RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 NAIPQ13075 1403 aa18.56■□□□□ 0.56
SHMT2-205ENST00000553474 MYT1Q01538 1121 aa18.55■□□□□ 0.56
SHMT2-205ENST00000553474 PTPRKQ15262 1439 aa18.54■□□□□ 0.56
SHMT2-205ENST00000553474 KDM5BQ9UGL1 1544 aa18.51■□□□□ 0.55
SHMT2-205ENST00000553474 ATP10BO94823 1461 aa18.49■□□□□ 0.55
SHMT2-205ENST00000553474 NPM1P06748 294 aaKnown RBP eCLIP18.49■□□□□ 0.55
SHMT2-205ENST00000553474 PPP1R15AO75807 674 aaPredicted RBP18.48■□□□□ 0.55
SHMT2-205ENST00000553474 YTHDC1Q96MU7 727 aaKnown RBP18.48■□□□□ 0.55
SHMT2-205ENST00000553474 SIN3AQ96ST3 1273 aa18.47■□□□□ 0.55
SHMT2-205ENST00000553474 TONSLQ96HA7 1378 aa18.45■□□□□ 0.54
SHMT2-205ENST00000553474 CDK11AQ9UQ88 783 aaPredicted RBP18.44■□□□□ 0.54
SHMT2-205ENST00000553474 ROCK1Q13464 1354 aa18.42■□□□□ 0.54
SHMT2-205ENST00000553474 ASXL2Q76L83 1435 aa18.41■□□□□ 0.54
SHMT2-205ENST00000553474 DNMT1P26358 1616 aaKnown RBP18.4■□□□□ 0.54
SHMT2-205ENST00000553474 WDR7Q9Y4E6 1490 aa18.39■□□□□ 0.53
SHMT2-205ENST00000553474 ITSN2Q9NZM3 1697 aa18.38■□□□□ 0.53
SHMT2-205ENST00000553474 KIF14Q15058 1648 aa18.37■□□□□ 0.53
SHMT2-205ENST00000553474 PLEKHD1A6NEE1 506 aa18.35■□□□□ 0.53
SHMT2-205ENST00000553474 DAPK1P53355 1430 aa18.34■□□□□ 0.53
SHMT2-205ENST00000553474 TROQ12816 1431 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-205ENST00000553474 KCNH8Q96L42 1107 aa18.34■□□□□ 0.53
SHMT2-205ENST00000553474 KIF13AQ9H1H9 1805 aa18.32■□□□□ 0.52
SHMT2-205ENST00000553474 DIP2BQ9P265 1576 aa18.32■□□□□ 0.52
SHMT2-205ENST00000553474 TTC37Q6PGP7 1564 aa18.3■□□□□ 0.52
SHMT2-205ENST00000553474 RRP7BPQ9NSQ0 103 aa18.29■□□□□ 0.52
SHMT2-205ENST00000553474 DENND4BO75064 1496 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-205ENST00000553474 ABCC5O15440 1437 aa18.28■□□□□ 0.52
SHMT2-205ENST00000553474 ADGBQ8N7X0 1667 aa18.28■□□□□ 0.52
SHMT2-205ENST00000553474 KDM6BO15054 1643 aa18.27■□□□□ 0.52
SHMT2-205ENST00000553474 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.27■□□□□ 0.52
SHMT2-205ENST00000553474 TSPOAP1O95153 1857 aa18.27■□□□□ 0.51
SHMT2-205ENST00000553474 ABCC10Q5T3U5 1492 aa18.26■□□□□ 0.51
SHMT2-205ENST00000553474 CCER2I3L3R5 266 aa18.26■□□□□ 0.51
SHMT2-205ENST00000553474 MYO5CQ9NQX4 1742 aa18.26■□□□□ 0.51
SHMT2-205ENST00000553474 ABCA9Q8IUA7 1624 aa18.25■□□□□ 0.51
SHMT2-205ENST00000553474 CHIC2Q9UKJ5 165 aa18.25■□□□□ 0.51
SHMT2-205ENST00000553474 DDX10Q13206 875 aaKnown RBP18.25■□□□□ 0.51
SHMT2-205ENST00000553474 MPHOSPH9Q99550 1183 aa18.25■□□□□ 0.51
SHMT2-205ENST00000553474 CROCC2H7BZ55 1655 aa18.24■□□□□ 0.51
SHMT2-205ENST00000553474 CDC42BPAQ5VT25 1732 aa18.24■□□□□ 0.51
SHMT2-205ENST00000553474 ADGRL2O95490 1459 aa18.24■□□□□ 0.51
SHMT2-205ENST00000553474 TRIM52Q96A61 297 aa18.23■□□□□ 0.51
SHMT2-205ENST00000553474 CAMSAP2Q08AD1 1489 aa18.23■□□□□ 0.51
SHMT2-205ENST00000553474 TRHP20396 242 aaPredicted RBP18.22■□□□□ 0.51
SHMT2-205ENST00000553474 FAM69CQ0P6D2 419 aa18.22■□□□□ 0.51
SHMT2-205ENST00000553474 MAP3K4Q9Y6R4 1608 aa18.22■□□□□ 0.51
SHMT2-205ENST00000553474 GPATCH8Q9UKJ3 1502 aaKnown RBP18.22■□□□□ 0.51
SHMT2-205ENST00000553474 GLI2P10070 1586 aa18.22■□□□□ 0.51
SHMT2-205ENST00000553474 RPRD2Q5VT52 1461 aaKnown RBP18.2■□□□□ 0.5
SHMT2-205ENST00000553474 PREX2Q70Z35 1606 aa18.2■□□□□ 0.5
SHMT2-205ENST00000553474 ANP32CO43423 234 aa18.19■□□□□ 0.5
SHMT2-205ENST00000553474 CDC42BPBQ9Y5S2 1711 aa18.18■□□□□ 0.5
SHMT2-205ENST00000553474 CFDP1Q9UEE9 299 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-205ENST00000553474 ANKRD30BQ9BXX2 1392 aa18.18■□□□□ 0.5
SHMT2-205ENST00000553474 NCOA1Q15788 1441 aa18.17■□□□□ 0.5
SHMT2-205ENST00000553474 SHANK2Q9UPX8 1470 aa18.17■□□□□ 0.5
SHMT2-205ENST00000553474 CD109Q6YHK3 1445 aa18.16■□□□□ 0.5
SHMT2-205ENST00000553474 ARHGAP5Q13017 1502 aa18.15■□□□□ 0.5
SHMT2-205ENST00000553474 PPRC1Q5VV67 1664 aaKnown RBP18.15■□□□□ 0.5
SHMT2-205ENST00000553474 ANKRD30AQ9BXX3 1397 aa18.13■□□□□ 0.49
SHMT2-205ENST00000553474 ZNF644Q9H582 1327 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-205ENST00000553474 TEX14Q8IWB6 1497 aa18.11■□□□□ 0.49
SHMT2-205ENST00000553474 EIF4G2P78344 907 aaKnown RBP eCLIP18.11■□□□□ 0.49
SHMT2-205ENST00000553474 CFAP74Q9C0B2 1584 aa18.1■□□□□ 0.49
SHMT2-205ENST00000553474 PLCH2O75038 1416 aa18.1■□□□□ 0.49
SHMT2-205ENST00000553474 PZPP20742 1482 aa18.09■□□□□ 0.49
SHMT2-205ENST00000553474 POLR1AO95602 1720 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-205ENST00000553474 FANCAO15360 1455 aa18.09■□□□□ 0.49
SHMT2-205ENST00000553474 SLC4A1APQ9BWU0 796 aaKnown RBP18.09■□□□□ 0.49
SHMT2-205ENST00000553474 ZNF777Q9ULD5 760 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-205ENST00000553474 ARHGEF5Q12774 1597 aa18.08■□□□□ 0.49
SHMT2-205ENST00000553474 ARAP3Q8WWN8 1544 aa18.08■□□□□ 0.48
SHMT2-205ENST00000553474 SAMD9LQ8IVG5 1584 aa18.07■□□□□ 0.48
SHMT2-205ENST00000553474 L3MBTL2Q969R5 705 aa18.07■□□□□ 0.48
SHMT2-205ENST00000553474 HIRIP3Q9BW71 556 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-205ENST00000553474 KIAA1107Q9UPP5 1409 aa18.06■□□□□ 0.48
SHMT2-205ENST00000553474 KDM5DQ9BY66 1539 aa18.05■□□□□ 0.48
SHMT2-205ENST00000553474 HSPA5P11021 654 aaKnown RBP18.05■□□□□ 0.48
SHMT2-205ENST00000553474 SUPT16HQ9Y5B9 1047 aaKnown RBP18.04■□□□□ 0.48
SHMT2-205ENST00000553474 ANKRD50Q9ULJ7 1429 aa18.04■□□□□ 0.48
SHMT2-205ENST00000553474 SYCP2Q9BX26 1530 aa18.02■□□□□ 0.48
SHMT2-205ENST00000553474 RSPH4AQ5TD94 716 aa18.02■□□□□ 0.48
SHMT2-205ENST00000553474 EFCAB2Q5VUJ9 269 aa18.02■□□□□ 0.48
SHMT2-205ENST00000553474 C9orf84Q5VXU9 1444 aa18.02■□□□□ 0.48
SHMT2-205ENST00000553474 WASHC2AQ641Q2 1341 aa18.01■□□□□ 0.47
SHMT2-205ENST00000553474 ADGRL1O94910 1474 aa18.01■□□□□ 0.47
SHMT2-205ENST00000553474 ABCC1P33527 1531 aa18.01■□□□□ 0.47
SHMT2-205ENST00000553474 NEO1Q92859 1461 aa18.01■□□□□ 0.47
SHMT2-205ENST00000553474 CNTLNQ9NXG0 1405 aa18■□□□□ 0.47
SHMT2-205ENST00000553474 MBD5Q9P267 1494 aa18■□□□□ 0.47
SHMT2-205ENST00000553474 SPATA31E1Q6ZUB1 1445 aa17.99■□□□□ 0.47
SHMT2-205ENST00000553474 TSPY4P0CV99 314 aa17.98■□□□□ 0.47
SHMT2-205ENST00000553474 TSPY10P0CW01 314 aa17.98■□□□□ 0.47
SHMT2-205ENST00000553474 FOXD1Q16676 465 aa17.97■□□□□ 0.47
SHMT2-205ENST00000553474 ARHGEF12Q9NZN5 1544 aa17.97■□□□□ 0.47
SHMT2-205ENST00000553474 CCDC7Q96M83 1385 aa17.96■□□□□ 0.47
SHMT2-205ENST00000553474 CCDC141Q6ZP82 1450 aa17.96■□□□□ 0.47
SHMT2-205ENST00000553474 PLEKHH2Q8IVE3 1493 aa17.96■□□□□ 0.47
SHMT2-205ENST00000553474 SCAPERQ9BY12 1400 aa17.95■□□□□ 0.46
SHMT2-205ENST00000553474 MAST1Q9Y2H9 1570 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms