RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 MAGI2Q86UL8 1455 aa32.1■■■□□ 2.73
CHD4-213ENST00000545584 ARHGAP5Q13017 1502 aa32.1■■■□□ 2.73
CHD4-213ENST00000545584 POGZQ7Z3K3 1410 aa32.09■■■□□ 2.73
CHD4-213ENST00000545584 ZFYVE16Q7Z3T8 1539 aa32.09■■■□□ 2.73
CHD4-213ENST00000545584 ADAMTSL3P82987 1691 aa32.08■■■□□ 2.73
CHD4-213ENST00000545584 BCORL1Q5H9F3 1711 aa32.06■■■□□ 2.72
CHD4-213ENST00000545584 YEATS2Q9ULM3 1422 aa32.04■■■□□ 2.72
CHD4-213ENST00000545584 HECW2Q9P2P5 1572 aa32.02■■■□□ 2.72
CHD4-213ENST00000545584 PTPRMP28827 1452 aa32.01■■■□□ 2.71
CHD4-213ENST00000545584 ZNF518AQ6AHZ1 1483 aa31.97■■■□□ 2.71
CHD4-213ENST00000545584 MADDQ8WXG6 1647 aa31.97■■■□□ 2.71
CHD4-213ENST00000545584 CDC42BPBQ9Y5S2 1711 aa31.96■■■□□ 2.71
CHD4-213ENST00000545584 PREX2Q70Z35 1606 aa31.95■■■□□ 2.71
CHD4-213ENST00000545584 MYT1LQ9UL68 1186 aa31.94■■■□□ 2.7
CHD4-213ENST00000545584 AFAP1Q8N556 730 aa31.93■■■□□ 2.7
CHD4-213ENST00000545584 ATP10AO60312 1499 aa31.92■■■□□ 2.7
CHD4-213ENST00000545584 CEP162Q5TB80 1403 aa31.92■■■□□ 2.7
CHD4-213ENST00000545584 C9orf84Q5VXU9 1444 aa31.89■■■□□ 2.7
CHD4-213ENST00000545584 MLECQ14165 292 aa31.88■■■□□ 2.69
CHD4-213ENST00000545584 KDM5CP41229 1560 aa31.88■■■□□ 2.69
CHD4-213ENST00000545584 CDC42BPAQ5VT25 1732 aa31.86■■■□□ 2.69
CHD4-213ENST00000545584 RIMS1Q86UR5 1692 aaKnown RBP31.86■■■□□ 2.69
CHD4-213ENST00000545584 ABCC1P33527 1531 aa31.85■■■□□ 2.69
CHD4-213ENST00000545584 MTUS2Q5JR59 1369 aa31.85■■■□□ 2.69
CHD4-213ENST00000545584 SIGLEC1Q9BZZ2 1709 aa31.84■■■□□ 2.69
CHD4-213ENST00000545584 ZNF777Q9ULD5 760 aaPredicted RBP31.83■■■□□ 2.69
CHD4-213ENST00000545584 TRAPPC8Q9Y2L5 1435 aa31.8■■■□□ 2.68
CHD4-213ENST00000545584 ARHGEF12Q9NZN5 1544 aa31.8■■■□□ 2.68
CHD4-213ENST00000545584 GPATCH8Q9UKJ3 1502 aaKnown RBP31.8■■■□□ 2.68
CHD4-213ENST00000545584 ITSN2Q9NZM3 1697 aa31.8■■■□□ 2.68
CHD4-213ENST00000545584 MLH3Q9UHC1 1453 aa31.79■■■□□ 2.68
CHD4-213ENST00000545584 CCNB3Q8WWL7 1395 aa31.78■■■□□ 2.68
CHD4-213ENST00000545584 PLPPR3Q6T4P5 718 aa31.77■■■□□ 2.68
CHD4-213ENST00000545584 CFDP1Q9UEE9 299 aaPredicted RBP31.76■■■□□ 2.67
CHD4-213ENST00000545584 FER1L4A9Z1Z3 1794 aa31.74■■■□□ 2.67
CHD4-213ENST00000545584 DIP2CQ9Y2E4 1556 aa31.74■■■□□ 2.67
CHD4-213ENST00000545584 LOC105371045A0A1W2PR82 267 aa31.73■■■□□ 2.67
CHD4-213ENST00000545584 SAMD9LQ8IVG5 1584 aa31.72■■■□□ 2.67
CHD4-213ENST00000545584 EHBP1L1Q8N3D4 1523 aa31.71■■■□□ 2.67
CHD4-213ENST00000545584 PLEKHH2Q8IVE3 1493 aa31.7■■■□□ 2.66
CHD4-213ENST00000545584 REREQ9P2R6 1566 aa31.69■■■□□ 2.66
CHD4-213ENST00000545584 ABCA6Q8N139 1617 aa31.69■■■□□ 2.66
CHD4-213ENST00000545584 SYCP2Q9BX26 1530 aa31.68■■■□□ 2.66
CHD4-213ENST00000545584 HNRNPMP52272 730 aaKnown RBP eCLIP31.67■■■□□ 2.663e-7■■■■■ 27.3
CHD4-213ENST00000545584 KIAA1107Q9UPP5 1409 aa31.66■■■□□ 2.66
CHD4-213ENST00000545584 SPAG9O60271 1321 aaKnown RBP31.64■■■□□ 2.66
CHD4-213ENST00000545584 LMTK3Q96Q04 1460 aa31.64■■■□□ 2.66
CHD4-213ENST00000545584 KIDINS220Q9ULH0 1771 aa31.63■■■□□ 2.65
CHD4-213ENST00000545584 AGLP35573 1532 aa31.61■■■□□ 2.65
CHD4-213ENST00000545584 TIAM1Q13009 1591 aa31.6■■■□□ 2.65
CHD4-213ENST00000545584 ESF1Q9H501 851 aaKnown RBP31.59■■■□□ 2.65
CHD4-213ENST00000545584 VPS8Q8N3P4 1428 aa31.58■■■□□ 2.65
CHD4-213ENST00000545584 CEBPAP49715 358 aaPredicted RBP31.54■■■□□ 2.64
CHD4-213ENST00000545584 SUPT6HQ7KZ85 1726 aaKnown RBP31.53■■■□□ 2.64
CHD4-213ENST00000545584 ATP7AQ04656 1500 aa31.53■■■□□ 2.64
CHD4-213ENST00000545584 ZNF644Q9H582 1327 aaPredicted RBP31.51■■■□□ 2.64
CHD4-213ENST00000545584 HSPA2P54652 639 aa31.51■■■□□ 2.63
CHD4-213ENST00000545584 NCOA2Q15596 1464 aa31.51■■■□□ 2.63
CHD4-213ENST00000545584 ILDR1Q86SU0 546 aaPredicted RBP31.48■■■□□ 2.63
CHD4-213ENST00000545584 INO80Q9ULG1 1556 aaPredicted RBP31.47■■■□□ 2.63
CHD4-213ENST00000545584 CNTLNQ9NXG0 1405 aa31.44■■■□□ 2.62
CHD4-213ENST00000545584 A2MP01023 1474 aa31.44■■■□□ 2.62
CHD4-213ENST00000545584 MBD5Q9P267 1494 aa31.44■■■□□ 2.62
CHD4-213ENST00000545584 PREX1Q8TCU6 1659 aa31.43■■■□□ 2.62
CHD4-213ENST00000545584 LRRC9Q6ZRR7 1453 aa31.42■■■□□ 2.62
CHD4-213ENST00000545584 SETD1BQ9UPS6 1966 aaKnown RBP31.4■■■□□ 2.62
CHD4-213ENST00000545584 C3P01024 1663 aa31.39■■■□□ 2.62
CHD4-213ENST00000545584 RSPH4AQ5TD94 716 aa31.39■■■□□ 2.62
CHD4-213ENST00000545584 UHRF1BP1Q6BDS2 1440 aa31.39■■■□□ 2.62
CHD4-213ENST00000545584 RTEL1-TNFRSF6BF6WH68 1400 aa31.38■■■□□ 2.61
CHD4-213ENST00000545584 CAMSAP2Q08AD1 1489 aa31.38■■■□□ 2.61
CHD4-213ENST00000545584 MAP3K1Q13233 1512 aa31.38■■■□□ 2.61
CHD4-213ENST00000545584 PLXNC1O60486 1568 aa31.37■■■□□ 2.61
CHD4-213ENST00000545584 ADGBQ8N7X0 1667 aa31.36■■■□□ 2.61
CHD4-213ENST00000545584 CCDC141Q6ZP82 1450 aa31.35■■■□□ 2.61
CHD4-213ENST00000545584 APLP2Q06481 763 aa31.32■■■□□ 2.6
CHD4-213ENST00000545584 GGT6Q6P531 493 aa31.32■■■□□ 2.6
CHD4-213ENST00000545584 KANK4Q5T7N3 995 aaPredicted RBP31.31■■■□□ 2.6
CHD4-213ENST00000545584 MROH2AA6NES4 1674 aa31.29■■■□□ 2.6
CHD4-213ENST00000545584 ZMYM3Q14202 1370 aa31.29■■■□□ 2.6
CHD4-213ENST00000545584 TSPY4P0CV99 314 aa31.28■■■□□ 2.6
CHD4-213ENST00000545584 TSPY10P0CW01 314 aa31.28■■■□□ 2.6
CHD4-213ENST00000545584 PPP6R1Q9UPN7 881 aa31.28■■■□□ 2.6
CHD4-213ENST00000545584 DHX29Q7Z478 1369 aaKnown RBP31.27■■■□□ 2.6
CHD4-213ENST00000545584 ARHGEF5Q12774 1597 aa31.25■■■□□ 2.59
CHD4-213ENST00000545584 NPATQ14207 1427 aa31.24■■■□□ 2.59
CHD4-213ENST00000545584 CLTCQ00610 1675 aaKnown RBP31.23■■■□□ 2.59
CHD4-213ENST00000545584 DMRT2Q9Y5R5 561 aa31.22■■■□□ 2.59
CHD4-213ENST00000545584 FBXO41Q8TF61 875 aa31.2■■■□□ 2.59
CHD4-213ENST00000545584 MYOM3Q5VTT5 1437 aa31.2■■■□□ 2.59
CHD4-213ENST00000545584 MIA2Q96PC5 1412 aa31.2■■■□□ 2.59
CHD4-213ENST00000545584 KIF3BO15066 747 aa31.19■■■□□ 2.58
CHD4-213ENST00000545584 STRCQ7RTU9 1775 aa31.12■■■□□ 2.57
CHD4-213ENST00000545584 PTPRKQ15262 1439 aa31.11■■■□□ 2.57
CHD4-213ENST00000545584 MAST1Q9Y2H9 1570 aa31.09■■■□□ 2.57
CHD4-213ENST00000545584 FAM135AQ9P2D6 1515 aa31.06■■■□□ 2.56
CHD4-213ENST00000545584 WASHC2CQ9Y4E1 1318 aa31.05■■■□□ 2.56
CHD4-213ENST00000545584 CERKQ8TCT0 537 aa31.05■■■□□ 2.56
CHD4-213ENST00000545584 PTPRTO14522 1441 aa31.04■■■□□ 2.56
CHD4-213ENST00000545584 KDM5DQ9BY66 1539 aa31.03■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms