RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 UBTFP17480 764 aaKnown RBP20.33■□□□□ 0.85
SNHG1-216ENST00000541416 EFCAB2Q5VUJ9 269 aa20.33■□□□□ 0.85
SNHG1-216ENST00000541416 HECW1Q76N89 1606 aa20.33■□□□□ 0.84
SNHG1-216ENST00000541416 MLECQ14165 292 aa20.31■□□□□ 0.84
SNHG1-216ENST00000541416 FER1L4A9Z1Z3 1794 aa20.31■□□□□ 0.84
SNHG1-216ENST00000541416 HSPA2P54652 639 aa20.3■□□□□ 0.84
SNHG1-216ENST00000541416 MYO5CQ9NQX4 1742 aa20.3■□□□□ 0.84
SNHG1-216ENST00000541416 ATP10AO60312 1499 aa20.29■□□□□ 0.84
SNHG1-216ENST00000541416 C9orf84Q5VXU9 1444 aa20.27■□□□□ 0.84
SNHG1-216ENST00000541416 KIF14Q15058 1648 aa20.26■□□□□ 0.83
SNHG1-216ENST00000541416 CLIP1P30622 1438 aa20.26■□□□□ 0.83
SNHG1-216ENST00000541416 SIGLEC1Q9BZZ2 1709 aa20.25■□□□□ 0.83
SNHG1-216ENST00000541416 ZNF518AQ6AHZ1 1483 aa20.24■□□□□ 0.83
SNHG1-216ENST00000541416 ARHGEF12Q9NZN5 1544 aa20.22■□□□□ 0.83
SNHG1-216ENST00000541416 MYT1LQ9UL68 1186 aa20.22■□□□□ 0.83
SNHG1-216ENST00000541416 ARHGAP5Q13017 1502 aa20.22■□□□□ 0.83
SNHG1-216ENST00000541416 TROQ12816 1431 aaPredicted RBP20.21■□□□□ 0.83
SNHG1-216ENST00000541416 EHMT2Q96KQ7 1210 aa20.21■□□□□ 0.83
SNHG1-216ENST00000541416 ARHGAP35Q9NRY4 1499 aa20.21■□□□□ 0.83
SNHG1-216ENST00000541416 PREX1Q8TCU6 1659 aa20.2■□□□□ 0.82
SNHG1-216ENST00000541416 CERKQ8TCT0 537 aa20.2■□□□□ 0.82
SNHG1-216ENST00000541416 DMRT2Q9Y5R5 561 aa20.18■□□□□ 0.82
SNHG1-216ENST00000541416 KDM5CP41229 1560 aa20.16■□□□□ 0.82
SNHG1-216ENST00000541416 AFAP1Q8N556 730 aa20.15■□□□□ 0.82
SNHG1-216ENST00000541416 ESF1Q9H501 851 aaKnown RBP20.15■□□□□ 0.82
SNHG1-216ENST00000541416 UHRF1BP1Q6BDS2 1440 aa20.13■□□□□ 0.81
SNHG1-216ENST00000541416 SETD1BQ9UPS6 1966 aaKnown RBP20.12■□□□□ 0.81
SNHG1-216ENST00000541416 CEBPAP49715 358 aaPredicted RBP20.12■□□□□ 0.81
SNHG1-216ENST00000541416 REREQ9P2R6 1566 aa20.12■□□□□ 0.81
SNHG1-216ENST00000541416 CCDC18Q5T9S5 1454 aa20.11■□□□□ 0.81
SNHG1-216ENST00000541416 MLH3Q9UHC1 1453 aa20.11■□□□□ 0.81
SNHG1-216ENST00000541416 DIP2CQ9Y2E4 1556 aa20.09■□□□□ 0.81
SNHG1-216ENST00000541416 CDC42BPBQ9Y5S2 1711 aa20.08■□□□□ 0.81
SNHG1-216ENST00000541416 PREX2Q70Z35 1606 aa20.07■□□□□ 0.8
SNHG1-216ENST00000541416 LRRIQ1Q96JM4 1722 aa20.05■□□□□ 0.8
SNHG1-216ENST00000541416 CASKIN1Q8WXD9 1431 aa20.05■□□□□ 0.8
SNHG1-216ENST00000541416 ABCC1P33527 1531 aa20.05■□□□□ 0.8
SNHG1-216ENST00000541416 AGLP35573 1532 aa20.05■□□□□ 0.8
SNHG1-216ENST00000541416 ABCA6Q8N139 1617 aa20.05■□□□□ 0.8
SNHG1-216ENST00000541416 CHIC1Q5VXU3 224 aa20.03■□□□□ 0.8
SNHG1-216ENST00000541416 STRCQ7RTU9 1775 aa20.03■□□□□ 0.8
SNHG1-216ENST00000541416 CNTLNQ9NXG0 1405 aa20.02■□□□□ 0.8
SNHG1-216ENST00000541416 C3P01024 1663 aa20.02■□□□□ 0.8
SNHG1-216ENST00000541416 ITSN2Q9NZM3 1697 aa20.02■□□□□ 0.8
SNHG1-216ENST00000541416 TRAPPC8Q9Y2L5 1435 aa20.02■□□□□ 0.79
SNHG1-216ENST00000541416 PTPRTO14522 1441 aa20■□□□□ 0.79
SNHG1-216ENST00000541416 FYCO1Q9BQS8 1478 aa19.98■□□□□ 0.79
SNHG1-216ENST00000541416 CDC42BPAQ5VT25 1732 aa19.97■□□□□ 0.79
SNHG1-216ENST00000541416 KIDINS220Q9ULH0 1771 aa19.96■□□□□ 0.79
SNHG1-216ENST00000541416 ZNF777Q9ULD5 760 aaPredicted RBP19.95■□□□□ 0.78
SNHG1-216ENST00000541416 SPAG9O60271 1321 aaKnown RBP19.93■□□□□ 0.78
SNHG1-216ENST00000541416 NPATQ14207 1427 aa19.93■□□□□ 0.78
SNHG1-216ENST00000541416 SAMD9LQ8IVG5 1584 aa19.92■□□□□ 0.78
SNHG1-216ENST00000541416 MROH2AA6NES4 1674 aa19.91■□□□□ 0.78
SNHG1-216ENST00000541416 DISP3Q9P2K9 1392 aa19.91■□□□□ 0.78
SNHG1-216ENST00000541416 PLEKHH2Q8IVE3 1493 aa19.91■□□□□ 0.78
SNHG1-216ENST00000541416 NCOA1Q15788 1441 aa19.89■□□□□ 0.77
SNHG1-216ENST00000541416 SYCP2Q9BX26 1530 aa19.89■□□□□ 0.77
SNHG1-216ENST00000541416 GPATCH8Q9UKJ3 1502 aaKnown RBP19.88■□□□□ 0.77
SNHG1-216ENST00000541416 IQSEC2Q5JU85 1478 aa19.88■□□□□ 0.77
SNHG1-216ENST00000541416 KIAA1107Q9UPP5 1409 aa19.88■□□□□ 0.77
SNHG1-216ENST00000541416 CFDP1Q9UEE9 299 aaPredicted RBP19.88■□□□□ 0.77
SNHG1-216ENST00000541416 ZMYM3Q14202 1370 aa19.87■□□□□ 0.77
SNHG1-216ENST00000541416 CCNB3Q8WWL7 1395 aa19.86■□□□□ 0.77
SNHG1-216ENST00000541416 HNRNPMP52272 730 aaKnown RBP eCLIP19.86■□□□□ 0.77
SNHG1-216ENST00000541416 ATP7AQ04656 1500 aa19.86■□□□□ 0.77
SNHG1-216ENST00000541416 SUPT6HQ7KZ85 1726 aaKnown RBP19.85■□□□□ 0.77
SNHG1-216ENST00000541416 CAMSAP1Q5T5Y3 1602 aa19.84■□□□□ 0.77
SNHG1-216ENST00000541416 MTUS2Q5JR59 1369 aa19.83■□□□□ 0.77
SNHG1-216ENST00000541416 A2MP01023 1474 aa19.83■□□□□ 0.76
SNHG1-216ENST00000541416 LTBP4Q8N2S1 1624 aa19.83■□□□□ 0.76
SNHG1-216ENST00000541416 PPP6R1Q9UPN7 881 aa19.82■□□□□ 0.76
SNHG1-216ENST00000541416 INO80Q9ULG1 1556 aaPredicted RBP19.81■□□□□ 0.76
SNHG1-216ENST00000541416 PLXNC1O60486 1568 aa19.8■□□□□ 0.76
SNHG1-216ENST00000541416 PKD2Q13563 968 aa19.8■□□□□ 0.76
SNHG1-216ENST00000541416 CLTCQ00610 1675 aaKnown RBP19.8■□□□□ 0.76
SNHG1-216ENST00000541416 GGT6Q6P531 493 aa19.79■□□□□ 0.76
SNHG1-216ENST00000541416 PLA2R1Q13018 1463 aa19.78■□□□□ 0.76
SNHG1-216ENST00000541416 ADGBQ8N7X0 1667 aa19.78■□□□□ 0.76
SNHG1-216ENST00000541416 MYO3AQ8NEV4 1616 aa19.77■□□□□ 0.76
SNHG1-216ENST00000541416 SOCS7O14512 581 aa19.77■□□□□ 0.76
SNHG1-216ENST00000541416 SPATA31D1Q6ZQQ2 1576 aa19.77■□□□□ 0.76
SNHG1-216ENST00000541416 ZNF142P52746 1687 aaPredicted RBP19.77■□□□□ 0.76
SNHG1-216ENST00000541416 NCKAP5LQ9HCH0 1330 aa19.76■□□□□ 0.75
SNHG1-216ENST00000541416 CEP170BQ9Y4F5 1589 aaPredicted RBP19.75■□□□□ 0.75
SNHG1-216ENST00000541416 PTPRKQ15262 1439 aa19.75■□□□□ 0.75
SNHG1-216ENST00000541416 ILDR2Q71H61 639 aa19.74■□□□□ 0.75
SNHG1-216ENST00000541416 EHBP1L1Q8N3D4 1523 aa19.72■□□□□ 0.75
SNHG1-216ENST00000541416 RTEL1-TNFRSF6BF6WH68 1400 aa19.71■□□□□ 0.75
SNHG1-216ENST00000541416 UBAP1LF5GYI3 381 aa19.71■□□□□ 0.75
SNHG1-216ENST00000541416 ZNF335Q9H4Z2 1342 aaPredicted RBP19.71■□□□□ 0.75
SNHG1-216ENST00000541416 TCOF1Q13428 1488 aaKnown RBP19.7■□□□□ 0.74
SNHG1-216ENST00000541416 TIAM1Q13009 1591 aa19.69■□□□□ 0.74
SNHG1-216ENST00000541416 A2ML1A8K2U0 1454 aa19.67■□□□□ 0.74
SNHG1-216ENST00000541416 ZNF644Q9H582 1327 aaPredicted RBP19.67■□□□□ 0.74
SNHG1-216ENST00000541416 DHX29Q7Z478 1369 aaKnown RBP19.67■□□□□ 0.74
SNHG1-216ENST00000541416 CEP162Q5TB80 1403 aa19.67■□□□□ 0.74
SNHG1-216ENST00000541416 MBD5Q9P267 1494 aa19.67■□□□□ 0.74
SNHG1-216ENST00000541416 RSPH4AQ5TD94 716 aa19.66■□□□□ 0.74
SNHG1-216ENST00000541416 FAM135AQ9P2D6 1515 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms