RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 TROQ12816 1431 aaPredicted RBP23.2■■□□□ 1.3
SNHG1-213ENST00000540725 POGZQ7Z3K3 1410 aa23.2■■□□□ 1.3
SNHG1-213ENST00000540725 YEATS2Q9ULM3 1422 aa23.2■■□□□ 1.3
SNHG1-213ENST00000540725 MAGI2Q86UL8 1455 aa23.2■■□□□ 1.3
SNHG1-213ENST00000540725 SIGLEC1Q9BZZ2 1709 aa23.19■■□□□ 1.3
SNHG1-213ENST00000540725 PCF11O94913 1555 aaKnown RBP23.17■■□□□ 1.3
SNHG1-213ENST00000540725 CLIP1P30622 1438 aa23.16■■□□□ 1.3
SNHG1-213ENST00000540725 EFCAB2Q5VUJ9 269 aa23.15■■□□□ 1.3
SNHG1-213ENST00000540725 ILDR1Q86SU0 546 aaPredicted RBP23.15■■□□□ 1.3
SNHG1-213ENST00000540725 ARHGAP5Q13017 1502 aa23.13■■□□□ 1.29
SNHG1-213ENST00000540725 CASKIN1Q8WXD9 1431 aa23.12■■□□□ 1.29
SNHG1-213ENST00000540725 CCDC18Q5T9S5 1454 aa23.11■■□□□ 1.29
SNHG1-213ENST00000540725 CDC42BPBQ9Y5S2 1711 aa23.1■■□□□ 1.29
SNHG1-213ENST00000540725 FER1L4A9Z1Z3 1794 aa23.09■■□□□ 1.29
SNHG1-213ENST00000540725 ZNF518AQ6AHZ1 1483 aa23.08■■□□□ 1.28
SNHG1-213ENST00000540725 ATP10AO60312 1499 aa23.07■■□□□ 1.28
SNHG1-213ENST00000540725 PREX2Q70Z35 1606 aa23.06■■□□□ 1.28
SNHG1-213ENST00000540725 LMTK3Q96Q04 1460 aa23.06■■□□□ 1.28
SNHG1-213ENST00000540725 KDM5CP41229 1560 aa23.06■■□□□ 1.28
SNHG1-213ENST00000540725 FYCO1Q9BQS8 1478 aa23.05■■□□□ 1.28
SNHG1-213ENST00000540725 C9orf84Q5VXU9 1444 aa23.05■■□□□ 1.28
SNHG1-213ENST00000540725 MLECQ14165 292 aa23.03■■□□□ 1.28
SNHG1-213ENST00000540725 CDC42BPAQ5VT25 1732 aa23.01■■□□□ 1.27
SNHG1-213ENST00000540725 PLPPR3Q6T4P5 718 aa23.01■■□□□ 1.27
SNHG1-213ENST00000540725 ARHGEF12Q9NZN5 1544 aa23■■□□□ 1.27
SNHG1-213ENST00000540725 AFAP1Q8N556 730 aa23■■□□□ 1.27
SNHG1-213ENST00000540725 ABCC1P33527 1531 aa22.99■■□□□ 1.27
SNHG1-213ENST00000540725 ITSN2Q9NZM3 1697 aa22.99■■□□□ 1.27
SNHG1-213ENST00000540725 DIP2CQ9Y2E4 1556 aa22.98■■□□□ 1.27
SNHG1-213ENST00000540725 ABCA6Q8N139 1617 aa22.96■■□□□ 1.27
SNHG1-213ENST00000540725 MYT1LQ9UL68 1186 aa22.95■■□□□ 1.26
SNHG1-213ENST00000540725 MLH3Q9UHC1 1453 aa22.94■■□□□ 1.26
SNHG1-213ENST00000540725 REREQ9P2R6 1566 aa22.94■■□□□ 1.26
SNHG1-213ENST00000540725 TRAPPC8Q9Y2L5 1435 aa22.93■■□□□ 1.26
SNHG1-213ENST00000540725 HSPA2P54652 639 aa22.91■■□□□ 1.26
SNHG1-213ENST00000540725 KIDINS220Q9ULH0 1771 aa22.89■■□□□ 1.26
SNHG1-213ENST00000540725 PREX1Q8TCU6 1659 aa22.89■■□□□ 1.25
SNHG1-213ENST00000540725 SAMD9LQ8IVG5 1584 aa22.88■■□□□ 1.25
SNHG1-213ENST00000540725 GPATCH8Q9UKJ3 1502 aaKnown RBP22.86■■□□□ 1.25
SNHG1-213ENST00000540725 SETD1BQ9UPS6 1966 aaKnown RBP22.86■■□□□ 1.25
SNHG1-213ENST00000540725 AGLP35573 1532 aa22.85■■□□□ 1.25
SNHG1-213ENST00000540725 SYCP2Q9BX26 1530 aa22.85■■□□□ 1.25
SNHG1-213ENST00000540725 CEBPAP49715 358 aaPredicted RBP22.84■■□□□ 1.25
SNHG1-213ENST00000540725 ZNF777Q9ULD5 760 aaPredicted RBP22.84■■□□□ 1.25
SNHG1-213ENST00000540725 FBXO41Q8TF61 875 aa22.82■■□□□ 1.24
SNHG1-213ENST00000540725 C3P01024 1663 aa22.81■■□□□ 1.24
SNHG1-213ENST00000540725 MTUS2Q5JR59 1369 aa22.8■■□□□ 1.24
SNHG1-213ENST00000540725 CCNB3Q8WWL7 1395 aa22.79■■□□□ 1.24
SNHG1-213ENST00000540725 PLEKHH2Q8IVE3 1493 aa22.77■■□□□ 1.24
SNHG1-213ENST00000540725 CEP162Q5TB80 1403 aa22.77■■□□□ 1.24
SNHG1-213ENST00000540725 CFDP1Q9UEE9 299 aaPredicted RBP22.76■■□□□ 1.23
SNHG1-213ENST00000540725 KIAA1107Q9UPP5 1409 aa22.76■■□□□ 1.23
SNHG1-213ENST00000540725 HNRNPMP52272 730 aaKnown RBP eCLIP22.76■■□□□ 1.23
SNHG1-213ENST00000540725 EHBP1L1Q8N3D4 1523 aa22.75■■□□□ 1.23
SNHG1-213ENST00000540725 SPAG9O60271 1321 aaKnown RBP22.75■■□□□ 1.23
SNHG1-213ENST00000540725 ATP7AQ04656 1500 aa22.75■■□□□ 1.23
SNHG1-213ENST00000540725 INO80Q9ULG1 1556 aaPredicted RBP22.74■■□□□ 1.23
SNHG1-213ENST00000540725 UHRF1BP1Q6BDS2 1440 aa22.74■■□□□ 1.23
SNHG1-213ENST00000540725 SUPT6HQ7KZ85 1726 aaKnown RBP22.74■■□□□ 1.23
SNHG1-213ENST00000540725 TIAM1Q13009 1591 aa22.74■■□□□ 1.23
SNHG1-213ENST00000540725 ESF1Q9H501 851 aaKnown RBP22.74■■□□□ 1.23
SNHG1-213ENST00000540725 STRCQ7RTU9 1775 aa22.71■■□□□ 1.23
SNHG1-213ENST00000540725 CNTLNQ9NXG0 1405 aa22.71■■□□□ 1.23
SNHG1-213ENST00000540725 MROH2AA6NES4 1674 aa22.7■■□□□ 1.22
SNHG1-213ENST00000540725 PLXNC1O60486 1568 aa22.68■■□□□ 1.22
SNHG1-213ENST00000540725 A2MP01023 1474 aa22.66■■□□□ 1.22
SNHG1-213ENST00000540725 ADGBQ8N7X0 1667 aa22.66■■□□□ 1.22
SNHG1-213ENST00000540725 ZNF644Q9H582 1327 aaPredicted RBP22.65■■□□□ 1.22
SNHG1-213ENST00000540725 CLTCQ00610 1675 aaKnown RBP22.64■■□□□ 1.21
SNHG1-213ENST00000540725 MBD5Q9P267 1494 aa22.62■■□□□ 1.21
SNHG1-213ENST00000540725 CERKQ8TCT0 537 aa22.62■■□□□ 1.21
SNHG1-213ENST00000540725 DMRT2Q9Y5R5 561 aa22.61■■□□□ 1.21
SNHG1-213ENST00000540725 NCOA2Q15596 1464 aa22.6■■□□□ 1.21
SNHG1-213ENST00000540725 NPATQ14207 1427 aa22.59■■□□□ 1.21
SNHG1-213ENST00000540725 ZMYM3Q14202 1370 aa22.59■■□□□ 1.21
SNHG1-213ENST00000540725 RTEL1-TNFRSF6BF6WH68 1400 aa22.56■■□□□ 1.2
SNHG1-213ENST00000540725 CAMSAP2Q08AD1 1489 aa22.56■■□□□ 1.2
SNHG1-213ENST00000540725 PTPRTO14522 1441 aa22.54■■□□□ 1.2
SNHG1-213ENST00000540725 GGT6Q6P531 493 aa22.54■■□□□ 1.2
SNHG1-213ENST00000540725 CCDC141Q6ZP82 1450 aa22.54■■□□□ 1.2
SNHG1-213ENST00000540725 NCOA1Q15788 1441 aa22.53■■□□□ 1.2
SNHG1-213ENST00000540725 VPS8Q8N3P4 1428 aa22.53■■□□□ 1.2
SNHG1-213ENST00000540725 MYO3AQ8NEV4 1616 aa22.53■■□□□ 1.2
SNHG1-213ENST00000540725 ZNF142P52746 1687 aaPredicted RBP22.52■■□□□ 1.2
SNHG1-213ENST00000540725 LOC105371045A0A1W2PR82 267 aa22.51■■□□□ 1.19
SNHG1-213ENST00000540725 CAMSAP1Q5T5Y3 1602 aa22.51■■□□□ 1.19
SNHG1-213ENST00000540725 PPP6R1Q9UPN7 881 aa22.5■■□□□ 1.19
SNHG1-213ENST00000540725 DHX29Q7Z478 1369 aaKnown RBP22.49■■□□□ 1.19
SNHG1-213ENST00000540725 PTPRKQ15262 1439 aa22.49■■□□□ 1.19
SNHG1-213ENST00000540725 LRRC9Q6ZRR7 1453 aa22.48■■□□□ 1.19
SNHG1-213ENST00000540725 ARHGEF5Q12774 1597 aa22.47■■□□□ 1.19
SNHG1-213ENST00000540725 CEP170BQ9Y4F5 1589 aaPredicted RBP22.46■■□□□ 1.19
SNHG1-213ENST00000540725 RSPH4AQ5TD94 716 aa22.46■■□□□ 1.19
SNHG1-213ENST00000540725 LTBP4Q8N2S1 1624 aa22.42■■□□□ 1.18
SNHG1-213ENST00000540725 KIF3BO15066 747 aa22.42■■□□□ 1.18
SNHG1-213ENST00000540725 MAP3K1Q13233 1512 aa22.42■■□□□ 1.18
SNHG1-213ENST00000540725 FAM135AQ9P2D6 1515 aa22.41■■□□□ 1.18
SNHG1-213ENST00000540725 KDM5DQ9BY66 1539 aa22.41■■□□□ 1.18
SNHG1-213ENST00000540725 PLA2R1Q13018 1463 aa22.4■■□□□ 1.18
SNHG1-213ENST00000540725 NCKAP5LQ9HCH0 1330 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms