RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 EEA1Q15075 1411 aa17.61■□□□□ 0.41
CPSF1-203ENST00000527916 HECW1Q76N89 1606 aa17.6■□□□□ 0.41
CPSF1-203ENST00000527916 SIGLEC1Q9BZZ2 1709 aa17.59■□□□□ 0.41
CPSF1-203ENST00000527916 SCAPERQ9BY12 1400 aa17.59■□□□□ 0.41
CPSF1-203ENST00000527916 PREX1Q8TCU6 1659 aa17.58■□□□□ 0.41
CPSF1-203ENST00000527916 ILDR2Q71H61 639 aa17.58■□□□□ 0.4
CPSF1-203ENST00000527916 ATP10AO60312 1499 aa17.57■□□□□ 0.4
CPSF1-203ENST00000527916 ARHGEF12Q9NZN5 1544 aa17.57■□□□□ 0.4
CPSF1-203ENST00000527916 C9orf84Q5VXU9 1444 aa17.56■□□□□ 0.4
CPSF1-203ENST00000527916 PLCH2O75038 1416 aa17.55■□□□□ 0.4
CPSF1-203ENST00000527916 SETD1BQ9UPS6 1966 aaKnown RBP17.55■□□□□ 0.4
CPSF1-203ENST00000527916 CEBPAP49715 358 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-203ENST00000527916 EFCAB2Q5VUJ9 269 aa17.54■□□□□ 0.4
CPSF1-203ENST00000527916 UHRF1BP1Q6BDS2 1440 aa17.53■□□□□ 0.4
CPSF1-203ENST00000527916 STRCQ7RTU9 1775 aa17.5■□□□□ 0.39
CPSF1-203ENST00000527916 CDK11AQ9UQ88 783 aaPredicted RBP17.49■□□□□ 0.39
CPSF1-203ENST00000527916 CDK13Q14004 1512 aaKnown RBP17.48■□□□□ 0.39
CPSF1-203ENST00000527916 MYT1LQ9UL68 1186 aa17.48■□□□□ 0.39
CPSF1-203ENST00000527916 ZNF518AQ6AHZ1 1483 aa17.48■□□□□ 0.39
CPSF1-203ENST00000527916 PTPRTO14522 1441 aa17.47■□□□□ 0.39
CPSF1-203ENST00000527916 SPATA31D1Q6ZQQ2 1576 aa17.46■□□□□ 0.39
CPSF1-203ENST00000527916 ESF1Q9H501 851 aaKnown RBP17.46■□□□□ 0.39
CPSF1-203ENST00000527916 ATP1B4Q9UN42 357 aaPredicted RBP17.46■□□□□ 0.39
CPSF1-203ENST00000527916 MYO5CQ9NQX4 1742 aa17.46■□□□□ 0.39
CPSF1-203ENST00000527916 CHIC1Q5VXU3 224 aa17.44■□□□□ 0.38
CPSF1-203ENST00000527916 AFAP1Q8N556 730 aa17.43■□□□□ 0.38
CPSF1-203ENST00000527916 ARHGAP5Q13017 1502 aa17.41■□□□□ 0.38
CPSF1-203ENST00000527916 FMN1Q68DA7 1419 aa17.4■□□□□ 0.38
CPSF1-203ENST00000527916 IQSEC2Q5JU85 1478 aa17.4■□□□□ 0.38
CPSF1-203ENST00000527916 KDM5CP41229 1560 aa17.4■□□□□ 0.38
CPSF1-203ENST00000527916 KIF14Q15058 1648 aa17.39■□□□□ 0.37
CPSF1-203ENST00000527916 TRAPPC8Q9Y2L5 1435 aa17.38■□□□□ 0.37
CPSF1-203ENST00000527916 REREQ9P2R6 1566 aa17.38■□□□□ 0.37
CPSF1-203ENST00000527916 CLIP1P30622 1438 aa17.38■□□□□ 0.37
CPSF1-203ENST00000527916 C3P01024 1663 aa17.37■□□□□ 0.37
CPSF1-203ENST00000527916 DIP2CQ9Y2E4 1556 aa17.36■□□□□ 0.37
CPSF1-203ENST00000527916 TROQ12816 1431 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-203ENST00000527916 MLH3Q9UHC1 1453 aa17.36■□□□□ 0.37
CPSF1-203ENST00000527916 LTBP4Q8N2S1 1624 aa17.36■□□□□ 0.37
CPSF1-203ENST00000527916 CNTLNQ9NXG0 1405 aa17.35■□□□□ 0.37
CPSF1-203ENST00000527916 AGLP35573 1532 aa17.34■□□□□ 0.37
CPSF1-203ENST00000527916 NCOA1Q15788 1441 aa17.34■□□□□ 0.37
CPSF1-203ENST00000527916 UBTFP17480 764 aaKnown RBP17.32■□□□□ 0.36
CPSF1-203ENST00000527916 ABCA6Q8N139 1617 aa17.32■□□□□ 0.36
CPSF1-203ENST00000527916 NPATQ14207 1427 aa17.29■□□□□ 0.36
CPSF1-203ENST00000527916 UBAP1LF5GYI3 381 aa17.28■□□□□ 0.36
CPSF1-203ENST00000527916 CAMSAP1Q5T5Y3 1602 aa17.27■□□□□ 0.36
CPSF1-203ENST00000527916 CDC42BPBQ9Y5S2 1711 aa17.27■□□□□ 0.35
CPSF1-203ENST00000527916 ARHGAP35Q9NRY4 1499 aa17.26■□□□□ 0.35
CPSF1-203ENST00000527916 ABCC1P33527 1531 aa17.25■□□□□ 0.35
CPSF1-203ENST00000527916 PKD2Q13563 968 aa17.24■□□□□ 0.35
CPSF1-203ENST00000527916 EHMT2Q96KQ7 1210 aa17.24■□□□□ 0.35
CPSF1-203ENST00000527916 ZNF335Q9H4Z2 1342 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-203ENST00000527916 NCKAP5LQ9HCH0 1330 aa17.23■□□□□ 0.35
CPSF1-203ENST00000527916 PREX2Q70Z35 1606 aa17.23■□□□□ 0.35
CPSF1-203ENST00000527916 ZMYM3Q14202 1370 aa17.23■□□□□ 0.35
CPSF1-203ENST00000527916 MROH2AA6NES4 1674 aa17.23■□□□□ 0.35
CPSF1-203ENST00000527916 ITSN2Q9NZM3 1697 aa17.23■□□□□ 0.35
CPSF1-203ENST00000527916 KIDINS220Q9ULH0 1771 aa17.23■□□□□ 0.35
CPSF1-203ENST00000527916 SPAG9O60271 1321 aaKnown RBP17.19■□□□□ 0.34
CPSF1-203ENST00000527916 PLA2R1Q13018 1463 aa17.18■□□□□ 0.34
CPSF1-203ENST00000527916 CCDC18Q5T9S5 1454 aa17.18■□□□□ 0.34
CPSF1-203ENST00000527916 LRRIQ1Q96JM4 1722 aa17.17■□□□□ 0.34
CPSF1-203ENST00000527916 ZNF777Q9ULD5 760 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-203ENST00000527916 SAMD9LQ8IVG5 1584 aa17.16■□□□□ 0.34
CPSF1-203ENST00000527916 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
CPSF1-203ENST00000527916 SUPT6HQ7KZ85 1726 aaKnown RBP17.15■□□□□ 0.34
CPSF1-203ENST00000527916 ZNF142P52746 1687 aaPredicted RBP17.14■□□□□ 0.33
CPSF1-203ENST00000527916 TCOF1Q13428 1488 aaKnown RBP17.14■□□□□ 0.33
CPSF1-203ENST00000527916 CDC42BPAQ5VT25 1732 aa17.14■□□□□ 0.33
CPSF1-203ENST00000527916 SCAF1Q9H7N4 1312 aaKnown RBP17.14■□□□□ 0.33
CPSF1-203ENST00000527916 CEP170BQ9Y4F5 1589 aaPredicted RBP17.14■□□□□ 0.33
CPSF1-203ENST00000527916 CASKIN1Q8WXD9 1431 aa17.13■□□□□ 0.33
CPSF1-203ENST00000527916 MYO3AQ8NEV4 1616 aa17.13■□□□□ 0.33
CPSF1-203ENST00000527916 GGT6Q6P531 493 aa17.12■□□□□ 0.33
CPSF1-203ENST00000527916 CLTCQ00610 1675 aaKnown RBP17.12■□□□□ 0.33
CPSF1-203ENST00000527916 PTPRKQ15262 1439 aa17.12■□□□□ 0.33
CPSF1-203ENST00000527916 TOM1O60784 492 aa17.11■□□□□ 0.33
CPSF1-203ENST00000527916 HNRNPMP52272 730 aaKnown RBP eCLIP17.11■□□□□ 0.33
CPSF1-203ENST00000527916 SYCP2Q9BX26 1530 aa17.11■□□□□ 0.33
CPSF1-203ENST00000527916 HSPA1LP34931 641 aa17.1■□□□□ 0.33
CPSF1-203ENST00000527916 PIP4K2BP78356 416 aa17.1■□□□□ 0.33
CPSF1-203ENST00000527916 A2MP01023 1474 aa17.1■□□□□ 0.33
CPSF1-203ENST00000527916 PLEKHH2Q8IVE3 1493 aa17.09■□□□□ 0.33
CPSF1-203ENST00000527916 ATP7AQ04656 1500 aa17.09■□□□□ 0.33
CPSF1-203ENST00000527916 KIAA1107Q9UPP5 1409 aa17.08■□□□□ 0.32
CPSF1-203ENST00000527916 CFDP1Q9UEE9 299 aaPredicted RBP17.07■□□□□ 0.32
CPSF1-203ENST00000527916 PLXNC1O60486 1568 aa17.06■□□□□ 0.32
CPSF1-203ENST00000527916 GPATCH8Q9UKJ3 1502 aaKnown RBP17.06■□□□□ 0.32
CPSF1-203ENST00000527916 MED1Q15648 1581 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-203ENST00000527916 A2ML1A8K2U0 1454 aa17.05■□□□□ 0.32
CPSF1-203ENST00000527916 PHF23Q9BUL5 403 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-203ENST00000527916 CPS1P31327 1500 aa17.05■□□□□ 0.32
CPSF1-203ENST00000527916 INO80Q9ULG1 1556 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-203ENST00000527916 FYCO1Q9BQS8 1478 aa17.04■□□□□ 0.32
CPSF1-203ENST00000527916 CCNB3Q8WWL7 1395 aa17.02■□□□□ 0.32
CPSF1-203ENST00000527916 DNMT1P26358 1616 aaKnown RBP17.02■□□□□ 0.31
CPSF1-203ENST00000527916 SHANK2Q9UPX8 1470 aa17.01■□□□□ 0.31
CPSF1-203ENST00000527916 ADGBQ8N7X0 1667 aa17.01■□□□□ 0.31
CPSF1-203ENST00000527916 ANKLE2Q86XL3 938 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms