RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 P3H3Q8IVL6 736 aa29.25■■■□□ 2.27
NEK9-204ENST00000554258 MAGI2Q86UL8 1455 aa29.24■■■□□ 2.27
NEK9-204ENST00000554258 LTBP4Q8N2S1 1624 aa29.24■■■□□ 2.27
NEK9-204ENST00000554258 ARHGEF12Q9NZN5 1544 aa29.24■■■□□ 2.27
NEK9-204ENST00000554258 RAPGEF6Q8TEU7 1601 aa29.22■■■□□ 2.27
NEK9-204ENST00000554258 HECW1Q76N89 1606 aa29.19■■■□□ 2.26
NEK9-204ENST00000554258 ATP10AO60312 1499 aa29.1■■■□□ 2.25
NEK9-204ENST00000554258 C9orf84Q5VXU9 1444 aa29.09■■■□□ 2.25
NEK9-204ENST00000554258 NUP153P49790 1475 aaKnown RBP29.07■■■□□ 2.24
NEK9-204ENST00000554258 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.07■■■□□ 2.24
NEK9-204ENST00000554258 PLEKHD1A6NEE1 506 aa29.06■■■□□ 2.24
NEK9-204ENST00000554258 UBAP1LF5GYI3 381 aa29.06■■■□□ 2.24
NEK9-204ENST00000554258 SCAPERQ9BY12 1400 aa29.02■■■□□ 2.24
NEK9-204ENST00000554258 SAMD9Q5K651 1589 aa29.01■■■□□ 2.24
NEK9-204ENST00000554258 PRXQ9BXM0 1461 aa29■■■□□ 2.23
NEK9-204ENST00000554258 MED1Q15648 1581 aaPredicted RBP28.99■■■□□ 2.23
NEK9-204ENST00000554258 C3P01024 1663 aa28.99■■■□□ 2.23
NEK9-204ENST00000554258 NCOA1Q15788 1441 aa28.98■■■□□ 2.23
NEK9-204ENST00000554258 ZNF335Q9H4Z2 1342 aaPredicted RBP28.89■■■□□ 2.21
NEK9-204ENST00000554258 TRAPPC8Q9Y2L5 1435 aa28.88■■■□□ 2.21
NEK9-204ENST00000554258 CAMSAP1Q5T5Y3 1602 aa28.86■■■□□ 2.21
NEK9-204ENST00000554258 PLCH2O75038 1416 aa28.86■■■□□ 2.21
NEK9-204ENST00000554258 ESF1Q9H501 851 aaKnown RBP28.85■■■□□ 2.21
NEK9-204ENST00000554258 HSPA1LP34931 641 aa28.82■■■□□ 2.2
NEK9-204ENST00000554258 PHF23Q9BUL5 403 aaPredicted RBP28.81■■■□□ 2.2
NEK9-204ENST00000554258 SCAF1Q9H7N4 1312 aaKnown RBP28.8■■■□□ 2.2
NEK9-204ENST00000554258 MYT1LQ9UL68 1186 aa28.8■■■□□ 2.2
NEK9-204ENST00000554258 ZNF518AQ6AHZ1 1483 aa28.79■■■□□ 2.2
NEK9-204ENST00000554258 NCKAP5LQ9HCH0 1330 aa28.77■■■□□ 2.2
NEK9-204ENST00000554258 DIP2CQ9Y2E4 1556 aa28.77■■■□□ 2.2
NEK9-204ENST00000554258 EFCAB2Q5VUJ9 269 aa28.77■■■□□ 2.2
NEK9-204ENST00000554258 MYO5CQ9NQX4 1742 aa28.77■■■□□ 2.2
NEK9-204ENST00000554258 REREQ9P2R6 1566 aa28.75■■■□□ 2.19
NEK9-204ENST00000554258 KDM5CP41229 1560 aa28.74■■■□□ 2.19
NEK9-204ENST00000554258 PIP4K2BP78356 416 aa28.73■■■□□ 2.19
NEK9-204ENST00000554258 RANGAP1P46060 587 aaPredicted RBP28.72■■■□□ 2.19
NEK9-204ENST00000554258 AFAP1Q8N556 730 aa28.71■■■□□ 2.19
NEK9-204ENST00000554258 AGLP35573 1532 aa28.7■■■□□ 2.19
NEK9-204ENST00000554258 ABCA6Q8N139 1617 aa28.69■■■□□ 2.18
NEK9-204ENST00000554258 CNTLNQ9NXG0 1405 aa28.69■■■□□ 2.18
NEK9-204ENST00000554258 CDK13Q14004 1512 aaKnown RBP28.68■■■□□ 2.18
NEK9-204ENST00000554258 SUPT6HQ7KZ85 1726 aaKnown RBP28.66■■■□□ 2.18
NEK9-204ENST00000554258 NPATQ14207 1427 aa28.65■■■□□ 2.18
NEK9-204ENST00000554258 TOM1O60784 492 aa28.64■■■□□ 2.18
NEK9-204ENST00000554258 PKD2Q13563 968 aa28.64■■■□□ 2.18
NEK9-204ENST00000554258 PLA2R1Q13018 1463 aa28.61■■■□□ 2.17
NEK9-204ENST00000554258 MROH2AA6NES4 1674 aa28.61■■■□□ 2.17
NEK9-204ENST00000554258 ARHGAP5Q13017 1502 aa28.6■■■□□ 2.17
NEK9-204ENST00000554258 MLH3Q9UHC1 1453 aa28.59■■■□□ 2.17
NEK9-204ENST00000554258 PPP6R1Q9UPN7 881 aa28.58■■■□□ 2.17
NEK9-204ENST00000554258 ZNF142P52746 1687 aaPredicted RBP28.58■■■□□ 2.16
NEK9-204ENST00000554258 TCOF1Q13428 1488 aaKnown RBP28.57■■■□□ 2.16
NEK9-204ENST00000554258 MYO3AQ8NEV4 1616 aa28.55■■■□□ 2.16
NEK9-204ENST00000554258 KIF14Q15058 1648 aa28.52■■■□□ 2.16
NEK9-204ENST00000554258 ZMYM3Q14202 1370 aa28.51■■■□□ 2.16
NEK9-204ENST00000554258 CEP170BQ9Y4F5 1589 aaPredicted RBP28.51■■■□□ 2.15
NEK9-204ENST00000554258 CPS1P31327 1500 aa28.49■■■□□ 2.15
NEK9-204ENST00000554258 KIDINS220Q9ULH0 1771 aa28.45■■■□□ 2.14
NEK9-204ENST00000554258 CSRNP3Q8WYN3 585 aa28.44■■■□□ 2.14
NEK9-204ENST00000554258 ATP1B4Q9UN42 357 aaPredicted RBP28.43■■■□□ 2.14
NEK9-204ENST00000554258 CDK11AQ9UQ88 783 aaPredicted RBP28.43■■■□□ 2.14
NEK9-204ENST00000554258 CLTCQ00610 1675 aaKnown RBP28.42■■■□□ 2.14
NEK9-204ENST00000554258 CDC42BPBQ9Y5S2 1711 aa28.42■■■□□ 2.14
NEK9-204ENST00000554258 PTPRKQ15262 1439 aa28.42■■■□□ 2.14
NEK9-204ENST00000554258 ITSN2Q9NZM3 1697 aa28.4■■■□□ 2.14
NEK9-204ENST00000554258 SHANK2Q9UPX8 1470 aa28.4■■■□□ 2.14
NEK9-204ENST00000554258 SENP3Q9H4L4 574 aaPredicted RBP28.39■■■□□ 2.14
NEK9-204ENST00000554258 ABCC1P33527 1531 aa28.38■■■□□ 2.13
NEK9-204ENST00000554258 POLR1AO95602 1720 aaPredicted RBP28.38■■■□□ 2.13
NEK9-204ENST00000554258 ALKQ9UM73 1620 aa28.35■■■□□ 2.13
NEK9-204ENST00000554258 TROQ12816 1431 aaPredicted RBP28.35■■■□□ 2.13
NEK9-204ENST00000554258 RGS17Q9UGC6 210 aaPredicted RBP28.34■■■□□ 2.13
NEK9-204ENST00000554258 CLIP1P30622 1438 aa28.34■■■□□ 2.13
NEK9-204ENST00000554258 DNMT1P26358 1616 aaKnown RBP28.31■■■□□ 2.12
NEK9-204ENST00000554258 PREX2Q70Z35 1606 aa28.31■■■□□ 2.12
NEK9-204ENST00000554258 A2ML1A8K2U0 1454 aa28.29■■■□□ 2.12
NEK9-204ENST00000554258 NEURL4Q96JN8 1562 aa28.28■■■□□ 2.12
NEK9-204ENST00000554258 VWDEQ8N2E2 1590 aa28.24■■■□□ 2.11
NEK9-204ENST00000554258 FMN1Q68DA7 1419 aa28.23■■■□□ 2.11
NEK9-204ENST00000554258 SAMD9LQ8IVG5 1584 aa28.23■■■□□ 2.11
NEK9-204ENST00000554258 GGT6Q6P531 493 aa28.18■■■□□ 2.1
NEK9-204ENST00000554258 SPAG9O60271 1321 aaKnown RBP28.18■■■□□ 2.1
NEK9-204ENST00000554258 PLXNC1O60486 1568 aa28.16■■■□□ 2.1
NEK9-204ENST00000554258 RNF17Q9BXT8 1623 aaKnown RBP28.15■■■□□ 2.1
NEK9-204ENST00000554258 POTEAQ6S8J7 498 aa28.14■■■□□ 2.1
NEK9-204ENST00000554258 LRRIQ1Q96JM4 1722 aa28.14■■■□□ 2.1
NEK9-204ENST00000554258 CDC42BPAQ5VT25 1732 aa28.13■■■□□ 2.09
NEK9-204ENST00000554258 ANKLE2Q86XL3 938 aa28.13■■■□□ 2.09
NEK9-204ENST00000554258 A2MP01023 1474 aa28.12■■■□□ 2.09
NEK9-204ENST00000554258 ATP7AQ04656 1500 aa28.12■■■□□ 2.09
NEK9-204ENST00000554258 SETD1AO15047 1707 aaKnown RBP28.09■■■□□ 2.09
NEK9-204ENST00000554258 SYCP2Q9BX26 1530 aa28.09■■■□□ 2.09
NEK9-204ENST00000554258 ZNF777Q9ULD5 760 aaPredicted RBP28.08■■■□□ 2.09
NEK9-204ENST00000554258 STRCP1A6NGW2 1772 aa28.08■■■□□ 2.09
NEK9-204ENST00000554258 NPHP4O75161 1426 aaPredicted RBP28.08■■■□□ 2.09
NEK9-204ENST00000554258 LRRC7Q96NW7 1537 aa28.08■■■□□ 2.08
NEK9-204ENST00000554258 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.07■■■□□ 2.08
NEK9-204ENST00000554258 EEA1Q15075 1411 aa28.07■■■□□ 2.08
NEK9-204ENST00000554258 TNRQ92752 1358 aa28.06■■■□□ 2.08
NEK9-204ENST00000554258 SYNMO15061 1565 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms