RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ARHGEF12Q9NZN5 1544 aa23.38■■□□□ 1.33
SHMT2-208ENST00000553868 HECW1Q76N89 1606 aa23.36■■□□□ 1.33
SHMT2-208ENST00000553868 RAPGEF6Q8TEU7 1601 aa23.36■■□□□ 1.33
SHMT2-208ENST00000553868 PTPRTO14522 1441 aa23.33■■□□□ 1.33
SHMT2-208ENST00000553868 UHRF1BP1Q6BDS2 1440 aa23.33■■□□□ 1.33
SHMT2-208ENST00000553868 CFAP74Q9C0B2 1584 aa23.31■■□□□ 1.32
SHMT2-208ENST00000553868 MAGI2Q86UL8 1455 aa23.3■■□□□ 1.32
SHMT2-208ENST00000553868 NUP153P49790 1475 aaKnown RBP23.3■■□□□ 1.32
SHMT2-208ENST00000553868 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.28■■□□□ 1.32
SHMT2-208ENST00000553868 LOC105371045A0A1W2PR82 267 aa23.28■■□□□ 1.32
SHMT2-208ENST00000553868 IQSEC2Q5JU85 1478 aa23.27■■□□□ 1.32
SHMT2-208ENST00000553868 ATP10AO60312 1499 aa23.25■■□□□ 1.31
SHMT2-208ENST00000553868 PRXQ9BXM0 1461 aa23.24■■□□□ 1.31
SHMT2-208ENST00000553868 SETD1BQ9UPS6 1966 aaKnown RBP23.24■■□□□ 1.31
SHMT2-208ENST00000553868 C9orf84Q5VXU9 1444 aa23.24■■□□□ 1.31
SHMT2-208ENST00000553868 SCAPERQ9BY12 1400 aa23.24■■□□□ 1.31
SHMT2-208ENST00000553868 PLEKHD1A6NEE1 506 aa23.23■■□□□ 1.31
SHMT2-208ENST00000553868 UBAP1LF5GYI3 381 aa23.23■■□□□ 1.31
SHMT2-208ENST00000553868 SAMD9Q5K651 1589 aa23.22■■□□□ 1.31
SHMT2-208ENST00000553868 C3P01024 1663 aa23.16■■□□□ 1.3
SHMT2-208ENST00000553868 EHMT2Q96KQ7 1210 aa23.16■■□□□ 1.3
SHMT2-208ENST00000553868 NCOA1Q15788 1441 aa23.16■■□□□ 1.3
SHMT2-208ENST00000553868 MED1Q15648 1581 aaPredicted RBP23.14■■□□□ 1.3
SHMT2-208ENST00000553868 ZNF335Q9H4Z2 1342 aaPredicted RBP23.14■■□□□ 1.3
SHMT2-208ENST00000553868 UBTFP17480 764 aaKnown RBP23.14■■□□□ 1.29
SHMT2-208ENST00000553868 RANGAP1P46060 587 aaPredicted RBP23.14■■□□□ 1.29
SHMT2-208ENST00000553868 PLCH2O75038 1416 aa23.08■■□□□ 1.29
SHMT2-208ENST00000553868 NCKAP5LQ9HCH0 1330 aa23.08■■□□□ 1.28
SHMT2-208ENST00000553868 HSPA1LP34931 641 aa23.07■■□□□ 1.28
SHMT2-208ENST00000553868 CAMSAP1Q5T5Y3 1602 aa23.07■■□□□ 1.28
SHMT2-208ENST00000553868 TRAPPC8Q9Y2L5 1435 aa23.06■■□□□ 1.28
SHMT2-208ENST00000553868 AFAP1Q8N556 730 aa23.04■■□□□ 1.28
SHMT2-208ENST00000553868 MYT1LQ9UL68 1186 aa23.03■■□□□ 1.28
SHMT2-208ENST00000553868 SCAF1Q9H7N4 1312 aaKnown RBP23.03■■□□□ 1.28
SHMT2-208ENST00000553868 CDK13Q14004 1512 aaKnown RBP23.03■■□□□ 1.28
SHMT2-208ENST00000553868 DIP2CQ9Y2E4 1556 aa23.01■■□□□ 1.27
SHMT2-208ENST00000553868 PIP4K2BP78356 416 aa23■■□□□ 1.27
SHMT2-208ENST00000553868 EFCAB2Q5VUJ9 269 aa22.99■■□□□ 1.27
SHMT2-208ENST00000553868 ESF1Q9H501 851 aaKnown RBP22.99■■□□□ 1.27
SHMT2-208ENST00000553868 ZNF518AQ6AHZ1 1483 aa22.98■■□□□ 1.27
SHMT2-208ENST00000553868 KDM5CP41229 1560 aa22.97■■□□□ 1.27
SHMT2-208ENST00000553868 ABCA6Q8N139 1617 aa22.97■■□□□ 1.27
SHMT2-208ENST00000553868 PHF23Q9BUL5 403 aaPredicted RBP22.96■■□□□ 1.27
SHMT2-208ENST00000553868 MYO5CQ9NQX4 1742 aa22.96■■□□□ 1.27
SHMT2-208ENST00000553868 CEP162Q5TB80 1403 aa22.94■■□□□ 1.26
SHMT2-208ENST00000553868 REREQ9P2R6 1566 aa22.93■■□□□ 1.26
SHMT2-208ENST00000553868 AGLP35573 1532 aa22.89■■□□□ 1.26
SHMT2-208ENST00000553868 KIF14Q15058 1648 aa22.88■■□□□ 1.25
SHMT2-208ENST00000553868 ARHGAP5Q13017 1502 aa22.87■■□□□ 1.25
SHMT2-208ENST00000553868 CLIP1P30622 1438 aa22.85■■□□□ 1.25
SHMT2-208ENST00000553868 CNTLNQ9NXG0 1405 aa22.85■■□□□ 1.25
SHMT2-208ENST00000553868 NPATQ14207 1427 aa22.84■■□□□ 1.25
SHMT2-208ENST00000553868 PKD2Q13563 968 aa22.84■■□□□ 1.25
SHMT2-208ENST00000553868 MLH3Q9UHC1 1453 aa22.84■■□□□ 1.25
SHMT2-208ENST00000553868 SUPT6HQ7KZ85 1726 aaKnown RBP22.83■■□□□ 1.25
SHMT2-208ENST00000553868 SENP3Q9H4L4 574 aaPredicted RBP22.83■■□□□ 1.25
SHMT2-208ENST00000553868 PPP6R1Q9UPN7 881 aa22.83■■□□□ 1.25
SHMT2-208ENST00000553868 TCOF1Q13428 1488 aaKnown RBP22.83■■□□□ 1.25
SHMT2-208ENST00000553868 ZMYM3Q14202 1370 aa22.82■■□□□ 1.24
SHMT2-208ENST00000553868 TOM1O60784 492 aa22.82■■□□□ 1.24
SHMT2-208ENST00000553868 PLA2R1Q13018 1463 aa22.81■■□□□ 1.24
SHMT2-208ENST00000553868 ATP1B4Q9UN42 357 aaPredicted RBP22.81■■□□□ 1.24
SHMT2-208ENST00000553868 MYO3AQ8NEV4 1616 aa22.81■■□□□ 1.24
SHMT2-208ENST00000553868 MROH2AA6NES4 1674 aa22.79■■□□□ 1.24
SHMT2-208ENST00000553868 ZNF142P52746 1687 aaPredicted RBP22.78■■□□□ 1.24
SHMT2-208ENST00000553868 CEP170BQ9Y4F5 1589 aaPredicted RBP22.78■■□□□ 1.24
SHMT2-208ENST00000553868 KIDINS220Q9ULH0 1771 aa22.76■■□□□ 1.23
SHMT2-208ENST00000553868 CDC42BPBQ9Y5S2 1711 aa22.74■■□□□ 1.23
SHMT2-208ENST00000553868 RGS17Q9UGC6 210 aaPredicted RBP22.74■■□□□ 1.23
SHMT2-208ENST00000553868 ALKQ9UM73 1620 aa22.74■■□□□ 1.23
SHMT2-208ENST00000553868 CLTCQ00610 1675 aaKnown RBP22.73■■□□□ 1.23
SHMT2-208ENST00000553868 ABCC1P33527 1531 aa22.71■■□□□ 1.23
SHMT2-208ENST00000553868 PTPRKQ15262 1439 aa22.7■■□□□ 1.22
SHMT2-208ENST00000553868 CPS1P31327 1500 aa22.7■■□□□ 1.22
SHMT2-208ENST00000553868 ITSN2Q9NZM3 1697 aa22.7■■□□□ 1.22
SHMT2-208ENST00000553868 SHANK2Q9UPX8 1470 aa22.69■■□□□ 1.22
SHMT2-208ENST00000553868 TROQ12816 1431 aaPredicted RBP22.68■■□□□ 1.22
SHMT2-208ENST00000553868 CDK11AQ9UQ88 783 aaPredicted RBP22.67■■□□□ 1.22
SHMT2-208ENST00000553868 ARHGAP35Q9NRY4 1499 aa22.66■■□□□ 1.22
SHMT2-208ENST00000553868 NEURL4Q96JN8 1562 aa22.64■■□□□ 1.22
SHMT2-208ENST00000553868 DNMT1P26358 1616 aaKnown RBP22.63■■□□□ 1.21
SHMT2-208ENST00000553868 PREX2Q70Z35 1606 aa22.62■■□□□ 1.21
SHMT2-208ENST00000553868 VPS8Q8N3P4 1428 aa22.62■■□□□ 1.21
SHMT2-208ENST00000553868 POLR1AO95602 1720 aaPredicted RBP22.61■■□□□ 1.21
SHMT2-208ENST00000553868 A2ML1A8K2U0 1454 aa22.6■■□□□ 1.21
SHMT2-208ENST00000553868 SAMD9LQ8IVG5 1584 aa22.59■■□□□ 1.21
SHMT2-208ENST00000553868 VWDEQ8N2E2 1590 aa22.59■■□□□ 1.21
SHMT2-208ENST00000553868 GGT6Q6P531 493 aa22.59■■□□□ 1.21
SHMT2-208ENST00000553868 LRRIQ1Q96JM4 1722 aa22.59■■□□□ 1.21
SHMT2-208ENST00000553868 POTEAQ6S8J7 498 aa22.56■■□□□ 1.2
SHMT2-208ENST00000553868 FMN1Q68DA7 1419 aa22.54■■□□□ 1.2
SHMT2-208ENST00000553868 ZNF777Q9ULD5 760 aaPredicted RBP22.53■■□□□ 1.2
SHMT2-208ENST00000553868 SPAG9O60271 1321 aaKnown RBP22.53■■□□□ 1.2
SHMT2-208ENST00000553868 PLXNC1O60486 1568 aa22.51■■□□□ 1.19
SHMT2-208ENST00000553868 CDC42BPAQ5VT25 1732 aa22.51■■□□□ 1.19
SHMT2-208ENST00000553868 HNRNPMP52272 730 aaKnown RBP eCLIP22.5■■□□□ 1.19
SHMT2-208ENST00000553868 SYCP2Q9BX26 1530 aa22.5■■□□□ 1.19
SHMT2-208ENST00000553868 STRCP1A6NGW2 1772 aa22.5■■□□□ 1.19
SHMT2-208ENST00000553868 A2MP01023 1474 aa22.49■■□□□ 1.19
SHMT2-208ENST00000553868 SETD1AO15047 1707 aaKnown RBP22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms