RNA–Protein interactions for RNA: ENST00000539097.2

HIF1A-204, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-204ENST00000539097 CAMK2BQ13554 666 aa2.28□□□□□ -2.04
HIF1A-204ENST00000539097 POTEBQ6S5H4 581 aa2.28□□□□□ -2.04
HIF1A-204ENST00000539097 CD44P16070 742 aaKnown RBP2.28□□□□□ -2.04
HIF1A-204ENST00000539097 NLRP6P59044 892 aa2.28□□□□□ -2.04
HIF1A-204ENST00000539097 TULP1O00294 542 aaPredicted RBP2.28□□□□□ -2.04
HIF1A-204ENST00000539097 PRR29P0C7W0 189 aa2.28□□□□□ -2.04
HIF1A-204ENST00000539097 FBXO22Q8NEZ5 403 aa2.28□□□□□ -2.04
HIF1A-204ENST00000539097 SEMA3EO15041 775 aa2.27□□□□□ -2.05
HIF1A-204ENST00000539097 MAP3K13O43283 966 aa2.27□□□□□ -2.05
HIF1A-204ENST00000539097 PAK3O75914 559 aaPredicted RBP2.27□□□□□ -2.05
HIF1A-204ENST00000539097 FARP1Q9Y4F1 1045 aaPredicted RBP2.27□□□□□ -2.05
HIF1A-204ENST00000539097 ONECUT3O60422 494 aaPredicted RBP2.27□□□□□ -2.05
HIF1A-204ENST00000539097 TIE1P35590 1138 aa2.27□□□□□ -2.05
HIF1A-204ENST00000539097 ST18O60284 1047 aa2.26□□□□□ -2.05
HIF1A-204ENST00000539097 PHF8Q9UPP1 1060 aa2.26□□□□□ -2.05
HIF1A-204ENST00000539097 EFCAB3Q8N7B9 438 aa2.26□□□□□ -2.05
HIF1A-204ENST00000539097 GOPCQ9HD26 462 aa2.26□□□□□ -2.05
HIF1A-204ENST00000539097 TUSC1Q2TAM9 212 aa2.25□□□□□ -2.05
HIF1A-204ENST00000539097 PHF12Q96QT6 1004 aa2.25□□□□□ -2.05
HIF1A-204ENST00000539097 PDE4AP27815 886 aa2.25□□□□□ -2.05
HIF1A-204ENST00000539097 DHX30Q7L2E3 1194 aaKnown RBP eCLIP2.25□□□□□ -2.05
HIF1A-204ENST00000539097 BRPF1P55201 1214 aaPredicted RBP2.24□□□□□ -2.05
HIF1A-204ENST00000539097 DPY19L2Q6NUT2 758 aa2.24□□□□□ -2.05
HIF1A-204ENST00000539097 METRNQ9UJH8 293 aa2.24□□□□□ -2.05
HIF1A-204ENST00000539097 MLLT3P42568 568 aaPredicted RBP2.24□□□□□ -2.05
HIF1A-204ENST00000539097 KIF12Q96FN5 646 aa2.24□□□□□ -2.05
HIF1A-204ENST00000539097 KDM4FA0A1W2PPD8 638 aa2.23□□□□□ -2.05
HIF1A-204ENST00000539097 SLC34A2O95436 690 aa2.23□□□□□ -2.05
HIF1A-204ENST00000539097 CABP2Q9NPB3 220 aa2.23□□□□□ -2.05
HIF1A-204ENST00000539097 FAM163AQ96GL9 167 aaPredicted RBP2.23□□□□□ -2.05
HIF1A-204ENST00000539097 LMOD2Q6P5Q4 547 aa2.22□□□□□ -2.05
HIF1A-204ENST00000539097 GPBP1L1Q9HC44 474 aaPredicted RBP2.22□□□□□ -2.05
HIF1A-204ENST00000539097 PSEN1P49768 467 aa2.22□□□□□ -2.05
HIF1A-204ENST00000539097 PRIM1P49642 420 aaKnown RBP2.22□□□□□ -2.05
HIF1A-204ENST00000539097 SLC24A3Q9HC58 644 aa2.22□□□□□ -2.05
HIF1A-204ENST00000539097 ZSWIM6Q9HCJ5 1215 aa2.22□□□□□ -2.05
HIF1A-204ENST00000539097 EMILIN3Q9NT22 766 aa2.22□□□□□ -2.05
HIF1A-204ENST00000539097 TESPA1A2RU30 521 aaPredicted RBP2.21□□□□□ -2.06
HIF1A-204ENST00000539097 PDE4CQ08493 712 aa2.21□□□□□ -2.06
HIF1A-204ENST00000539097 NBR1Q14596 966 aa2.21□□□□□ -2.06
HIF1A-204ENST00000539097 ZC3H15Q8WU90 426 aaKnown RBP2.21□□□□□ -2.06
HIF1A-204ENST00000539097 RBM27Q9P2N5 1060 aaKnown RBP2.21□□□□□ -2.06
HIF1A-204ENST00000539097 GJA5P36382 358 aa2.21□□□□□ -2.06
HIF1A-204ENST00000539097 IRX5P78411 483 aaPredicted RBP2.21□□□□□ -2.06
HIF1A-204ENST00000539097 RBM26Q5T8P6 1007 aaKnown RBP2.21□□□□□ -2.06
HIF1A-204ENST00000539097 TMEM92Q6UXU6 159 aa2.21□□□□□ -2.06
HIF1A-204ENST00000539097 MS4A3Q96HJ5 214 aa2.21□□□□□ -2.06
HIF1A-204ENST00000539097 L3MBTL3Q96JM7 780 aaPredicted RBP2.21□□□□□ -2.06
HIF1A-204ENST00000539097 GALR2O43603 387 aaPredicted RBP2.21□□□□□ -2.06
HIF1A-204ENST00000539097 CRISPLD2Q9H0B8 497 aa2.21□□□□□ -2.06
HIF1A-204ENST00000539097 GPR37O15354 613 aa2.2□□□□□ -2.06
HIF1A-204ENST00000539097 CERKQ8TCT0 537 aa2.2□□□□□ -2.06
HIF1A-204ENST00000539097 ARXQ96QS3 562 aa2.2□□□□□ -2.06
HIF1A-204ENST00000539097 FECHP22830 423 aa2.2□□□□□ -2.06
HIF1A-204ENST00000539097 PSDA5PKW4 1024 aaPredicted RBP2.19□□□□□ -2.06
HIF1A-204ENST00000539097 RBAK-RBAKDNI3L0D1 243 aa2.19□□□□□ -2.06
HIF1A-204ENST00000539097 PDCD7Q8N8D1 485 aaKnown RBP2.19□□□□□ -2.06
HIF1A-204ENST00000539097 EPAS1Q99814 870 aa2.19□□□□□ -2.06
HIF1A-204ENST00000539097 WDR70Q9NW82 654 aa2.19□□□□□ -2.06
HIF1A-204ENST00000539097 GTF3C3Q9Y5Q9 886 aa2.19□□□□□ -2.06
HIF1A-204ENST00000539097 TBC1D12O60347 775 aa2.18□□□□□ -2.06
HIF1A-204ENST00000539097 CCDC125Q86Z20 511 aa2.18□□□□□ -2.06
HIF1A-204ENST00000539097 LARP6Q9BRS8 491 aaKnown RBP2.18□□□□□ -2.06
HIF1A-204ENST00000539097 C1orf115Q9H7X2 142 aa2.18□□□□□ -2.06
HIF1A-204ENST00000539097 ANO8Q9HCE9 1232 aaPredicted RBP2.18□□□□□ -2.06
HIF1A-204ENST00000539097 TTLL13PA6NNM8 815 aa2.18□□□□□ -2.06
HIF1A-204ENST00000539097 PATL2C9JE40 543 aaKnown RBP2.18□□□□□ -2.06
HIF1A-204ENST00000539097 DSG2Q14126 1118 aa2.18□□□□□ -2.06
HIF1A-204ENST00000539097 FBXO31Q5XUX0 539 aaPredicted RBP2.18□□□□□ -2.06
HIF1A-204ENST00000539097 BARGINQ6ZT62 677 aa2.18□□□□□ -2.06
HIF1A-204ENST00000539097 BMP2KQ9NSY1 1161 aaPredicted RBP2.18□□□□□ -2.06
HIF1A-204ENST00000539097 ZMYND10O75800 440 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 LAPTM4AQ15012 233 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 E2F4Q16254 413 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 SLC4A5Q9BY07 1137 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 DPYSL4O14531 572 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 KIF3CO14782 793 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 REPIN1Q9BWE0 567 aaKnown RBP2.17□□□□□ -2.06
HIF1A-204ENST00000539097 GPHNQ9NQX3 736 aaPredicted RBP2.17□□□□□ -2.06
HIF1A-204ENST00000539097 ZRANB1Q9UGI0 708 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 DIXDC1Q155Q3 683 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 NECTIN2Q92692 538 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 TRIM52Q96A61 297 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 TMEM106CQ9BVX2 250 aa2.17□□□□□ -2.06
HIF1A-204ENST00000539097 COLQQ9Y215 455 aaPredicted RBP2.17□□□□□ -2.06
HIF1A-204ENST00000539097 MINK1Q8N4C8 1332 aaPredicted RBP2.16□□□□□ -2.06
HIF1A-204ENST00000539097 SUPT5HO00267 1087 aaKnown RBP2.16□□□□□ -2.06
HIF1A-204ENST00000539097 FOXK1P85037 733 aa2.16□□□□□ -2.06
HIF1A-204ENST00000539097 NLRP7Q8WX94 980 aa2.16□□□□□ -2.06
HIF1A-204ENST00000539097 PHOX2BQ99453 314 aa2.16□□□□□ -2.06
HIF1A-204ENST00000539097 ATN1P54259 1190 aaPredicted RBP2.16□□□□□ -2.06
HIF1A-204ENST00000539097 MCCD1P59942 119 aaPredicted RBP2.16□□□□□ -2.06
HIF1A-204ENST00000539097 AK7Q96M32 723 aa2.16□□□□□ -2.06
HIF1A-204ENST00000539097 KRTAP4-8Q9BYQ9 185 aa2.16□□□□□ -2.06
HIF1A-204ENST00000539097 TRIM35Q9UPQ4 493 aa2.16□□□□□ -2.06
HIF1A-204ENST00000539097 PDIA6Q15084 440 aa2.15□□□□□ -2.06
HIF1A-204ENST00000539097 BANK1Q8NDB2 785 aa2.15□□□□□ -2.06
HIF1A-204ENST00000539097 PLEKHG3A1L390 1219 aa2.15□□□□□ -2.07
HIF1A-204ENST00000539097 AMHR2Q16671 573 aa2.15□□□□□ -2.07
HIF1A-204ENST00000539097 FAM161AQ3B820 660 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms