RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 GORABQ5T7V8 394 aa8.73□□□□□ -1.01
SYNE2-216ENST00000555002 CEP89Q96ST8 783 aa8.73□□□□□ -1.01
SYNE2-216ENST00000555002 CHMP4BQ9H444 224 aaKnown RBP8.73□□□□□ -1.01
SYNE2-216ENST00000555002 TAF7LQ5H9L4 462 aa8.72□□□□□ -1.01
SYNE2-216ENST00000555002 MARCH6O60337 910 aa8.72□□□□□ -1.01
SYNE2-216ENST00000555002 MIER1Q8N108 512 aa8.72□□□□□ -1.01
SYNE2-216ENST00000555002 RTF1Q92541 710 aaKnown RBP8.72□□□□□ -1.01
SYNE2-216ENST00000555002 NOP58Q9Y2X3 529 aaKnown RBP8.71□□□□□ -1.01
SYNE2-216ENST00000555002 SUPT16HQ9Y5B9 1047 aaKnown RBP8.71□□□□□ -1.02
SYNE2-216ENST00000555002 TCEAL9Q9UHQ7 104 aa8.7□□□□□ -1.02
SYNE2-216ENST00000555002 SRPK2P78362 688 aaKnown RBP8.7□□□□□ -1.02
SYNE2-216ENST00000555002 TOMM22Q9NS69 142 aa8.7□□□□□ -1.02
SYNE2-216ENST00000555002 PES1O00541 588 aaKnown RBP8.7□□□□□ -1.02
SYNE2-216ENST00000555002 TPM4P67936 248 aa8.7□□□□□ -1.02
SYNE2-216ENST00000555002 CARD11Q9BXL7 1154 aa8.69□□□□□ -1.02
SYNE2-216ENST00000555002 NOL8Q76FK4 1167 aaKnown RBP8.69□□□□□ -1.02
SYNE2-216ENST00000555002 MS4A1P11836 297 aa8.69□□□□□ -1.02
SYNE2-216ENST00000555002 GPATCH3Q96I76 525 aa8.69□□□□□ -1.02
SYNE2-216ENST00000555002 GZF1Q9H116 711 aaPredicted RBP8.69□□□□□ -1.02
SYNE2-216ENST00000555002 STK26Q9P289 416 aa8.68□□□□□ -1.02
SYNE2-216ENST00000555002 RAD21O60216 631 aa8.68□□□□□ -1.02
SYNE2-216ENST00000555002 MSH5O43196 834 aa8.68□□□□□ -1.02
SYNE2-216ENST00000555002 PLEKHD1A6NEE1 506 aa8.67□□□□□ -1.02
SYNE2-216ENST00000555002 KLHL34Q8N239 644 aa8.67□□□□□ -1.02
SYNE2-216ENST00000555002 B4GALNT3Q6L9W6 998 aa8.67□□□□□ -1.02
SYNE2-216ENST00000555002 FRAT2O75474 233 aaPredicted RBP8.67□□□□□ -1.02
SYNE2-216ENST00000555002 TPM3P06753 285 aa8.67□□□□□ -1.02
SYNE2-216ENST00000555002 CWC22Q9HCG8 908 aaKnown RBP8.66□□□□□ -1.02
SYNE2-216ENST00000555002 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.66□□□□□ -1.02
SYNE2-216ENST00000555002 FOXD4L5Q5VV16 416 aaPredicted RBP8.66□□□□□ -1.02
SYNE2-216ENST00000555002 MORC1Q86VD1 984 aa8.66□□□□□ -1.02
SYNE2-216ENST00000555002 FOXD4L4Q8WXT5 416 aaPredicted RBP8.66□□□□□ -1.02
SYNE2-216ENST00000555002 FBXW7Q969H0 707 aa8.66□□□□□ -1.02
SYNE2-216ENST00000555002 CCAR2Q8N163 923 aaKnown RBP8.66□□□□□ -1.02
SYNE2-216ENST00000555002 GTF2E1P29083 439 aaPredicted RBP8.65□□□□□ -1.02
SYNE2-216ENST00000555002 CTDP1Q9Y5B0 961 aaPredicted RBP8.65□□□□□ -1.02
SYNE2-216ENST00000555002 TRIM6-TRIM34B2RNG4 842 aa8.65□□□□□ -1.02
SYNE2-216ENST00000555002 HTATSF1O43719 755 aaKnown RBP8.65□□□□□ -1.02
SYNE2-216ENST00000555002 ITPRIPQ8IWB1 547 aa8.64□□□□□ -1.03
SYNE2-216ENST00000555002 TRIM34Q9BYJ4 488 aa8.64□□□□□ -1.03
SYNE2-216ENST00000555002 FOXD4L1Q9NU39 408 aa8.64□□□□□ -1.03
SYNE2-216ENST00000555002 SETQ01105 290 aaPredicted RBP8.64□□□□□ -1.03
SYNE2-216ENST00000555002 TPD52L1Q16890 204 aaPredicted RBP8.64□□□□□ -1.03
SYNE2-216ENST00000555002 CCDC34Q96HJ3 373 aa8.64□□□□□ -1.03
SYNE2-216ENST00000555002 CALRP27797 417 aaKnown RBP8.63□□□□□ -1.03
SYNE2-216ENST00000555002 GBP4Q96PP9 640 aa8.63□□□□□ -1.03
SYNE2-216ENST00000555002 KANK1Q14678 1352 aa8.63□□□□□ -1.03
SYNE2-216ENST00000555002 CFDP1Q9UEE9 299 aaPredicted RBP8.62□□□□□ -1.03
SYNE2-216ENST00000555002 ZCCHC6Q5VYS8 1495 aaKnown RBP8.62□□□□□ -1.03
SYNE2-216ENST00000555002 SLKQ9H2G2 1235 aaPredicted RBP8.62□□□□□ -1.03
SYNE2-216ENST00000555002 SYAP1Q96A49 352 aaPredicted RBP8.61□□□□□ -1.03
SYNE2-216ENST00000555002 SAMD1Q6SPF0 538 aaPredicted RBP8.61□□□□□ -1.03
SYNE2-216ENST00000555002 ERCC6Q03468 1493 aa8.61□□□□□ -1.03
SYNE2-216ENST00000555002 PPP4R2Q9NY27 417 aa8.61□□□□□ -1.03
SYNE2-216ENST00000555002 LTV1Q96GA3 475 aaPredicted RBP8.6□□□□□ -1.03
SYNE2-216ENST00000555002 MEX3CQ5U5Q3 659 aaKnown RBP8.6□□□□□ -1.03
SYNE2-216ENST00000555002 RSF1Q96T23 1441 aaPredicted RBP8.6□□□□□ -1.03
SYNE2-216ENST00000555002 DEKP35659 375 aaKnown RBP8.59□□□□□ -1.03
SYNE2-216ENST00000555002 RRP12Q5JTH9 1297 aaKnown RBP8.59□□□□□ -1.03
SYNE2-216ENST00000555002 TSR1Q2NL82 804 aaKnown RBP8.59□□□□□ -1.03
SYNE2-216ENST00000555002 USP35Q9P2H5 1018 aa8.59□□□□□ -1.03
SYNE2-216ENST00000555002 EIF4G1Q04637 1599 aaKnown RBP8.59□□□□□ -1.03
SYNE2-216ENST00000555002 SF3A1Q15459 793 aaKnown RBP8.58□□□□□ -1.04
SYNE2-216ENST00000555002 PCMTD1Q96MG8 357 aaPredicted RBP8.58□□□□□ -1.04
SYNE2-216ENST00000555002 HDGFP51858 240 aaKnown RBP8.58□□□□□ -1.04
SYNE2-216ENST00000555002 MFAP1P55081 439 aaKnown RBP8.58□□□□□ -1.04
SYNE2-216ENST00000555002 HDGFL2Q7Z4V5 671 aaPredicted RBP8.58□□□□□ -1.04
SYNE2-216ENST00000555002 STK31Q9BXU1 1019 aa8.58□□□□□ -1.04
SYNE2-216ENST00000555002 CLIP1P30622 1438 aa8.58□□□□□ -1.04
SYNE2-216ENST00000555002 IPO8O15397 1037 aaKnown RBP8.57□□□□□ -1.04
SYNE2-216ENST00000555002 SLC4A10Q6U841 1118 aa8.57□□□□□ -1.04
SYNE2-216ENST00000555002 AKAP17AQ02040 695 aaKnown RBP8.57□□□□□ -1.04
SYNE2-216ENST00000555002 TPM2P07951 284 aa8.57□□□□□ -1.04
SYNE2-216ENST00000555002 PHF23Q9BUL5 403 aaPredicted RBP8.57□□□□□ -1.04
SYNE2-216ENST00000555002 H3BQV1 296 aa8.56□□□□□ -1.04
SYNE2-216ENST00000555002 IFFO2Q5TF58 517 aa8.56□□□□□ -1.04
SYNE2-216ENST00000555002 CCDC43Q96MW1 224 aaKnown RBP8.56□□□□□ -1.04
SYNE2-216ENST00000555002 NOL10Q9BSC4 688 aaKnown RBP8.56□□□□□ -1.04
SYNE2-216ENST00000555002 TMF1P82094 1093 aa8.56□□□□□ -1.04
SYNE2-216ENST00000555002 KIF16BQ96L93 1317 aa8.56□□□□□ -1.04
SYNE2-216ENST00000555002 DHX16O60231 1041 aaKnown RBP8.56□□□□□ -1.04
SYNE2-216ENST00000555002 SPAG9O60271 1321 aaKnown RBP8.56□□□□□ -1.04
SYNE2-216ENST00000555002 MCTP1Q6DN14 999 aa8.56□□□□□ -1.04
SYNE2-216ENST00000555002 PTMSP20962 102 aa8.55□□□□□ -1.04
SYNE2-216ENST00000555002 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.55□□□□□ -1.04
SYNE2-216ENST00000555002 U2AF1L5P0DN76 240 aaPredicted RBP8.55□□□□□ -1.04
SYNE2-216ENST00000555002 U2AF1Q01081 240 aaKnown RBP eCLIP8.55□□□□□ -1.04
SYNE2-216ENST00000555002 CSPP1Q1MSJ5 1256 aa8.55□□□□□ -1.04
SYNE2-216ENST00000555002 PAF1Q8N7H5 531 aa8.55□□□□□ -1.04
SYNE2-216ENST00000555002 CFAP44Q96MT7 982 aa8.55□□□□□ -1.04
SYNE2-216ENST00000555002 FOXD4L6Q3SYB3 417 aaPredicted RBP8.54□□□□□ -1.04
SYNE2-216ENST00000555002 CCDC70Q6NSX1 233 aa8.54□□□□□ -1.04
SYNE2-216ENST00000555002 FOXD4L3Q6VB84 417 aaPredicted RBP8.54□□□□□ -1.04
SYNE2-216ENST00000555002 TPM1P09493 284 aa8.54□□□□□ -1.04
SYNE2-216ENST00000555002 DCAF11Q8TEB1 546 aa8.54□□□□□ -1.04
SYNE2-216ENST00000555002 CCDC180Q9P1Z9 1646 aa8.54□□□□□ -1.04
SYNE2-216ENST00000555002 FOSBP53539 338 aa8.53□□□□□ -1.04
SYNE2-216ENST00000555002 CALD1Q05682 793 aaKnown RBP8.53□□□□□ -1.04
SYNE2-216ENST00000555002 PHF14O94880 888 aa8.52□□□□□ -1.05
SYNE2-216ENST00000555002 CT47A1Q5JQC4 288 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms