RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CTTNBP2Q8WZ74 1663 aa15.97■□□□□ 0.15
USP28-205ENST00000537706 ARHGEF12Q9NZN5 1544 aa15.96■□□□□ 0.15
USP28-205ENST00000537706 PHF23Q9BUL5 403 aaPredicted RBP15.96■□□□□ 0.14
USP28-205ENST00000537706 PLEKHD1A6NEE1 506 aa15.94■□□□□ 0.14
USP28-205ENST00000537706 ESF1Q9H501 851 aaKnown RBP15.94■□□□□ 0.14
USP28-205ENST00000537706 C9orf84Q5VXU9 1444 aa15.94■□□□□ 0.14
USP28-205ENST00000537706 P3H3Q8IVL6 736 aa15.93■□□□□ 0.14
USP28-205ENST00000537706 ATP10AO60312 1499 aa15.93■□□□□ 0.14
USP28-205ENST00000537706 HECW1Q76N89 1606 aa15.89■□□□□ 0.13
USP28-205ENST00000537706 MED1Q15648 1581 aaPredicted RBP15.88■□□□□ 0.13
USP28-205ENST00000537706 SCAF1Q9H7N4 1312 aaKnown RBP15.88■□□□□ 0.13
USP28-205ENST00000537706 SETD1BQ9UPS6 1966 aaKnown RBP15.87■□□□□ 0.13
USP28-205ENST00000537706 SIGLEC1Q9BZZ2 1709 aa15.87■□□□□ 0.13
USP28-205ENST00000537706 NCOA1Q15788 1441 aa15.87■□□□□ 0.13
USP28-205ENST00000537706 RAPGEF6Q8TEU7 1601 aa15.87■□□□□ 0.13
USP28-205ENST00000537706 SCAPERQ9BY12 1400 aa15.86■□□□□ 0.13
USP28-205ENST00000537706 MYT1LQ9UL68 1186 aa15.85■□□□□ 0.13
USP28-205ENST00000537706 TRAPPC8Q9Y2L5 1435 aa15.85■□□□□ 0.13
USP28-205ENST00000537706 HSPA1LP34931 641 aa15.83■□□□□ 0.12
USP28-205ENST00000537706 ZNF335Q9H4Z2 1342 aaPredicted RBP15.82■□□□□ 0.12
USP28-205ENST00000537706 TOM1O60784 492 aa15.81■□□□□ 0.12
USP28-205ENST00000537706 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.8■□□□□ 0.12
USP28-205ENST00000537706 PIP4K2BP78356 416 aa15.8■□□□□ 0.12
USP28-205ENST00000537706 NUP153P49790 1475 aaKnown RBP15.79■□□□□ 0.12
USP28-205ENST00000537706 PKD2Q13563 968 aa15.79■□□□□ 0.12
USP28-205ENST00000537706 EFCAB2Q5VUJ9 269 aa15.78■□□□□ 0.12
USP28-205ENST00000537706 CNTLNQ9NXG0 1405 aa15.76■□□□□ 0.11
USP28-205ENST00000537706 CAMSAP1Q5T5Y3 1602 aa15.76■□□□□ 0.11
USP28-205ENST00000537706 NCKAP5LQ9HCH0 1330 aa15.76■□□□□ 0.11
USP28-205ENST00000537706 PLCH2O75038 1416 aa15.76■□□□□ 0.11
USP28-205ENST00000537706 ZNF518AQ6AHZ1 1483 aa15.74■□□□□ 0.11
USP28-205ENST00000537706 PRXQ9BXM0 1461 aa15.73■□□□□ 0.11
USP28-205ENST00000537706 C3P01024 1663 aa15.73■□□□□ 0.11
USP28-205ENST00000537706 PPP6R1Q9UPN7 881 aa15.72■□□□□ 0.11
USP28-205ENST00000537706 NPATQ14207 1427 aa15.71■□□□□ 0.11
USP28-205ENST00000537706 SAMD9Q5K651 1589 aa15.71■□□□□ 0.11
USP28-205ENST00000537706 AGLP35573 1532 aa15.69■□□□□ 0.1
USP28-205ENST00000537706 REREQ9P2R6 1566 aa15.69■□□□□ 0.1
USP28-205ENST00000537706 PLA2R1Q13018 1463 aa15.69■□□□□ 0.1
USP28-205ENST00000537706 AFAP1Q8N556 730 aa15.66■□□□□ 0.1
USP28-205ENST00000537706 PTPRKQ15262 1439 aa15.66■□□□□ 0.1
USP28-205ENST00000537706 CPS1P31327 1500 aa15.65■□□□□ 0.1
USP28-205ENST00000537706 DIP2CQ9Y2E4 1556 aa15.64■□□□□ 0.09
USP28-205ENST00000537706 CDK11AQ9UQ88 783 aaPredicted RBP15.63■□□□□ 0.09
USP28-205ENST00000537706 KDM5CP41229 1560 aa15.63■□□□□ 0.09
USP28-205ENST00000537706 RANGAP1P46060 587 aaPredicted RBP15.62■□□□□ 0.09
USP28-205ENST00000537706 TCOF1Q13428 1488 aaKnown RBP15.61■□□□□ 0.09
USP28-205ENST00000537706 MLH3Q9UHC1 1453 aa15.61■□□□□ 0.09
USP28-205ENST00000537706 ZMYM3Q14202 1370 aa15.61■□□□□ 0.09
USP28-205ENST00000537706 ARHGAP5Q13017 1502 aa15.59■□□□□ 0.09
USP28-205ENST00000537706 MYO5CQ9NQX4 1742 aa15.58■□□□□ 0.09
USP28-205ENST00000537706 MROH2AA6NES4 1674 aa15.56■□□□□ 0.08
USP28-205ENST00000537706 SHANK2Q9UPX8 1470 aa15.56■□□□□ 0.08
USP28-205ENST00000537706 CEP170BQ9Y4F5 1589 aaPredicted RBP15.55■□□□□ 0.08
USP28-205ENST00000537706 ABCA6Q8N139 1617 aa15.55■□□□□ 0.08
USP28-205ENST00000537706 SENP3Q9H4L4 574 aaPredicted RBP15.55■□□□□ 0.08
USP28-205ENST00000537706 ATP1B4Q9UN42 357 aaPredicted RBP15.55■□□□□ 0.08
USP28-205ENST00000537706 CDK13Q14004 1512 aaKnown RBP15.54■□□□□ 0.08
USP28-205ENST00000537706 ZNF142P52746 1687 aaPredicted RBP15.54■□□□□ 0.08
USP28-205ENST00000537706 SUPT6HQ7KZ85 1726 aaKnown RBP15.53■□□□□ 0.08
USP28-205ENST00000537706 MYO3AQ8NEV4 1616 aa15.53■□□□□ 0.08
USP28-205ENST00000537706 CLIP1P30622 1438 aa15.53■□□□□ 0.08
USP28-205ENST00000537706 RGS17Q9UGC6 210 aaPredicted RBP15.51■□□□□ 0.07
USP28-205ENST00000537706 KIF14Q15058 1648 aa15.5■□□□□ 0.07
USP28-205ENST00000537706 A2ML1A8K2U0 1454 aa15.49■□□□□ 0.07
USP28-205ENST00000537706 CSRNP3Q8WYN3 585 aa15.49■□□□□ 0.07
USP28-205ENST00000537706 ANKLE2Q86XL3 938 aa15.47■□□□□ 0.07
USP28-205ENST00000537706 TROQ12816 1431 aaPredicted RBP15.46■□□□□ 0.07
USP28-205ENST00000537706 POTEAQ6S8J7 498 aa15.44■□□□□ 0.06
USP28-205ENST00000537706 GGT6Q6P531 493 aa15.43■□□□□ 0.06
USP28-205ENST00000537706 ABCC1P33527 1531 aa15.43■□□□□ 0.06
USP28-205ENST00000537706 SPAG9O60271 1321 aaKnown RBP15.42■□□□□ 0.06
USP28-205ENST00000537706 CLTCQ00610 1675 aaKnown RBP15.42■□□□□ 0.06
USP28-205ENST00000537706 FMN1Q68DA7 1419 aa15.41■□□□□ 0.06
USP28-205ENST00000537706 DNMT1P26358 1616 aaKnown RBP15.41■□□□□ 0.06
USP28-205ENST00000537706 THEMISQ8N1K5 641 aaPredicted RBP15.41■□□□□ 0.06
USP28-205ENST00000537706 KIDINS220Q9ULH0 1771 aa15.4■□□□□ 0.06
USP28-205ENST00000537706 POLR1AO95602 1720 aaPredicted RBP15.39■□□□□ 0.05
USP28-205ENST00000537706 NPHP4O75161 1426 aaPredicted RBP15.39■□□□□ 0.05
USP28-205ENST00000537706 VWDEQ8N2E2 1590 aa15.39■□□□□ 0.05
USP28-205ENST00000537706 ALKQ9UM73 1620 aa15.39■□□□□ 0.05
USP28-205ENST00000537706 ITSN2Q9NZM3 1697 aa15.39■□□□□ 0.05
USP28-205ENST00000537706 RNF17Q9BXT8 1623 aaKnown RBP15.38■□□□□ 0.05
USP28-205ENST00000537706 TNRQ92752 1358 aa15.38■□□□□ 0.05
USP28-205ENST00000537706 NEURL4Q96JN8 1562 aa15.38■□□□□ 0.05
USP28-205ENST00000537706 A2MP01023 1474 aa15.36■□□□□ 0.05
USP28-205ENST00000537706 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.35■□□□□ 0.05
USP28-205ENST00000537706 ZNF777Q9ULD5 760 aaPredicted RBP15.35■□□□□ 0.05
USP28-205ENST00000537706 SAMD9LQ8IVG5 1584 aa15.35■□□□□ 0.05
USP28-205ENST00000537706 LRRC7Q96NW7 1537 aa15.34■□□□□ 0.05
USP28-205ENST00000537706 PREX2Q70Z35 1606 aa15.34■□□□□ 0.05
USP28-205ENST00000537706 SYNMO15061 1565 aa15.33■□□□□ 0.05
USP28-205ENST00000537706 FAM135AQ9P2D6 1515 aa15.33■□□□□ 0.05
USP28-205ENST00000537706 CDC42BPBQ9Y5S2 1711 aa15.33■□□□□ 0.05
USP28-205ENST00000537706 MED14O60244 1454 aa15.33■□□□□ 0.05
USP28-205ENST00000537706 UPF1Q92900 1129 aaKnown RBP eCLIP15.32■□□□□ 0.04
USP28-205ENST00000537706 EEA1Q15075 1411 aa15.31■□□□□ 0.04
USP28-205ENST00000537706 ATP7AQ04656 1500 aa15.3■□□□□ 0.04
USP28-205ENST00000537706 DEPDC5O75140 1603 aa15.29■□□□□ 0.04
USP28-205ENST00000537706 FAM135BQ49AJ0 1406 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms