RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 MADDQ8WXG6 1647 aa13.83□□□□□ -0.2
USP28-203ENST00000537490 POGZQ7Z3K3 1410 aa13.83□□□□□ -0.2
USP28-203ENST00000537490 MAGI2Q86UL8 1455 aa13.83□□□□□ -0.2
USP28-203ENST00000537490 MLECQ14165 292 aa13.83□□□□□ -0.2
USP28-203ENST00000537490 ZFYVE16Q7Z3T8 1539 aa13.83□□□□□ -0.2
USP28-203ENST00000537490 KIF14Q15058 1648 aa13.82□□□□□ -0.2
USP28-203ENST00000537490 PLPPR3Q6T4P5 718 aa13.81□□□□□ -0.2
USP28-203ENST00000537490 AFAP1Q8N556 730 aa13.81□□□□□ -0.2
USP28-203ENST00000537490 CLIP1P30622 1438 aa13.81□□□□□ -0.2
USP28-203ENST00000537490 CASKIN1Q8WXD9 1431 aa13.81□□□□□ -0.2
USP28-203ENST00000537490 SIGLEC1Q9BZZ2 1709 aa13.79□□□□□ -0.2
USP28-203ENST00000537490 ATP10AO60312 1499 aa13.78□□□□□ -0.2
USP28-203ENST00000537490 ARHGAP5Q13017 1502 aa13.78□□□□□ -0.2
USP28-203ENST00000537490 LRRIQ1Q96JM4 1722 aa13.78□□□□□ -0.2
USP28-203ENST00000537490 MYO5CQ9NQX4 1742 aa13.78□□□□□ -0.2
USP28-203ENST00000537490 RIMS1Q86UR5 1692 aaKnown RBP13.77□□□□□ -0.21
USP28-203ENST00000537490 PCF11O94913 1555 aaKnown RBP13.76□□□□□ -0.21
USP28-203ENST00000537490 LMTK3Q96Q04 1460 aa13.76□□□□□ -0.21
USP28-203ENST00000537490 MYT1LQ9UL68 1186 aa13.76□□□□□ -0.21
USP28-203ENST00000537490 CCDC18Q5T9S5 1454 aa13.75□□□□□ -0.21
USP28-203ENST00000537490 C9orf84Q5VXU9 1444 aa13.75□□□□□ -0.21
USP28-203ENST00000537490 HSPA2P54652 639 aa13.75□□□□□ -0.21
USP28-203ENST00000537490 ZNF518AQ6AHZ1 1483 aa13.74□□□□□ -0.21
USP28-203ENST00000537490 ARHGEF12Q9NZN5 1544 aa13.73□□□□□ -0.21
USP28-203ENST00000537490 TRAPPC8Q9Y2L5 1435 aa13.73□□□□□ -0.21
USP28-203ENST00000537490 CEBPAP49715 358 aaPredicted RBP13.72□□□□□ -0.21
USP28-203ENST00000537490 KDM5CP41229 1560 aa13.71□□□□□ -0.21
USP28-203ENST00000537490 FYCO1Q9BQS8 1478 aa13.71□□□□□ -0.21
USP28-203ENST00000537490 CDC42BPBQ9Y5S2 1711 aa13.7□□□□□ -0.22
USP28-203ENST00000537490 ZNF777Q9ULD5 760 aaPredicted RBP13.7□□□□□ -0.22
USP28-203ENST00000537490 MLH3Q9UHC1 1453 aa13.69□□□□□ -0.22
USP28-203ENST00000537490 PREX2Q70Z35 1606 aa13.68□□□□□ -0.22
USP28-203ENST00000537490 FBXO41Q8TF61 875 aa13.68□□□□□ -0.22
USP28-203ENST00000537490 ABCC1P33527 1531 aa13.68□□□□□ -0.22
USP28-203ENST00000537490 DIP2CQ9Y2E4 1556 aa13.67□□□□□ -0.22
USP28-203ENST00000537490 GPATCH8Q9UKJ3 1502 aaKnown RBP13.67□□□□□ -0.22
USP28-203ENST00000537490 FER1L4A9Z1Z3 1794 aa13.66□□□□□ -0.22
USP28-203ENST00000537490 HNRNPMP52272 730 aaKnown RBP eCLIP13.66□□□□□ -0.22
USP28-203ENST00000537490 ABCA6Q8N139 1617 aa13.64□□□□□ -0.23
USP28-203ENST00000537490 REREQ9P2R6 1566 aa13.64□□□□□ -0.23
USP28-203ENST00000537490 CFDP1Q9UEE9 299 aaPredicted RBP13.64□□□□□ -0.23
USP28-203ENST00000537490 CDC42BPAQ5VT25 1732 aa13.64□□□□□ -0.23
USP28-203ENST00000537490 AGLP35573 1532 aa13.63□□□□□ -0.23
USP28-203ENST00000537490 ITSN2Q9NZM3 1697 aa13.63□□□□□ -0.23
USP28-203ENST00000537490 MTUS2Q5JR59 1369 aa13.62□□□□□ -0.23
USP28-203ENST00000537490 CCNB3Q8WWL7 1395 aa13.62□□□□□ -0.23
USP28-203ENST00000537490 SAMD9LQ8IVG5 1584 aa13.62□□□□□ -0.23
USP28-203ENST00000537490 SPAG9O60271 1321 aaKnown RBP13.62□□□□□ -0.23
USP28-203ENST00000537490 ESF1Q9H501 851 aaKnown RBP13.61□□□□□ -0.23
USP28-203ENST00000537490 KIDINS220Q9ULH0 1771 aa13.6□□□□□ -0.23
USP28-203ENST00000537490 SYCP2Q9BX26 1530 aa13.6□□□□□ -0.23
USP28-203ENST00000537490 KIAA1107Q9UPP5 1409 aa13.6□□□□□ -0.23
USP28-203ENST00000537490 ZNF644Q9H582 1327 aaPredicted RBP13.6□□□□□ -0.23
USP28-203ENST00000537490 CEP162Q5TB80 1403 aa13.59□□□□□ -0.23
USP28-203ENST00000537490 UHRF1BP1Q6BDS2 1440 aa13.58□□□□□ -0.24
USP28-203ENST00000537490 PLEKHH2Q8IVE3 1493 aa13.57□□□□□ -0.24
USP28-203ENST00000537490 CERKQ8TCT0 537 aa13.56□□□□□ -0.24
USP28-203ENST00000537490 PREX1Q8TCU6 1659 aa13.56□□□□□ -0.24
USP28-203ENST00000537490 LOC105371045A0A1W2PR82 267 aa13.55□□□□□ -0.24
USP28-203ENST00000537490 CNTLNQ9NXG0 1405 aa13.55□□□□□ -0.24
USP28-203ENST00000537490 ZMYM3Q14202 1370 aa13.54□□□□□ -0.24
USP28-203ENST00000537490 SETD1BQ9UPS6 1966 aaKnown RBP13.54□□□□□ -0.24
USP28-203ENST00000537490 ATP7AQ04656 1500 aa13.54□□□□□ -0.24
USP28-203ENST00000537490 C3P01024 1663 aa13.53□□□□□ -0.24
USP28-203ENST00000537490 GGT6Q6P531 493 aa13.53□□□□□ -0.24
USP28-203ENST00000537490 DMRT2Q9Y5R5 561 aa13.53□□□□□ -0.24
USP28-203ENST00000537490 A2MP01023 1474 aa13.53□□□□□ -0.24
USP28-203ENST00000537490 MBD5Q9P267 1494 aa13.53□□□□□ -0.24
USP28-203ENST00000537490 EHBP1L1Q8N3D4 1523 aa13.53□□□□□ -0.24
USP28-203ENST00000537490 TIAM1Q13009 1591 aa13.53□□□□□ -0.24
USP28-203ENST00000537490 INO80Q9ULG1 1556 aaPredicted RBP13.5□□□□□ -0.25
USP28-203ENST00000537490 STRCQ7RTU9 1775 aa13.5□□□□□ -0.25
USP28-203ENST00000537490 SUPT6HQ7KZ85 1726 aaKnown RBP13.5□□□□□ -0.25
USP28-203ENST00000537490 PLXNC1O60486 1568 aa13.49□□□□□ -0.25
USP28-203ENST00000537490 NCOA2Q15596 1464 aa13.48□□□□□ -0.25
USP28-203ENST00000537490 NPATQ14207 1427 aa13.48□□□□□ -0.25
USP28-203ENST00000537490 RTEL1-TNFRSF6BF6WH68 1400 aa13.47□□□□□ -0.25
USP28-203ENST00000537490 PTPRTO14522 1441 aa13.47□□□□□ -0.25
USP28-203ENST00000537490 PPP6R1Q9UPN7 881 aa13.47□□□□□ -0.25
USP28-203ENST00000537490 DHX29Q7Z478 1369 aaKnown RBP13.46□□□□□ -0.25
USP28-203ENST00000537490 RSPH4AQ5TD94 716 aa13.45□□□□□ -0.26
USP28-203ENST00000537490 PTPRKQ15262 1439 aa13.45□□□□□ -0.26
USP28-203ENST00000537490 NCOA1Q15788 1441 aa13.45□□□□□ -0.26
USP28-203ENST00000537490 VPS8Q8N3P4 1428 aa13.45□□□□□ -0.26
USP28-203ENST00000537490 MROH2AA6NES4 1674 aa13.44□□□□□ -0.26
USP28-203ENST00000537490 KIF3BO15066 747 aa13.44□□□□□ -0.26
USP28-203ENST00000537490 KANK4Q5T7N3 995 aaPredicted RBP13.44□□□□□ -0.26
USP28-203ENST00000537490 NCKAP5LQ9HCH0 1330 aa13.43□□□□□ -0.26
USP28-203ENST00000537490 CAMSAP2Q08AD1 1489 aa13.43□□□□□ -0.26
USP28-203ENST00000537490 CCDC141Q6ZP82 1450 aa13.43□□□□□ -0.26
USP28-203ENST00000537490 CLTCQ00610 1675 aaKnown RBP13.43□□□□□ -0.26
USP28-203ENST00000537490 ADGBQ8N7X0 1667 aa13.42□□□□□ -0.26
USP28-203ENST00000537490 CAMSAP1Q5T5Y3 1602 aa13.42□□□□□ -0.26
USP28-203ENST00000537490 LRRC9Q6ZRR7 1453 aa13.42□□□□□ -0.26
USP28-203ENST00000537490 TSPY4P0CV99 314 aa13.41□□□□□ -0.26
USP28-203ENST00000537490 TSPY10P0CW01 314 aa13.41□□□□□ -0.26
USP28-203ENST00000537490 FBXO31Q5XUX0 539 aaPredicted RBP13.41□□□□□ -0.26
USP28-203ENST00000537490 LTBP4Q8N2S1 1624 aa13.39□□□□□ -0.27
USP28-203ENST00000537490 PKD2Q13563 968 aa13.38□□□□□ -0.27
USP28-203ENST00000537490 WASHC2CQ9Y4E1 1318 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms