RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 CDC42BPBQ9Y5S2 1711 aa20.91■□□□□ 0.94
SHMT2-211ENST00000554310 POGZQ7Z3K3 1410 aa20.9■□□□□ 0.94
SHMT2-211ENST00000554310 CDC42BPAQ5VT25 1732 aa20.9■□□□□ 0.94
SHMT2-211ENST00000554310 EFCAB2Q5VUJ9 269 aa20.89■□□□□ 0.93
SHMT2-211ENST00000554310 EHBP1L1Q8N3D4 1523 aa20.88■□□□□ 0.93
SHMT2-211ENST00000554310 KDM4FA0A1W2PPD8 638 aa20.88■□□□□ 0.93
SHMT2-211ENST00000554310 VPS8Q8N3P4 1428 aa20.87■□□□□ 0.93
SHMT2-211ENST00000554310 SCAPERQ9BY12 1400 aa20.87■□□□□ 0.93
SHMT2-211ENST00000554310 MAGI2Q86UL8 1455 aa20.86■□□□□ 0.93
SHMT2-211ENST00000554310 MTUS2Q5JR59 1369 aa20.85■□□□□ 0.93
SHMT2-211ENST00000554310 ZFYVE16Q7Z3T8 1539 aa20.84■□□□□ 0.93
SHMT2-211ENST00000554310 ABCC1P33527 1531 aa20.83■□□□□ 0.93
SHMT2-211ENST00000554310 ZNF518AQ6AHZ1 1483 aa20.82■□□□□ 0.92
SHMT2-211ENST00000554310 KDM5CP41229 1560 aa20.82■□□□□ 0.92
SHMT2-211ENST00000554310 TIAM1Q13009 1591 aa20.82■□□□□ 0.92
SHMT2-211ENST00000554310 ITSN2Q9NZM3 1697 aa20.81■□□□□ 0.92
SHMT2-211ENST00000554310 GPATCH8Q9UKJ3 1502 aaKnown RBP20.8■□□□□ 0.92
SHMT2-211ENST00000554310 HECW2Q9P2P5 1572 aa20.77■□□□□ 0.92
SHMT2-211ENST00000554310 SUPT6HQ7KZ85 1726 aaKnown RBP20.77■□□□□ 0.92
SHMT2-211ENST00000554310 YEATS2Q9ULM3 1422 aa20.77■□□□□ 0.91
SHMT2-211ENST00000554310 SAMD9LQ8IVG5 1584 aa20.76■□□□□ 0.91
SHMT2-211ENST00000554310 CCNB3Q8WWL7 1395 aa20.76■□□□□ 0.91
SHMT2-211ENST00000554310 BCORL1Q5H9F3 1711 aa20.75■□□□□ 0.91
SHMT2-211ENST00000554310 MAP3K1Q13233 1512 aa20.75■□□□□ 0.91
SHMT2-211ENST00000554310 ADAMTSL3P82987 1691 aa20.74■□□□□ 0.91
SHMT2-211ENST00000554310 ARHGEF12Q9NZN5 1544 aa20.73■□□□□ 0.91
SHMT2-211ENST00000554310 PLEKHH2Q8IVE3 1493 aa20.73■□□□□ 0.91
SHMT2-211ENST00000554310 SYCP2Q9BX26 1530 aa20.72■□□□□ 0.91
SHMT2-211ENST00000554310 SIGLEC1Q9BZZ2 1709 aa20.7■□□□□ 0.9
SHMT2-211ENST00000554310 NCOA2Q15596 1464 aa20.7■□□□□ 0.9
SHMT2-211ENST00000554310 MLH3Q9UHC1 1453 aa20.7■□□□□ 0.9
SHMT2-211ENST00000554310 C9orf84Q5VXU9 1444 aa20.7■□□□□ 0.9
SHMT2-211ENST00000554310 TRAPPC8Q9Y2L5 1435 aa20.7■□□□□ 0.9
SHMT2-211ENST00000554310 ATP10AO60312 1499 aa20.69■□□□□ 0.9
SHMT2-211ENST00000554310 LRRC9Q6ZRR7 1453 aa20.69■□□□□ 0.9
SHMT2-211ENST00000554310 DIP2CQ9Y2E4 1556 aa20.69■□□□□ 0.9
SHMT2-211ENST00000554310 CFDP1Q9UEE9 299 aaPredicted RBP20.69■□□□□ 0.9
SHMT2-211ENST00000554310 KIAA1107Q9UPP5 1409 aa20.69■□□□□ 0.9
SHMT2-211ENST00000554310 AFAP1Q8N556 730 aa20.68■□□□□ 0.9
SHMT2-211ENST00000554310 ARID4BQ4LE39 1312 aaPredicted RBP20.68■□□□□ 0.9
SHMT2-211ENST00000554310 REREQ9P2R6 1566 aa20.68■□□□□ 0.9
SHMT2-211ENST00000554310 ABCA6Q8N139 1617 aa20.67■□□□□ 0.9
SHMT2-211ENST00000554310 MADDQ8WXG6 1647 aa20.67■□□□□ 0.9
SHMT2-211ENST00000554310 ZNF777Q9ULD5 760 aaPredicted RBP20.66■□□□□ 0.9
SHMT2-211ENST00000554310 KIDINS220Q9ULH0 1771 aa20.65■□□□□ 0.9
SHMT2-211ENST00000554310 INO80Q9ULG1 1556 aaPredicted RBP20.62■□□□□ 0.89
SHMT2-211ENST00000554310 PTPRMP28827 1452 aa20.62■□□□□ 0.89
SHMT2-211ENST00000554310 RIMS1Q86UR5 1692 aaKnown RBP20.61■□□□□ 0.89
SHMT2-211ENST00000554310 FER1L4A9Z1Z3 1794 aa20.6■□□□□ 0.89
SHMT2-211ENST00000554310 ATP7AQ04656 1500 aa20.6■□□□□ 0.89
SHMT2-211ENST00000554310 MYT1LQ9UL68 1186 aa20.6■□□□□ 0.89
SHMT2-211ENST00000554310 CAMSAP2Q08AD1 1489 aa20.59■□□□□ 0.89
SHMT2-211ENST00000554310 AGLP35573 1532 aa20.58■□□□□ 0.88
SHMT2-211ENST00000554310 MBD5Q9P267 1494 aa20.56■□□□□ 0.88
SHMT2-211ENST00000554310 SPAG9O60271 1321 aaKnown RBP20.56■□□□□ 0.88
SHMT2-211ENST00000554310 HNRNPMP52272 730 aaKnown RBP eCLIP20.56■□□□□ 0.88
SHMT2-211ENST00000554310 APLP2Q06481 763 aa20.55■□□□□ 0.88
SHMT2-211ENST00000554310 ZNF644Q9H582 1327 aaPredicted RBP20.54■□□□□ 0.88
SHMT2-211ENST00000554310 KANK4Q5T7N3 995 aaPredicted RBP20.54■□□□□ 0.88
SHMT2-211ENST00000554310 CCDC141Q6ZP82 1450 aa20.53■□□□□ 0.88
SHMT2-211ENST00000554310 ARHGEF5Q12774 1597 aa20.53■□□□□ 0.88
SHMT2-211ENST00000554310 MYOM3Q5VTT5 1437 aa20.53■□□□□ 0.88
SHMT2-211ENST00000554310 ADGBQ8N7X0 1667 aa20.52■□□□□ 0.88
SHMT2-211ENST00000554310 PLXNC1O60486 1568 aa20.52■□□□□ 0.88
SHMT2-211ENST00000554310 MIA2Q96PC5 1412 aa20.51■□□□□ 0.87
SHMT2-211ENST00000554310 MLECQ14165 292 aa20.5■□□□□ 0.87
SHMT2-211ENST00000554310 RTEL1-TNFRSF6BF6WH68 1400 aa20.49■□□□□ 0.87
SHMT2-211ENST00000554310 RSPH4AQ5TD94 716 aa20.47■□□□□ 0.87
SHMT2-211ENST00000554310 A2MP01023 1474 aa20.47■□□□□ 0.87
SHMT2-211ENST00000554310 MAST1Q9Y2H9 1570 aa20.42■□□□□ 0.86
SHMT2-211ENST00000554310 PTPN23Q9H3S7 1636 aa20.41■□□□□ 0.86
SHMT2-211ENST00000554310 MROH2AA6NES4 1674 aa20.4■□□□□ 0.86
SHMT2-211ENST00000554310 CNTLNQ9NXG0 1405 aa20.4■□□□□ 0.86
SHMT2-211ENST00000554310 CROCC2H7BZ55 1655 aa20.38■□□□□ 0.85
SHMT2-211ENST00000554310 LMTK3Q96Q04 1460 aa20.38■□□□□ 0.85
SHMT2-211ENST00000554310 FGD6Q6ZV73 1430 aa20.38■□□□□ 0.85
SHMT2-211ENST00000554310 C3P01024 1663 aa20.38■□□□□ 0.85
SHMT2-211ENST00000554310 TCOF1Q13428 1488 aaKnown RBP20.37■□□□□ 0.85
SHMT2-211ENST00000554310 PREX1Q8TCU6 1659 aa20.36■□□□□ 0.85
SHMT2-211ENST00000554310 DHX29Q7Z478 1369 aaKnown RBP20.35■□□□□ 0.85
SHMT2-211ENST00000554310 TSPY4P0CV99 314 aa20.35■□□□□ 0.85
SHMT2-211ENST00000554310 TSPY10P0CW01 314 aa20.35■□□□□ 0.85
SHMT2-211ENST00000554310 ESF1Q9H501 851 aaKnown RBP20.35■□□□□ 0.85
SHMT2-211ENST00000554310 SHANK2Q9UPX8 1470 aa20.35■□□□□ 0.85
SHMT2-211ENST00000554310 DNMT1P26358 1616 aaKnown RBP20.34■□□□□ 0.85
SHMT2-211ENST00000554310 FAM135AQ9P2D6 1515 aa20.32■□□□□ 0.84
SHMT2-211ENST00000554310 CLTCQ00610 1675 aaKnown RBP20.32■□□□□ 0.84
SHMT2-211ENST00000554310 PLPPR3Q6T4P5 718 aa20.32■□□□□ 0.84
SHMT2-211ENST00000554310 EIF2AK4Q9P2K8 1649 aaKnown RBP20.31■□□□□ 0.84
SHMT2-211ENST00000554310 SETD1BQ9UPS6 1966 aaKnown RBP20.29■□□□□ 0.84
SHMT2-211ENST00000554310 ABCC5O15440 1437 aa20.28■□□□□ 0.84
SHMT2-211ENST00000554310 DAPK1P53355 1430 aa20.28■□□□□ 0.84
SHMT2-211ENST00000554310 PPP6R1Q9UPN7 881 aa20.28■□□□□ 0.84
SHMT2-211ENST00000554310 RNF17Q9BXT8 1623 aaKnown RBP20.27■□□□□ 0.84
SHMT2-211ENST00000554310 CEBPAP49715 358 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-211ENST00000554310 GGT6Q6P531 493 aa20.26■□□□□ 0.83
SHMT2-211ENST00000554310 KDM5DQ9BY66 1539 aa20.26■□□□□ 0.83
SHMT2-211ENST00000554310 DUOX2Q9NRD8 1548 aa20.26■□□□□ 0.83
SHMT2-211ENST00000554310 NPATQ14207 1427 aa20.26■□□□□ 0.83
SHMT2-211ENST00000554310 UHRF1BP1Q6BDS2 1440 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms