RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 PATL2C9JE40 543 aaKnown RBP7.11□□□□□ -1.27
CSMD1-215ENST00000537824 KNSTRNQ9Y448 316 aa7.11□□□□□ -1.27
CSMD1-215ENST00000537824 RRP7BPQ9NSQ0 103 aa7.1□□□□□ -1.27
CSMD1-215ENST00000537824 MS4A1P11836 297 aa7.1□□□□□ -1.27
CSMD1-215ENST00000537824 BAZ2BQ9UIF8 2168 aaKnown RBP7.1□□□□□ -1.27
CSMD1-215ENST00000537824 MFAP1P55081 439 aaKnown RBP7.1□□□□□ -1.27
CSMD1-215ENST00000537824 CSPP1Q1MSJ5 1256 aa7.1□□□□□ -1.27
CSMD1-215ENST00000537824 TEX35Q5T0J7 233 aa7.1□□□□□ -1.27
CSMD1-215ENST00000537824 CFAP53Q96M91 514 aa7.1□□□□□ -1.27
CSMD1-215ENST00000537824 PDE4CQ08493 712 aa7.1□□□□□ -1.27
CSMD1-215ENST00000537824 RRP9O43818 475 aaKnown RBP7.09□□□□□ -1.27
CSMD1-215ENST00000537824 NOM1Q5C9Z4 860 aaKnown RBP7.09□□□□□ -1.27
CSMD1-215ENST00000537824 CNTRLQ7Z7A1 2325 aa7.09□□□□□ -1.27
CSMD1-215ENST00000537824 ANKRD12Q6UB98 2062 aa7.09□□□□□ -1.27
CSMD1-215ENST00000537824 ZNF592Q92610 1267 aa7.09□□□□□ -1.28
CSMD1-215ENST00000537824 OS9Q13438 667 aaPredicted RBP7.09□□□□□ -1.28
CSMD1-215ENST00000537824 GPS2Q13227 327 aa7.08□□□□□ -1.28
CSMD1-215ENST00000537824 R3HCC1Q9Y3T6 440 aaKnown RBP7.08□□□□□ -1.28
CSMD1-215ENST00000537824 PDE4AP27815 886 aa7.08□□□□□ -1.28
CSMD1-215ENST00000537824 CC2D1BQ5T0F9 858 aaKnown RBP7.08□□□□□ -1.28
CSMD1-215ENST00000537824 SIN3AQ96ST3 1273 aa7.08□□□□□ -1.28
CSMD1-215ENST00000537824 RBM10P98175 930 aaKnown RBP7.08□□□□□ -1.28
CSMD1-215ENST00000537824 APBB1O00213 710 aa7.07□□□□□ -1.28
CSMD1-215ENST00000537824 EEA1Q15075 1411 aa7.07□□□□□ -1.28
CSMD1-215ENST00000537824 CHMP4BQ9H444 224 aaKnown RBP7.07□□□□□ -1.28
CSMD1-215ENST00000537824 MTERF4Q7Z6M4 381 aaKnown RBP7.07□□□□□ -1.28
CSMD1-215ENST00000537824 UBE2Q2Q8WVN8 375 aa7.07□□□□□ -1.28
CSMD1-215ENST00000537824 NUMA1Q14980 2115 aa7.07□□□□□ -1.28
CSMD1-215ENST00000537824 GNL2Q13823 731 aaKnown RBP7.06□□□□□ -1.28
CSMD1-215ENST00000537824 KIAA1211Q6ZU35 1233 aa7.06□□□□□ -1.28
CSMD1-215ENST00000537824 KCNH8Q96L42 1107 aa7.06□□□□□ -1.28
CSMD1-215ENST00000537824 TAF7LQ5H9L4 462 aa7.06□□□□□ -1.28
CSMD1-215ENST00000537824 TPM4P67936 248 aa7.05□□□□□ -1.28
CSMD1-215ENST00000537824 ZCCHC6Q5VYS8 1495 aaKnown RBP7.05□□□□□ -1.28
CSMD1-215ENST00000537824 MTUS2Q5JR59 1369 aa7.05□□□□□ -1.28
CSMD1-215ENST00000537824 RWDD1Q9H446 243 aaPredicted RBP7.05□□□□□ -1.28
CSMD1-215ENST00000537824 NUDCQ9Y266 331 aa7.05□□□□□ -1.28
CSMD1-215ENST00000537824 BCL11BQ9C0K0 894 aaPredicted RBP7.05□□□□□ -1.28
CSMD1-215ENST00000537824 CCDC66A2RUB6 948 aa7.05□□□□□ -1.28
CSMD1-215ENST00000537824 NASPP49321 788 aaPredicted RBP7.05□□□□□ -1.28
CSMD1-215ENST00000537824 SKOR2Q2VWA4 1001 aaPredicted RBP7.05□□□□□ -1.28
CSMD1-215ENST00000537824 CWC15Q9P013 229 aaKnown RBP7.05□□□□□ -1.28
CSMD1-215ENST00000537824 KIF16BQ96L93 1317 aa7.05□□□□□ -1.28
CSMD1-215ENST00000537824 STAG3Q9UJ98 1225 aa7.05□□□□□ -1.28
CSMD1-215ENST00000537824 SENP3Q9H4L4 574 aaPredicted RBP7.04□□□□□ -1.28
CSMD1-215ENST00000537824 NOL8Q76FK4 1167 aaKnown RBP7.04□□□□□ -1.28
CSMD1-215ENST00000537824 DDX49Q9Y6V7 483 aaKnown RBP7.04□□□□□ -1.28
CSMD1-215ENST00000537824 MAPK8IP3Q9UPT6 1336 aa7.04□□□□□ -1.28
CSMD1-215ENST00000537824 TPM3P06753 285 aa7.03□□□□□ -1.28
CSMD1-215ENST00000537824 GOLGA3Q08378 1498 aa7.03□□□□□ -1.28
CSMD1-215ENST00000537824 CFAP65Q6ZU64 1925 aaKnown RBP7.02□□□□□ -1.28
CSMD1-215ENST00000537824 CROCCQ5TZA2 2017 aa7.02□□□□□ -1.28
CSMD1-215ENST00000537824 CLSTN1O94985 981 aa7.02□□□□□ -1.29
CSMD1-215ENST00000537824 CFAP44Q96MT7 982 aa7.02□□□□□ -1.29
CSMD1-215ENST00000537824 PRDM10Q9NQV6 1147 aa7.02□□□□□ -1.29
CSMD1-215ENST00000537824 NFKBIBQ15653 356 aa7.02□□□□□ -1.29
CSMD1-215ENST00000537824 FAM161AQ3B820 660 aa7.02□□□□□ -1.29
CSMD1-215ENST00000537824 ITPRIPQ8IWB1 547 aa7.02□□□□□ -1.29
CSMD1-215ENST00000537824 KNL1Q8NG31 2342 aa7.02□□□□□ -1.29
CSMD1-215ENST00000537824 FBLN2P98095 1184 aa7.01□□□□□ -1.29
CSMD1-215ENST00000537824 PAK3O75914 559 aaPredicted RBP7.01□□□□□ -1.29
CSMD1-215ENST00000537824 FOXD4L6Q3SYB3 417 aaPredicted RBP7.01□□□□□ -1.29
CSMD1-215ENST00000537824 FOXD4L3Q6VB84 417 aaPredicted RBP7.01□□□□□ -1.29
CSMD1-215ENST00000537824 KTN1Q86UP2 1357 aaKnown RBP7.01□□□□□ -1.29
CSMD1-215ENST00000537824 NCBP3Q53F19 620 aaKnown RBP7.01□□□□□ -1.29
CSMD1-215ENST00000537824 CARD11Q9BXL7 1154 aa7.01□□□□□ -1.29
CSMD1-215ENST00000537824 RGL3Q3MIN7 710 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 CCDC39Q9UFE4 941 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 A0A0G2JS52 829 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 CDCA8Q53HL2 280 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 ZHX1Q9UKY1 873 aaPredicted RBP7□□□□□ -1.29
CSMD1-215ENST00000537824 KAT6AQ92794 2004 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 RRP12Q5JTH9 1297 aaKnown RBP7□□□□□ -1.29
CSMD1-215ENST00000537824 ZMYND15Q9H091 742 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 PLEKHG5O94827 1062 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 PDE4DIPQ5VU43 2346 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 HSP90AB3PQ58FF7 597 aa7□□□□□ -1.29
CSMD1-215ENST00000537824 U2SURPO15042 1029 aaKnown RBP7□□□□□ -1.29
CSMD1-215ENST00000537824 RDXP35241 583 aaKnown RBP6.99□□□□□ -1.29
CSMD1-215ENST00000537824 TAF3Q5VWG9 929 aa6.99□□□□□ -1.29
CSMD1-215ENST00000537824 BAZ1BQ9UIG0 1483 aaKnown RBP6.99□□□□□ -1.29
CSMD1-215ENST00000537824 PMFBP1Q8TBY8 1022 aa6.99□□□□□ -1.29
CSMD1-215ENST00000537824 HSPA5P11021 654 aaKnown RBP6.99□□□□□ -1.29
CSMD1-215ENST00000537824 GOLGA6L19H0YKK7 550 aa6.99□□□□□ -1.29
CSMD1-215ENST00000537824 IFT57Q9NWB7 429 aa6.99□□□□□ -1.29
CSMD1-215ENST00000537824 UQCRHLA0A096LP55 91 aa6.99□□□□□ -1.29
CSMD1-215ENST00000537824 ST18O60284 1047 aa6.99□□□□□ -1.29
CSMD1-215ENST00000537824 UQCRHP07919 91 aa6.99□□□□□ -1.29
CSMD1-215ENST00000537824 AEBP1Q8IUX7 1158 aa6.99□□□□□ -1.29
CSMD1-215ENST00000537824 IPO8O15397 1037 aaKnown RBP6.99□□□□□ -1.29
CSMD1-215ENST00000537824 CREBRFQ8IUR6 639 aa6.98□□□□□ -1.29
CSMD1-215ENST00000537824 CCDC70Q6NSX1 233 aa6.98□□□□□ -1.29
CSMD1-215ENST00000537824 CENPQQ7L2Z9 268 aaPredicted RBP6.98□□□□□ -1.29
CSMD1-215ENST00000537824 ERICH4A6NGS2 130 aa6.98□□□□□ -1.29
CSMD1-215ENST00000537824 HSP90B1P14625 803 aaKnown RBP6.98□□□□□ -1.29
CSMD1-215ENST00000537824 MRE11P49959 708 aa6.98□□□□□ -1.29
CSMD1-215ENST00000537824 HOMER1Q86YM7 354 aa6.98□□□□□ -1.29
CSMD1-215ENST00000537824 ARGLU1Q9NWB6 273 aaPredicted RBP6.98□□□□□ -1.29
CSMD1-215ENST00000537824 DIAPH3Q9NSV4 1193 aa6.98□□□□□ -1.29
CSMD1-215ENST00000537824 FRAT2O75474 233 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms