RNA–Protein interactions for RNA: ENST00000533196.1

SMPD1-209, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 3

Gene SMPD1, Length 425 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-209ENST00000533196 POGZQ7Z3K3 1410 aa37.87■■■■□ 3.65
SMPD1-209ENST00000533196 ADAMTSL3P82987 1691 aa37.85■■■■□ 3.65
SMPD1-209ENST00000533196 ARHGAP5Q13017 1502 aa37.84■■■■□ 3.65
SMPD1-209ENST00000533196 ZFYVE16Q7Z3T8 1539 aa37.83■■■■□ 3.65
SMPD1-209ENST00000533196 BCORL1Q5H9F3 1711 aa37.82■■■■□ 3.65
SMPD1-209ENST00000533196 CDC42BPBQ9Y5S2 1711 aa37.79■■■■□ 3.64
SMPD1-209ENST00000533196 ARID4BQ4LE39 1312 aaPredicted RBP37.79■■■■□ 3.64
SMPD1-209ENST00000533196 PREX2Q70Z35 1606 aa37.77■■■■□ 3.64
SMPD1-209ENST00000533196 ZNF518AQ6AHZ1 1483 aa37.74■■■■□ 3.63
SMPD1-209ENST00000533196 YEATS2Q9ULM3 1422 aa37.74■■■■□ 3.63
SMPD1-209ENST00000533196 CEP162Q5TB80 1403 aa37.73■■■■□ 3.63
SMPD1-209ENST00000533196 CDC42BPAQ5VT25 1732 aa37.69■■■■□ 3.62
SMPD1-209ENST00000533196 PTPRMP28827 1452 aa37.69■■■■□ 3.62
SMPD1-209ENST00000533196 KDM5CP41229 1560 aa37.68■■■■□ 3.62
SMPD1-209ENST00000533196 HECW2Q9P2P5 1572 aa37.66■■■■□ 3.62
SMPD1-209ENST00000533196 MADDQ8WXG6 1647 aa37.65■■■■□ 3.62
SMPD1-209ENST00000533196 ATP10AO60312 1499 aa37.64■■■■□ 3.62
SMPD1-209ENST00000533196 ABCC1P33527 1531 aa37.62■■■■□ 3.61
SMPD1-209ENST00000533196 C9orf84Q5VXU9 1444 aa37.6■■■■□ 3.61
SMPD1-209ENST00000533196 SIGLEC1Q9BZZ2 1709 aa37.59■■■■□ 3.61
SMPD1-209ENST00000533196 AFAP1Q8N556 730 aa37.59■■■■□ 3.61
SMPD1-209ENST00000533196 ITSN2Q9NZM3 1697 aa37.58■■■■□ 3.61
SMPD1-209ENST00000533196 MTUS2Q5JR59 1369 aa37.57■■■■□ 3.61
SMPD1-209ENST00000533196 GPATCH8Q9UKJ3 1502 aaKnown RBP37.56■■■■□ 3.6
SMPD1-209ENST00000533196 MLH3Q9UHC1 1453 aa37.55■■■■□ 3.6
SMPD1-209ENST00000533196 ARHGEF12Q9NZN5 1544 aa37.54■■■■□ 3.6
SMPD1-209ENST00000533196 RIMS1Q86UR5 1692 aaKnown RBP37.53■■■■□ 3.6
SMPD1-209ENST00000533196 EHBP1L1Q8N3D4 1523 aa37.51■■■■□ 3.59
SMPD1-209ENST00000533196 TRAPPC8Q9Y2L5 1435 aa37.5■■■■□ 3.59
SMPD1-209ENST00000533196 REREQ9P2R6 1566 aa37.48■■■■□ 3.59
SMPD1-209ENST00000533196 CCNB3Q8WWL7 1395 aa37.48■■■■□ 3.59
SMPD1-209ENST00000533196 DIP2CQ9Y2E4 1556 aa37.47■■■■□ 3.59
SMPD1-209ENST00000533196 MYT1LQ9UL68 1186 aa37.47■■■■□ 3.59
SMPD1-209ENST00000533196 SAMD9LQ8IVG5 1584 aa37.46■■■■□ 3.59
SMPD1-209ENST00000533196 FER1L4A9Z1Z3 1794 aa37.45■■■■□ 3.58
SMPD1-209ENST00000533196 LOC105371045A0A1W2PR82 267 aa37.44■■■■□ 3.58
SMPD1-209ENST00000533196 PLEKHH2Q8IVE3 1493 aa37.44■■■■□ 3.58
SMPD1-209ENST00000533196 CFDP1Q9UEE9 299 aaPredicted RBP37.43■■■■□ 3.58
SMPD1-209ENST00000533196 ZNF777Q9ULD5 760 aaPredicted RBP37.43■■■■□ 3.58
SMPD1-209ENST00000533196 ABCA6Q8N139 1617 aa37.42■■■■□ 3.58
SMPD1-209ENST00000533196 KIAA1107Q9UPP5 1409 aa37.42■■■■□ 3.58
SMPD1-209ENST00000533196 MLECQ14165 292 aa37.4■■■■□ 3.58
SMPD1-209ENST00000533196 SYCP2Q9BX26 1530 aa37.39■■■■□ 3.58
SMPD1-209ENST00000533196 KIDINS220Q9ULH0 1771 aa37.39■■■■□ 3.58
SMPD1-209ENST00000533196 TIAM1Q13009 1591 aa37.36■■■■□ 3.57
SMPD1-209ENST00000533196 VPS8Q8N3P4 1428 aa37.36■■■■□ 3.57
SMPD1-209ENST00000533196 AGLP35573 1532 aa37.35■■■■□ 3.57
SMPD1-209ENST00000533196 HNRNPMP52272 730 aaKnown RBP eCLIP37.3■■■■□ 3.56
SMPD1-209ENST00000533196 SUPT6HQ7KZ85 1726 aaKnown RBP37.3■■■■□ 3.56
SMPD1-209ENST00000533196 SPAG9O60271 1321 aaKnown RBP37.28■■■■□ 3.56
SMPD1-209ENST00000533196 LMTK3Q96Q04 1460 aa37.26■■■■□ 3.56
SMPD1-209ENST00000533196 NCOA2Q15596 1464 aa37.24■■■■□ 3.55
SMPD1-209ENST00000533196 ATP7AQ04656 1500 aa37.22■■■■□ 3.55
SMPD1-209ENST00000533196 INO80Q9ULG1 1556 aaPredicted RBP37.21■■■■□ 3.55
SMPD1-209ENST00000533196 MAP3K1Q13233 1512 aa37.2■■■■□ 3.55
SMPD1-209ENST00000533196 PLPPR3Q6T4P5 718 aa37.18■■■■□ 3.54
SMPD1-209ENST00000533196 MBD5Q9P267 1494 aa37.16■■■■□ 3.54
SMPD1-209ENST00000533196 LRRC9Q6ZRR7 1453 aa37.15■■■■□ 3.54
SMPD1-209ENST00000533196 ZNF644Q9H582 1327 aaPredicted RBP37.14■■■■□ 3.54
SMPD1-209ENST00000533196 SETD1BQ9UPS6 1966 aaKnown RBP37.13■■■■□ 3.53
SMPD1-209ENST00000533196 ESF1Q9H501 851 aaKnown RBP37.11■■■■□ 3.53
SMPD1-209ENST00000533196 CNTLNQ9NXG0 1405 aa37.1■■■■□ 3.53
SMPD1-209ENST00000533196 RTEL1-TNFRSF6BF6WH68 1400 aa37.09■■■■□ 3.53
SMPD1-209ENST00000533196 PREX1Q8TCU6 1659 aa37.09■■■■□ 3.53
SMPD1-209ENST00000533196 PLXNC1O60486 1568 aa37.08■■■■□ 3.53
SMPD1-209ENST00000533196 A2MP01023 1474 aa37.08■■■■□ 3.53
SMPD1-209ENST00000533196 RSPH4AQ5TD94 716 aa37.08■■■■□ 3.53
SMPD1-209ENST00000533196 ADGBQ8N7X0 1667 aa37.08■■■■□ 3.53
SMPD1-209ENST00000533196 CEBPAP49715 358 aaPredicted RBP37.06■■■■□ 3.52
SMPD1-209ENST00000533196 CAMSAP2Q08AD1 1489 aa37.05■■■■□ 3.52
SMPD1-209ENST00000533196 C3P01024 1663 aa37.04■■■■□ 3.52
SMPD1-209ENST00000533196 CCDC141Q6ZP82 1450 aa37.03■■■■□ 3.52
SMPD1-209ENST00000533196 MROH2AA6NES4 1674 aa36.99■■■■□ 3.51
SMPD1-209ENST00000533196 HSPA2P54652 639 aa36.98■■■■□ 3.51
SMPD1-209ENST00000533196 ARHGEF5Q12774 1597 aa36.97■■■■□ 3.51
SMPD1-209ENST00000533196 KANK4Q5T7N3 995 aaPredicted RBP36.96■■■■□ 3.51
SMPD1-209ENST00000533196 UHRF1BP1Q6BDS2 1440 aa36.94■■■■□ 3.5
SMPD1-209ENST00000533196 PPP6R1Q9UPN7 881 aa36.92■■■■□ 3.5
SMPD1-209ENST00000533196 APLP2Q06481 763 aa36.91■■■■□ 3.5
SMPD1-209ENST00000533196 MIA2Q96PC5 1412 aa36.91■■■■□ 3.5
SMPD1-209ENST00000533196 DHX29Q7Z478 1369 aaKnown RBP36.91■■■■□ 3.5
SMPD1-209ENST00000533196 MYOM3Q5VTT5 1437 aa36.88■■■■□ 3.49
SMPD1-209ENST00000533196 TSPY4P0CV99 314 aa36.86■■■■□ 3.49
SMPD1-209ENST00000533196 TSPY10P0CW01 314 aa36.86■■■■□ 3.49
SMPD1-209ENST00000533196 NPATQ14207 1427 aa36.85■■■■□ 3.49
SMPD1-209ENST00000533196 ILDR1Q86SU0 546 aaPredicted RBP36.85■■■■□ 3.49
SMPD1-209ENST00000533196 ZMYM3Q14202 1370 aa36.85■■■■□ 3.49
SMPD1-209ENST00000533196 CLTCQ00610 1675 aaKnown RBP36.84■■■■□ 3.49
SMPD1-209ENST00000533196 GGT6Q6P531 493 aa36.84■■■■□ 3.49
SMPD1-209ENST00000533196 MAST1Q9Y2H9 1570 aa36.79■■■■□ 3.48
SMPD1-209ENST00000533196 FAM135AQ9P2D6 1515 aa36.75■■■■□ 3.47
SMPD1-209ENST00000533196 KIF3BO15066 747 aa36.72■■■■□ 3.47
SMPD1-209ENST00000533196 DMRT2Q9Y5R5 561 aa36.72■■■■□ 3.47
SMPD1-209ENST00000533196 STRCQ7RTU9 1775 aa36.71■■■■□ 3.47
SMPD1-209ENST00000533196 PTPRKQ15262 1439 aa36.68■■■■□ 3.46
SMPD1-209ENST00000533196 PTPN23Q9H3S7 1636 aa36.64■■■■□ 3.46
SMPD1-209ENST00000533196 KDM5DQ9BY66 1539 aa36.64■■■■□ 3.46
SMPD1-209ENST00000533196 FBXO41Q8TF61 875 aa36.62■■■■□ 3.45
SMPD1-209ENST00000533196 ZNF142P52746 1687 aaPredicted RBP36.61■■■■□ 3.45
SMPD1-209ENST00000533196 MYO3AQ8NEV4 1616 aa36.6■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms