RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 MYO5CQ9NQX4 1742 aa25.79■■□□□ 1.72
LSM1-205ENST00000523511 LRRIQ1Q96JM4 1722 aa25.77■■□□□ 1.72
LSM1-205ENST00000523511 POGZQ7Z3K3 1410 aa25.75■■□□□ 1.71
LSM1-205ENST00000523511 CCNB3Q8WWL7 1395 aa25.74■■□□□ 1.71
LSM1-205ENST00000523511 CFDP1Q9UEE9 299 aaPredicted RBP25.74■■□□□ 1.71
LSM1-205ENST00000523511 ZNF777Q9ULD5 760 aaPredicted RBP25.74■■□□□ 1.71
LSM1-205ENST00000523511 AFAP1Q8N556 730 aa25.72■■□□□ 1.71
LSM1-205ENST00000523511 FRMPD1Q5SYB0 1578 aa25.72■■□□□ 1.71
LSM1-205ENST00000523511 ZNF518AQ6AHZ1 1483 aa25.72■■□□□ 1.71
LSM1-205ENST00000523511 VPS8Q8N3P4 1428 aa25.71■■□□□ 1.71
LSM1-205ENST00000523511 APLP2Q06481 763 aa25.69■■□□□ 1.7
LSM1-205ENST00000523511 RICTORQ6R327 1708 aa25.68■■□□□ 1.7
LSM1-205ENST00000523511 ZMYM4Q5VZL5 1548 aa25.68■■□□□ 1.7
LSM1-205ENST00000523511 ZFYVE16Q7Z3T8 1539 aa25.68■■□□□ 1.7
LSM1-205ENST00000523511 GPATCH8Q9UKJ3 1502 aaKnown RBP25.66■■□□□ 1.7
LSM1-205ENST00000523511 ARHGEF40Q8TER5 1519 aa25.64■■□□□ 1.7
LSM1-205ENST00000523511 EHBP1L1Q8N3D4 1523 aa25.63■■□□□ 1.69
LSM1-205ENST00000523511 PREX2Q70Z35 1606 aa25.63■■□□□ 1.69
LSM1-205ENST00000523511 ATP10AO60312 1499 aa25.63■■□□□ 1.69
LSM1-205ENST00000523511 YEATS2Q9ULM3 1422 aa25.63■■□□□ 1.69
LSM1-205ENST00000523511 PLEKHH2Q8IVE3 1493 aa25.61■■□□□ 1.69
LSM1-205ENST00000523511 CDC42BPBQ9Y5S2 1711 aa25.6■■□□□ 1.69
LSM1-205ENST00000523511 HNRNPMP52272 730 aaKnown RBP eCLIP25.59■■□□□ 1.69
LSM1-205ENST00000523511 KIAA1107Q9UPP5 1409 aa25.58■■□□□ 1.69
LSM1-205ENST00000523511 C9orf84Q5VXU9 1444 aa25.57■■□□□ 1.68
LSM1-205ENST00000523511 MLH3Q9UHC1 1453 aa25.57■■□□□ 1.68
LSM1-205ENST00000523511 MLECQ14165 292 aa25.56■■□□□ 1.68
LSM1-205ENST00000523511 ABCC1P33527 1531 aa25.56■■□□□ 1.68
LSM1-205ENST00000523511 SPAG9O60271 1321 aaKnown RBP25.56■■□□□ 1.68
LSM1-205ENST00000523511 TRAPPC8Q9Y2L5 1435 aa25.55■■□□□ 1.68
LSM1-205ENST00000523511 CDC42BPAQ5VT25 1732 aa25.54■■□□□ 1.68
LSM1-205ENST00000523511 RSPH4AQ5TD94 716 aa25.54■■□□□ 1.68
LSM1-205ENST00000523511 KDM5CP41229 1560 aa25.53■■□□□ 1.68
LSM1-205ENST00000523511 MAP3K1Q13233 1512 aa25.53■■□□□ 1.68
LSM1-205ENST00000523511 ARHGEF12Q9NZN5 1544 aa25.53■■□□□ 1.68
LSM1-205ENST00000523511 TIAM1Q13009 1591 aa25.52■■□□□ 1.68
LSM1-205ENST00000523511 NCOA2Q15596 1464 aa25.5■■□□□ 1.67
LSM1-205ENST00000523511 LRRC9Q6ZRR7 1453 aa25.5■■□□□ 1.67
LSM1-205ENST00000523511 HECW2Q9P2P5 1572 aa25.49■■□□□ 1.67
LSM1-205ENST00000523511 PTPRMP28827 1452 aa25.49■■□□□ 1.67
LSM1-205ENST00000523511 ESF1Q9H501 851 aaKnown RBP25.49■■□□□ 1.67
LSM1-205ENST00000523511 BCORL1Q5H9F3 1711 aa25.49■■□□□ 1.67
LSM1-205ENST00000523511 ADAMTSL3P82987 1691 aa25.48■■□□□ 1.67
LSM1-205ENST00000523511 SUPT6HQ7KZ85 1726 aaKnown RBP25.47■■□□□ 1.67
LSM1-205ENST00000523511 SAMD9LQ8IVG5 1584 aa25.47■■□□□ 1.67
LSM1-205ENST00000523511 ZNF644Q9H582 1327 aaPredicted RBP25.45■■□□□ 1.66
LSM1-205ENST00000523511 KANK4Q5T7N3 995 aaPredicted RBP25.45■■□□□ 1.66
LSM1-205ENST00000523511 SYCP2Q9BX26 1530 aa25.45■■□□□ 1.66
LSM1-205ENST00000523511 ITSN2Q9NZM3 1697 aa25.44■■□□□ 1.66
LSM1-205ENST00000523511 TSPY4P0CV99 314 aa25.43■■□□□ 1.66
LSM1-205ENST00000523511 TSPY10P0CW01 314 aa25.43■■□□□ 1.66
LSM1-205ENST00000523511 PLPPR3Q6T4P5 718 aa25.4■■□□□ 1.66
LSM1-205ENST00000523511 REREQ9P2R6 1566 aa25.39■■□□□ 1.65
LSM1-205ENST00000523511 DIP2CQ9Y2E4 1556 aa25.39■■□□□ 1.65
LSM1-205ENST00000523511 MADDQ8WXG6 1647 aa25.38■■□□□ 1.65
LSM1-205ENST00000523511 RTEL1-TNFRSF6BF6WH68 1400 aa25.36■■□□□ 1.65
LSM1-205ENST00000523511 MBD5Q9P267 1494 aa25.35■■□□□ 1.65
LSM1-205ENST00000523511 AGLP35573 1532 aa25.35■■□□□ 1.65
LSM1-205ENST00000523511 MIA2Q96PC5 1412 aa25.34■■□□□ 1.65
LSM1-205ENST00000523511 ATP7AQ04656 1500 aa25.32■■□□□ 1.64
LSM1-205ENST00000523511 ABCA6Q8N139 1617 aa25.32■■□□□ 1.64
LSM1-205ENST00000523511 CAMSAP2Q08AD1 1489 aa25.32■■□□□ 1.64
LSM1-205ENST00000523511 KIDINS220Q9ULH0 1771 aa25.31■■□□□ 1.64
LSM1-205ENST00000523511 CCDC141Q6ZP82 1450 aa25.31■■□□□ 1.64
LSM1-205ENST00000523511 MYOM3Q5VTT5 1437 aa25.3■■□□□ 1.64
LSM1-205ENST00000523511 A2MP01023 1474 aa25.3■■□□□ 1.64
LSM1-205ENST00000523511 PPP6R1Q9UPN7 881 aa25.3■■□□□ 1.64
LSM1-205ENST00000523511 RIMS1Q86UR5 1692 aaKnown RBP25.29■■□□□ 1.64
LSM1-205ENST00000523511 CNTLNQ9NXG0 1405 aa25.27■■□□□ 1.64
LSM1-205ENST00000523511 SIGLEC1Q9BZZ2 1709 aa25.26■■□□□ 1.63
LSM1-205ENST00000523511 GGT6Q6P531 493 aa25.26■■□□□ 1.63
LSM1-205ENST00000523511 DHX29Q7Z478 1369 aaKnown RBP25.25■■□□□ 1.63
LSM1-205ENST00000523511 CEBPAP49715 358 aaPredicted RBP25.24■■□□□ 1.63
LSM1-205ENST00000523511 INO80Q9ULG1 1556 aaPredicted RBP25.23■■□□□ 1.63
LSM1-205ENST00000523511 FER1L4A9Z1Z3 1794 aa25.23■■□□□ 1.63
LSM1-205ENST00000523511 ARHGEF5Q12774 1597 aa25.2■■□□□ 1.62
LSM1-205ENST00000523511 KIF3BO15066 747 aa25.19■■□□□ 1.62
LSM1-205ENST00000523511 ADGBQ8N7X0 1667 aa25.15■■□□□ 1.62
LSM1-205ENST00000523511 ZMYM3Q14202 1370 aa25.15■■□□□ 1.62
LSM1-205ENST00000523511 PLXNC1O60486 1568 aa25.14■■□□□ 1.61
LSM1-205ENST00000523511 LMTK3Q96Q04 1460 aa25.13■■□□□ 1.61
LSM1-205ENST00000523511 FGD6Q6ZV73 1430 aa25.12■■□□□ 1.61
LSM1-205ENST00000523511 UHRF1BP1Q6BDS2 1440 aa25.11■■□□□ 1.61
LSM1-205ENST00000523511 HSPA2P54652 639 aa25.1■■□□□ 1.61
LSM1-205ENST00000523511 WASHC2CQ9Y4E1 1318 aa25.1■■□□□ 1.61
LSM1-205ENST00000523511 FAM50AQ14320 339 aaKnown RBP25.07■■□□□ 1.6
LSM1-205ENST00000523511 MAST1Q9Y2H9 1570 aa25.05■■□□□ 1.6
LSM1-205ENST00000523511 PTPN23Q9H3S7 1636 aa25.05■■□□□ 1.6
LSM1-205ENST00000523511 NPATQ14207 1427 aa25.05■■□□□ 1.6
LSM1-205ENST00000523511 DMRT2Q9Y5R5 561 aa25.05■■□□□ 1.6
LSM1-205ENST00000523511 ABCC5O15440 1437 aa25.03■■□□□ 1.6
LSM1-205ENST00000523511 TCOF1Q13428 1488 aaKnown RBP25.03■■□□□ 1.6
LSM1-205ENST00000523511 RRP7BPQ9NSQ0 103 aa25.03■■□□□ 1.6
LSM1-205ENST00000523511 ANKRD30AQ9BXX3 1397 aa25.01■■□□□ 1.59
LSM1-205ENST00000523511 DAPK1P53355 1430 aa25.01■■□□□ 1.59
LSM1-205ENST00000523511 SHANK2Q9UPX8 1470 aa25.01■■□□□ 1.59
LSM1-205ENST00000523511 MROH2AA6NES4 1674 aa24.99■■□□□ 1.59
LSM1-205ENST00000523511 C3P01024 1663 aa24.99■■□□□ 1.59
LSM1-205ENST00000523511 KIF15Q9NS87 1388 aa24.99■■□□□ 1.59
LSM1-205ENST00000523511 CHIC2Q9UKJ5 165 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms