aa18.59■□□□□ 0.57
VRK1-204ENST00000555351 CEBPAP49715 358 aaPredicted RBP18.59■□□□□ 0.57
VRK1-204ENST00000555351 FAM135AQ9P2D6 1515 aa18.59■□□□□ 0.57
VRK1-204ENST00000555351 UHRF1BP1Q6BDS2 1440 aa18.58■□□□□ 0.57
VRK1-204ENST00000555351 TSPY4P0CV99 314 aa18.58■□□□□ 0.56
VRK1-204ENST00000555351 TSPY10P0CW01 314 aa18.58■□□□□ 0.56
VRK1-204ENST00000555351 PLPPR3Q6T4P5 718 aa18.58■□□□□ 0.56
VRK1-204ENST00000555351 ZMYM3Q14202 1370 aa18.55■□□□□ 0.56
VRK1-204ENST00000555351 CLTCQ00610 1675 aaKnown RBP18.54■□□□□ 0.56
VRK1-204ENST00000555351 HSPA2P54652 639 aa18.53■□□□□ 0.56
VRK1-204ENST00000555351 GGT6Q6P531 493 aa18.52■□□□□ 0.56
VRK1-204ENST00000555351 PTPN23Q9H3S7 1636 aa18.5■□□□□ 0.55
VRK1-204ENST00000555351 SHANK2Q9UPX8 1470 aa18.5■□□□□ 0.55
VRK1-204ENST00000555351 EIF2AK4Q9P2K8 1649 aaKnown RBP18.49■□□□□ 0.55
VRK1-204ENST00000555351 TCOF1Q13428 1488 aaKnown RBP18.49■□□□□ 0.55
VRK1-204ENST00000555351 FGD6Q6ZV73 1430 aa18.49■□□□□ 0.55
VRK1-204ENST00000555351 KIF3BO15066 747 aa18.48■□□□□ 0.55
VRK1-204ENST00000555351 DMRT2Q9Y5R5 561 aa18.48■□□□□ 0.55
VRK1-204ENST00000555351 KDM5DQ9BY66 1539 aa18.48■□□□□ 0.55
VRK1-204ENST00000555351 PTPRKQ15262 1439 aa18.48■□□□□ 0.55
VRK1-204ENST00000555351 RNF17Q9BXT8 1623 aaKnown RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms