RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ZFYVE16Q7Z3T8 1539 aa28.38■■■□□ 2.13
DDX41-217ENST00000515562 BCORL1Q5H9F3 1711 aa28.38■■■□□ 2.13
DDX41-217ENST00000515562 SCAPERQ9BY12 1400 aa28.38■■■□□ 2.13
DDX41-217ENST00000515562 EFCAB2Q5VUJ9 269 aa28.37■■■□□ 2.13
DDX41-217ENST00000515562 ARHGAP5Q13017 1502 aa28.36■■■□□ 2.13
DDX41-217ENST00000515562 HECW2Q9P2P5 1572 aa28.34■■■□□ 2.13
DDX41-217ENST00000515562 ARID4BQ4LE39 1312 aaPredicted RBP28.33■■■□□ 2.13
DDX41-217ENST00000515562 PREX2Q70Z35 1606 aa28.31■■■□□ 2.12
DDX41-217ENST00000515562 YEATS2Q9ULM3 1422 aa28.3■■■□□ 2.12
DDX41-217ENST00000515562 PTPRMP28827 1452 aa28.29■■■□□ 2.12
DDX41-217ENST00000515562 MADDQ8WXG6 1647 aa28.29■■■□□ 2.12
DDX41-217ENST00000515562 ZNF518AQ6AHZ1 1483 aa28.28■■■□□ 2.12
DDX41-217ENST00000515562 CDC42BPBQ9Y5S2 1711 aa28.28■■■□□ 2.12
DDX41-217ENST00000515562 KDM5CP41229 1560 aa28.24■■■□□ 2.11
DDX41-217ENST00000515562 SIGLEC1Q9BZZ2 1709 aa28.22■■■□□ 2.11
DDX41-217ENST00000515562 CDC42BPAQ5VT25 1732 aa28.21■■■□□ 2.11
DDX41-217ENST00000515562 ABCC1P33527 1531 aa28.2■■■□□ 2.1
DDX41-217ENST00000515562 RIMS1Q86UR5 1692 aaKnown RBP28.19■■■□□ 2.1
DDX41-217ENST00000515562 CEP162Q5TB80 1403 aa28.19■■■□□ 2.1
DDX41-217ENST00000515562 C9orf84Q5VXU9 1444 aa28.19■■■□□ 2.1
DDX41-217ENST00000515562 ATP10AO60312 1499 aa28.19■■■□□ 2.1
DDX41-217ENST00000515562 ITSN2Q9NZM3 1697 aa28.16■■■□□ 2.1
DDX41-217ENST00000515562 AFAP1Q8N556 730 aa28.13■■■□□ 2.09
DDX41-217ENST00000515562 MLH3Q9UHC1 1453 aa28.11■■■□□ 2.09
DDX41-217ENST00000515562 FER1L4A9Z1Z3 1794 aa28.11■■■□□ 2.09
DDX41-217ENST00000515562 DIP2CQ9Y2E4 1556 aa28.1■■■□□ 2.09
DDX41-217ENST00000515562 MTUS2Q5JR59 1369 aa28.1■■■□□ 2.09
DDX41-217ENST00000515562 ARHGEF12Q9NZN5 1544 aa28.09■■■□□ 2.09
DDX41-217ENST00000515562 REREQ9P2R6 1566 aa28.09■■■□□ 2.09
DDX41-217ENST00000515562 GPATCH8Q9UKJ3 1502 aaKnown RBP28.08■■■□□ 2.09
DDX41-217ENST00000515562 TRAPPC8Q9Y2L5 1435 aa28.08■■■□□ 2.09
DDX41-217ENST00000515562 EHBP1L1Q8N3D4 1523 aa28.07■■■□□ 2.08
DDX41-217ENST00000515562 SAMD9LQ8IVG5 1584 aa28.07■■■□□ 2.08
DDX41-217ENST00000515562 ABCA6Q8N139 1617 aa28.07■■■□□ 2.08
DDX41-217ENST00000515562 MYT1LQ9UL68 1186 aa28.06■■■□□ 2.08
DDX41-217ENST00000515562 MLECQ14165 292 aa28.04■■■□□ 2.08
DDX41-217ENST00000515562 CCNB3Q8WWL7 1395 aa28.03■■■□□ 2.08
DDX41-217ENST00000515562 SYCP2Q9BX26 1530 aa28.02■■■□□ 2.08
DDX41-217ENST00000515562 PLEKHH2Q8IVE3 1493 aa28.01■■■□□ 2.07
DDX41-217ENST00000515562 LMTK3Q96Q04 1460 aa28.01■■■□□ 2.07
DDX41-217ENST00000515562 KIDINS220Q9ULH0 1771 aa27.99■■■□□ 2.07
DDX41-217ENST00000515562 ZNF777Q9ULD5 760 aaPredicted RBP27.99■■■□□ 2.07
DDX41-217ENST00000515562 CFDP1Q9UEE9 299 aaPredicted RBP27.97■■■□□ 2.07
DDX41-217ENST00000515562 KIAA1107Q9UPP5 1409 aa27.97■■■□□ 2.07
DDX41-217ENST00000515562 TIAM1Q13009 1591 aa27.97■■■□□ 2.07
DDX41-217ENST00000515562 AGLP35573 1532 aa27.97■■■□□ 2.07
DDX41-217ENST00000515562 PLPPR3Q6T4P5 718 aa27.91■■■□□ 2.06
DDX41-217ENST00000515562 VPS8Q8N3P4 1428 aa27.9■■■□□ 2.06
DDX41-217ENST00000515562 INO80Q9ULG1 1556 aaPredicted RBP27.9■■■□□ 2.06
DDX41-217ENST00000515562 SUPT6HQ7KZ85 1726 aaKnown RBP27.89■■■□□ 2.06
DDX41-217ENST00000515562 ATP7AQ04656 1500 aa27.89■■■□□ 2.06
DDX41-217ENST00000515562 SPAG9O60271 1321 aaKnown RBP27.89■■■□□ 2.05
DDX41-217ENST00000515562 HNRNPMP52272 730 aaKnown RBP eCLIP27.88■■■□□ 2.05
DDX41-217ENST00000515562 LOC105371045A0A1W2PR82 267 aa27.87■■■□□ 2.05
DDX41-217ENST00000515562 PREX1Q8TCU6 1659 aa27.84■■■□□ 2.05
DDX41-217ENST00000515562 NCOA2Q15596 1464 aa27.84■■■□□ 2.05
DDX41-217ENST00000515562 PLXNC1O60486 1568 aa27.81■■■□□ 2.04
DDX41-217ENST00000515562 MBD5Q9P267 1494 aa27.79■■■□□ 2.04
DDX41-217ENST00000515562 CNTLNQ9NXG0 1405 aa27.79■■■□□ 2.04
DDX41-217ENST00000515562 ESF1Q9H501 851 aaKnown RBP27.79■■■□□ 2.04
DDX41-217ENST00000515562 C3P01024 1663 aa27.78■■■□□ 2.04
DDX41-217ENST00000515562 A2MP01023 1474 aa27.77■■■□□ 2.04
DDX41-217ENST00000515562 ZNF644Q9H582 1327 aaPredicted RBP27.77■■■□□ 2.04
DDX41-217ENST00000515562 CEBPAP49715 358 aaPredicted RBP27.77■■■□□ 2.04
DDX41-217ENST00000515562 ADGBQ8N7X0 1667 aa27.77■■■□□ 2.04
DDX41-217ENST00000515562 LRRC9Q6ZRR7 1453 aa27.76■■■□□ 2.04
DDX41-217ENST00000515562 HSPA2P54652 639 aa27.76■■■□□ 2.03
DDX41-217ENST00000515562 MAP3K1Q13233 1512 aa27.76■■■□□ 2.03
DDX41-217ENST00000515562 CAMSAP2Q08AD1 1489 aa27.75■■■□□ 2.03
DDX41-217ENST00000515562 ILDR1Q86SU0 546 aaPredicted RBP27.74■■■□□ 2.03
DDX41-217ENST00000515562 MROH2AA6NES4 1674 aa27.73■■■□□ 2.03
DDX41-217ENST00000515562 RTEL1-TNFRSF6BF6WH68 1400 aa27.73■■■□□ 2.03
DDX41-217ENST00000515562 UHRF1BP1Q6BDS2 1440 aa27.72■■■□□ 2.03
DDX41-217ENST00000515562 CCDC141Q6ZP82 1450 aa27.71■■■□□ 2.03
DDX41-217ENST00000515562 SETD1BQ9UPS6 1966 aaKnown RBP27.71■■■□□ 2.03
DDX41-217ENST00000515562 ARHGEF5Q12774 1597 aa27.65■■■□□ 2.02
DDX41-217ENST00000515562 RSPH4AQ5TD94 716 aa27.65■■■□□ 2.02
DDX41-217ENST00000515562 CLTCQ00610 1675 aaKnown RBP27.63■■■□□ 2.01
DDX41-217ENST00000515562 NPATQ14207 1427 aa27.62■■■□□ 2.01
DDX41-217ENST00000515562 ZMYM3Q14202 1370 aa27.59■■■□□ 2.01
DDX41-217ENST00000515562 DHX29Q7Z478 1369 aaKnown RBP27.59■■■□□ 2.01
DDX41-217ENST00000515562 PPP6R1Q9UPN7 881 aa27.58■■■□□ 2.01
DDX41-217ENST00000515562 MYOM3Q5VTT5 1437 aa27.58■■■□□ 2
DDX41-217ENST00000515562 KANK4Q5T7N3 995 aaPredicted RBP27.57■■■□□ 2
DDX41-217ENST00000515562 GGT6Q6P531 493 aa27.57■■■□□ 2
DDX41-217ENST00000515562 MIA2Q96PC5 1412 aa27.57■■■□□ 2
DDX41-217ENST00000515562 STRCQ7RTU9 1775 aa27.55■■■□□ 2
DDX41-217ENST00000515562 FAM135AQ9P2D6 1515 aa27.53■■■□□ 2
DDX41-217ENST00000515562 MAST1Q9Y2H9 1570 aa27.52■■■□□ 2
DDX41-217ENST00000515562 TSPY4P0CV99 314 aa27.52■■■□□ 2
DDX41-217ENST00000515562 TSPY10P0CW01 314 aa27.52■■■□□ 2
DDX41-217ENST00000515562 APLP2Q06481 763 aa27.52■■■□□ 2
DDX41-217ENST00000515562 FBXO41Q8TF61 875 aa27.51■■□□□ 1.99
DDX41-217ENST00000515562 DMRT2Q9Y5R5 561 aa27.51■■□□□ 1.99
DDX41-217ENST00000515562 MYO3AQ8NEV4 1616 aa27.49■■□□□ 1.99
DDX41-217ENST00000515562 PTPRKQ15262 1439 aa27.49■■□□□ 1.99
DDX41-217ENST00000515562 ZNF142P52746 1687 aaPredicted RBP27.48■■□□□ 1.99
DDX41-217ENST00000515562 KDM5DQ9BY66 1539 aa27.47■■□□□ 1.99
DDX41-217ENST00000515562 KIF3BO15066 747 aa27.46■■□□□ 1.99
DDX41-217ENST00000515562 NCOA1Q15788 1441 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms