RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 SAMD9Q5K651 1589 aa19.1■□□□□ 0.65
TRAPPC4-213ENST00000533149 SIGLEC1Q9BZZ2 1709 aa19.1■□□□□ 0.65
TRAPPC4-213ENST00000533149 ARHGEF12Q9NZN5 1544 aa19.07■□□□□ 0.64
TRAPPC4-213ENST00000533149 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.06■□□□□ 0.64
TRAPPC4-213ENST00000533149 HECW1Q76N89 1606 aa19.06■□□□□ 0.64
TRAPPC4-213ENST00000533149 UHRF1BP1Q6BDS2 1440 aa19.04■□□□□ 0.64
TRAPPC4-213ENST00000533149 CEBPAP49715 358 aaPredicted RBP19.04■□□□□ 0.64
TRAPPC4-213ENST00000533149 STRCQ7RTU9 1775 aa19.04■□□□□ 0.64
TRAPPC4-213ENST00000533149 ATP10AO60312 1499 aa19.04■□□□□ 0.64
TRAPPC4-213ENST00000533149 PTPRTO14522 1441 aa19.03■□□□□ 0.64
TRAPPC4-213ENST00000533149 C9orf84Q5VXU9 1444 aa19.03■□□□□ 0.64
TRAPPC4-213ENST00000533149 SCAPERQ9BY12 1400 aa19.02■□□□□ 0.64
TRAPPC4-213ENST00000533149 IQSEC2Q5JU85 1478 aa18.99■□□□□ 0.63
TRAPPC4-213ENST00000533149 SETD1BQ9UPS6 1966 aaKnown RBP18.97■□□□□ 0.63
TRAPPC4-213ENST00000533149 PLCH2O75038 1416 aa18.97■□□□□ 0.63
TRAPPC4-213ENST00000533149 LTBP4Q8N2S1 1624 aa18.94■□□□□ 0.62
TRAPPC4-213ENST00000533149 EFCAB2Q5VUJ9 269 aa18.93■□□□□ 0.62
TRAPPC4-213ENST00000533149 RANGAP1P46060 587 aaPredicted RBP18.92■□□□□ 0.62
TRAPPC4-213ENST00000533149 CSRNP3Q8WYN3 585 aa18.92■□□□□ 0.62
TRAPPC4-213ENST00000533149 SENP3Q9H4L4 574 aaPredicted RBP18.9■□□□□ 0.62
TRAPPC4-213ENST00000533149 ZNF518AQ6AHZ1 1483 aa18.89■□□□□ 0.61
TRAPPC4-213ENST00000533149 ESF1Q9H501 851 aaKnown RBP18.89■□□□□ 0.61
TRAPPC4-213ENST00000533149 TRAPPC8Q9Y2L5 1435 aa18.86■□□□□ 0.61
TRAPPC4-213ENST00000533149 MYT1LQ9UL68 1186 aa18.86■□□□□ 0.61
TRAPPC4-213ENST00000533149 NCOA1Q15788 1441 aa18.85■□□□□ 0.61
TRAPPC4-213ENST00000533149 C3P01024 1663 aa18.83■□□□□ 0.61
TRAPPC4-213ENST00000533149 AFAP1Q8N556 730 aa18.83■□□□□ 0.61
TRAPPC4-213ENST00000533149 REREQ9P2R6 1566 aa18.83■□□□□ 0.6
TRAPPC4-213ENST00000533149 CDK13Q14004 1512 aaKnown RBP18.83■□□□□ 0.6
TRAPPC4-213ENST00000533149 UBAP1LF5GYI3 381 aa18.82■□□□□ 0.6
TRAPPC4-213ENST00000533149 KDM5CP41229 1560 aa18.82■□□□□ 0.6
TRAPPC4-213ENST00000533149 MYO5CQ9NQX4 1742 aa18.82■□□□□ 0.6
TRAPPC4-213ENST00000533149 CDK11AQ9UQ88 783 aaPredicted RBP18.81■□□□□ 0.6
TRAPPC4-213ENST00000533149 DIP2CQ9Y2E4 1556 aa18.79■□□□□ 0.6
TRAPPC4-213ENST00000533149 CNTLNQ9NXG0 1405 aa18.79■□□□□ 0.6
TRAPPC4-213ENST00000533149 AGLP35573 1532 aa18.78■□□□□ 0.6
TRAPPC4-213ENST00000533149 ARHGAP5Q13017 1502 aa18.77■□□□□ 0.6
TRAPPC4-213ENST00000533149 MLH3Q9UHC1 1453 aa18.77■□□□□ 0.59
TRAPPC4-213ENST00000533149 CAMSAP1Q5T5Y3 1602 aa18.75■□□□□ 0.59
TRAPPC4-213ENST00000533149 ATP1B4Q9UN42 357 aaPredicted RBP18.74■□□□□ 0.59
TRAPPC4-213ENST00000533149 NPATQ14207 1427 aa18.74■□□□□ 0.59
TRAPPC4-213ENST00000533149 ZNF335Q9H4Z2 1342 aaPredicted RBP18.74■□□□□ 0.59
TRAPPC4-213ENST00000533149 EEA1Q15075 1411 aa18.73■□□□□ 0.59
TRAPPC4-213ENST00000533149 KIF14Q15058 1648 aa18.72■□□□□ 0.59
TRAPPC4-213ENST00000533149 ABCA6Q8N139 1617 aa18.72■□□□□ 0.59
TRAPPC4-213ENST00000533149 PKD2Q13563 968 aa18.72■□□□□ 0.59
TRAPPC4-213ENST00000533149 NCKAP5LQ9HCH0 1330 aa18.71■□□□□ 0.59
TRAPPC4-213ENST00000533149 CLIP1P30622 1438 aa18.7■□□□□ 0.58
TRAPPC4-213ENST00000533149 TROQ12816 1431 aaPredicted RBP18.69■□□□□ 0.58
TRAPPC4-213ENST00000533149 FMN1Q68DA7 1419 aa18.69■□□□□ 0.58
TRAPPC4-213ENST00000533149 ZMYM3Q14202 1370 aa18.67■□□□□ 0.58
TRAPPC4-213ENST00000533149 PLA2R1Q13018 1463 aa18.67■□□□□ 0.58
TRAPPC4-213ENST00000533149 MED1Q15648 1581 aaPredicted RBP18.66■□□□□ 0.58
TRAPPC4-213ENST00000533149 MROH2AA6NES4 1674 aa18.66■□□□□ 0.58
TRAPPC4-213ENST00000533149 HSPA1LP34931 641 aa18.65■□□□□ 0.58
TRAPPC4-213ENST00000533149 PHF23Q9BUL5 403 aaPredicted RBP18.64■□□□□ 0.57
TRAPPC4-213ENST00000533149 SCAF1Q9H7N4 1312 aaKnown RBP18.63■□□□□ 0.57
TRAPPC4-213ENST00000533149 TOM1O60784 492 aa18.62■□□□□ 0.57
TRAPPC4-213ENST00000533149 PPP6R1Q9UPN7 881 aa18.62■□□□□ 0.57
TRAPPC4-213ENST00000533149 ABCC1P33527 1531 aa18.62■□□□□ 0.57
TRAPPC4-213ENST00000533149 TCOF1Q13428 1488 aaKnown RBP18.62■□□□□ 0.57
TRAPPC4-213ENST00000533149 CDC42BPBQ9Y5S2 1711 aa18.61■□□□□ 0.57
TRAPPC4-213ENST00000533149 PIP4K2BP78356 416 aa18.6■□□□□ 0.57
TRAPPC4-213ENST00000533149 KIDINS220Q9ULH0 1771 aa18.6■□□□□ 0.57
TRAPPC4-213ENST00000533149 ZNF142P52746 1687 aaPredicted RBP18.59■□□□□ 0.57
TRAPPC4-213ENST00000533149 ITSN2Q9NZM3 1697 aa18.58■□□□□ 0.57
TRAPPC4-213ENST00000533149 CEP170BQ9Y4F5 1589 aaPredicted RBP18.58■□□□□ 0.56
TRAPPC4-213ENST00000533149 PREX2Q70Z35 1606 aa18.57■□□□□ 0.56
TRAPPC4-213ENST00000533149 MYO3AQ8NEV4 1616 aa18.57■□□□□ 0.56
TRAPPC4-213ENST00000533149 SUPT6HQ7KZ85 1726 aaKnown RBP18.56■□□□□ 0.56
TRAPPC4-213ENST00000533149 PTPRKQ15262 1439 aa18.55■□□□□ 0.56
TRAPPC4-213ENST00000533149 CPS1P31327 1500 aa18.54■□□□□ 0.56
TRAPPC4-213ENST00000533149 ARHGAP35Q9NRY4 1499 aa18.52■□□□□ 0.56
TRAPPC4-213ENST00000533149 SPAG9O60271 1321 aaKnown RBP18.52■□□□□ 0.56
TRAPPC4-213ENST00000533149 CLTCQ00610 1675 aaKnown RBP18.52■□□□□ 0.55
TRAPPC4-213ENST00000533149 SAMD9LQ8IVG5 1584 aa18.52■□□□□ 0.55
TRAPPC4-213ENST00000533149 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
TRAPPC4-213ENST00000533149 GGT6Q6P531 493 aa18.49■□□□□ 0.55
TRAPPC4-213ENST00000533149 A2ML1A8K2U0 1454 aa18.48■□□□□ 0.55
TRAPPC4-213ENST00000533149 SHANK2Q9UPX8 1470 aa18.48■□□□□ 0.55
TRAPPC4-213ENST00000533149 ZNF777Q9ULD5 760 aaPredicted RBP18.48■□□□□ 0.55
TRAPPC4-213ENST00000533149 A2MP01023 1474 aa18.47■□□□□ 0.55
TRAPPC4-213ENST00000533149 CCDC18Q5T9S5 1454 aa18.46■□□□□ 0.55
TRAPPC4-213ENST00000533149 LRRIQ1Q96JM4 1722 aa18.46■□□□□ 0.55
TRAPPC4-213ENST00000533149 PLXNC1O60486 1568 aa18.45■□□□□ 0.54
TRAPPC4-213ENST00000533149 DNMT1P26358 1616 aaKnown RBP18.44■□□□□ 0.54
TRAPPC4-213ENST00000533149 CDC42BPAQ5VT25 1732 aa18.44■□□□□ 0.54
TRAPPC4-213ENST00000533149 ATP7AQ04656 1500 aa18.44■□□□□ 0.54
TRAPPC4-213ENST00000533149 HNRNPMP52272 730 aaKnown RBP eCLIP18.44■□□□□ 0.54
TRAPPC4-213ENST00000533149 SYCP2Q9BX26 1530 aa18.43■□□□□ 0.54
TRAPPC4-213ENST00000533149 KIAA1107Q9UPP5 1409 aa18.42■□□□□ 0.54
TRAPPC4-213ENST00000533149 POLR1AO95602 1720 aaPredicted RBP18.41■□□□□ 0.54
TRAPPC4-213ENST00000533149 ANKLE2Q86XL3 938 aa18.41■□□□□ 0.54
TRAPPC4-213ENST00000533149 NEURL4Q96JN8 1562 aa18.4■□□□□ 0.54
TRAPPC4-213ENST00000533149 PLEKHH2Q8IVE3 1493 aa18.4■□□□□ 0.54
TRAPPC4-213ENST00000533149 EHMT2Q96KQ7 1210 aa18.4■□□□□ 0.54
TRAPPC4-213ENST00000533149 INO80Q9ULG1 1556 aaPredicted RBP18.39■□□□□ 0.53
TRAPPC4-213ENST00000533149 CASKIN1Q8WXD9 1431 aa18.39■□□□□ 0.53
TRAPPC4-213ENST00000533149 GPATCH8Q9UKJ3 1502 aaKnown RBP18.38■□□□□ 0.53
TRAPPC4-213ENST00000533149 TNRQ92752 1358 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms