RNA–Protein interactions for RNA: ENST00000514822.1

PHF3-211, Transcript of PHD finger protein 3, humanhuman

TSL 4

Gene PHF3, Length 486 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-211ENST00000514822 SNPHO15079 494 aa12.46□□□□□ -0.41
PHF3-211ENST00000514822 C2orf72A6NCS6 295 aa12.44□□□□□ -0.42
PHF3-211ENST00000514822 KIF3CO14782 793 aa12.43□□□□□ -0.42
PHF3-211ENST00000514822 GPHNQ9NQX3 736 aaPredicted RBP12.4□□□□□ -0.42
PHF3-211ENST00000514822 PDE4AP27815 886 aa12.38□□□□□ -0.43
PHF3-211ENST00000514822 CRISPLD2Q9H0B8 497 aa12.38□□□□□ -0.43
PHF3-211ENST00000514822 FAM163AQ96GL9 167 aaPredicted RBP12.37□□□□□ -0.43
PHF3-211ENST00000514822 PLCB2Q00722 1185 aa12.36□□□□□ -0.43
PHF3-211ENST00000514822 DOK7Q18PE1 504 aa12.36□□□□□ -0.43
PHF3-211ENST00000514822 CADPS2Q86UW7 1296 aa12.36□□□□□ -0.43
PHF3-211ENST00000514822 NCKAP5LQ9HCH0 1330 aa12.36□□□□□ -0.43
PHF3-211ENST00000514822 FOXK1P85037 733 aa12.35□□□□□ -0.43
PHF3-211ENST00000514822 HOXB3P14651 431 aaPredicted RBP12.34□□□□□ -0.43
PHF3-211ENST00000514822 RIMBP2O15034 1052 aa12.32□□□□□ -0.44
PHF3-211ENST00000514822 ZNF710Q8N1W2 664 aa12.32□□□□□ -0.44
PHF3-211ENST00000514822 DSG2Q14126 1118 aa12.31□□□□□ -0.44
PHF3-211ENST00000514822 LARP6Q9BRS8 491 aaKnown RBP12.31□□□□□ -0.44
PHF3-211ENST00000514822 ST18O60284 1047 aa12.3□□□□□ -0.44
PHF3-211ENST00000514822 PLPP6Q8IY26 295 aa12.3□□□□□ -0.44
PHF3-211ENST00000514822 PPP1R15BQ5SWA1 713 aa12.29□□□□□ -0.44
PHF3-211ENST00000514822 DDX27Q96GQ7 796 aaKnown RBP12.29□□□□□ -0.44
PHF3-211ENST00000514822 MFSD10Q14728 455 aa12.27□□□□□ -0.45
PHF3-211ENST00000514822 LCE2DQ5TA82 110 aaPredicted RBP12.27□□□□□ -0.45
PHF3-211ENST00000514822 ZSWIM6Q9HCJ5 1215 aa12.27□□□□□ -0.45
PHF3-211ENST00000514822 TSHZ2Q9NRE2 1034 aa12.26□□□□□ -0.45
PHF3-211ENST00000514822 SLC34A2O95436 690 aa12.24□□□□□ -0.45
PHF3-211ENST00000514822 HOXB1P14653 301 aaPredicted RBP12.21□□□□□ -0.45
PHF3-211ENST00000514822 HAP1P54257 671 aaPredicted RBP12.19□□□□□ -0.46
PHF3-211ENST00000514822 GPR153Q6NV75 609 aa12.19□□□□□ -0.46
PHF3-211ENST00000514822 WDR70Q9NW82 654 aa12.19□□□□□ -0.46
PHF3-211ENST00000514822 PTCD2Q8WV60 388 aaKnown RBP12.18□□□□□ -0.46
PHF3-211ENST00000514822 ARSIQ5FYB1 569 aa12.17□□□□□ -0.46
PHF3-211ENST00000514822 PCDHGA4Q9Y5G9 962 aa12.17□□□□□ -0.46
PHF3-211ENST00000514822 TBC1D12O60347 775 aa12.16□□□□□ -0.46
PHF3-211ENST00000514822 MARVELD3Q96A59 401 aa12.16□□□□□ -0.46
PHF3-211ENST00000514822 POTEMA6NI47 508 aa12.15□□□□□ -0.46
PHF3-211ENST00000514822 EMP3P54852 163 aa12.15□□□□□ -0.46
PHF3-211ENST00000514822 POTEGQ6S5H5 508 aa12.14□□□□□ -0.47
PHF3-211ENST00000514822 UPF1Q92900 1129 aaKnown RBP eCLIP12.14□□□□□ -0.47
PHF3-211ENST00000514822 OXER1Q8TDS5 423 aa12.13□□□□□ -0.47
PHF3-211ENST00000514822 KHSRPQ92945 711 aaKnown RBP eCLIP12.12□□□□□ -0.473e-6■■■■□ 20.1
PHF3-211ENST00000514822 CAMK2BQ13554 666 aa12.11□□□□□ -0.47
PHF3-211ENST00000514822 NUDT7P0C024 238 aa12.1□□□□□ -0.47
PHF3-211ENST00000514822 EMILIN3Q9NT22 766 aa12.09□□□□□ -0.47
PHF3-211ENST00000514822 E2F4Q16254 413 aa12.08□□□□□ -0.48
PHF3-211ENST00000514822 ERBB3P21860 1342 aa12.08□□□□□ -0.48
PHF3-211ENST00000514822 FAM205CA6NFA0 338 aa12.07□□□□□ -0.48
PHF3-211ENST00000514822 MAP3K9P80192 1104 aa12.07□□□□□ -0.48
PHF3-211ENST00000514822 ZNF316A6NFI3 1004 aaPredicted RBP12.04□□□□□ -0.48
PHF3-211ENST00000514822 HS3ST6Q96QI5 342 aa12.04□□□□□ -0.48
PHF3-211ENST00000514822 KDM4FA0A1W2PPD8 638 aa12.03□□□□□ -0.48
PHF3-211ENST00000514822 DPYSL4O14531 572 aa12.01□□□□□ -0.49
PHF3-211ENST00000514822 EVI5O60447 810 aa12.01□□□□□ -0.49
PHF3-211ENST00000514822 VARS2Q5ST30 1063 aaKnown RBP12.01□□□□□ -0.49
PHF3-211ENST00000514822 LHX6Q9UPM6 363 aa12.01□□□□□ -0.49
PHF3-211ENST00000514822 VSIG10Q8N0Z9 540 aa11.99□□□□□ -0.49
PHF3-211ENST00000514822 PSDA5PKW4 1024 aaPredicted RBP11.98□□□□□ -0.49
PHF3-211ENST00000514822 POTEB3A0JP26 581 aa11.97□□□□□ -0.49
PHF3-211ENST00000514822 POTEBQ6S5H4 581 aa11.97□□□□□ -0.49
PHF3-211ENST00000514822 ARIH1Q9Y4X5 557 aaPredicted RBP11.97□□□□□ -0.49
PHF3-211ENST00000514822 P3H3Q8IVL6 736 aa11.96□□□□□ -0.49
PHF3-211ENST00000514822 CDAN1Q8IWY9 1227 aa11.96□□□□□ -0.49
PHF3-211ENST00000514822 ANO8Q9HCE9 1232 aaPredicted RBP11.96□□□□□ -0.49
PHF3-211ENST00000514822 PCDH10Q9P2E7 1040 aa11.96□□□□□ -0.49
PHF3-211ENST00000514822 KDM2AQ9Y2K7 1162 aa11.95□□□□□ -0.5
PHF3-211ENST00000514822 KCNV2Q8TDN2 545 aa11.94□□□□□ -0.5
PHF3-211ENST00000514822 ZNF687Q8N1G0 1237 aa11.93□□□□□ -0.5
PHF3-211ENST00000514822 SPDYE16A6NNV3 312 aaPredicted RBP11.92□□□□□ -0.5
PHF3-211ENST00000514822 PDIA6Q15084 440 aa11.92□□□□□ -0.5
PHF3-211ENST00000514822 ARHGEF1Q92888 912 aaKnown RBP11.92□□□□□ -0.5
PHF3-211ENST00000514822 PPP4R3BQ5MIZ7 849 aa11.91□□□□□ -0.5
PHF3-211ENST00000514822 ZNF454Q8N9F8 522 aa11.89□□□□□ -0.51
PHF3-211ENST00000514822 JPH4Q96JJ6 628 aa11.88□□□□□ -0.51
PHF3-211ENST00000514822 FOSBP53539 338 aa11.87□□□□□ -0.51
PHF3-211ENST00000514822 PTGER2P43116 358 aa11.85□□□□□ -0.51
PHF3-211ENST00000514822 PHF14O94880 888 aa11.84□□□□□ -0.51
PHF3-211ENST00000514822 PBX2P40425 430 aa11.83□□□□□ -0.52
PHF3-211ENST00000514822 ZDHHC16Q969W1 377 aa11.83□□□□□ -0.52
PHF3-211ENST00000514822 DDX12PQ92771 950 aa11.82□□□□□ -0.52
PHF3-211ENST00000514822 PCDHGA10Q9Y5H3 936 aa11.82□□□□□ -0.52
PHF3-211ENST00000514822 KRTAP3-3Q9BYR6 98 aa11.81□□□□□ -0.52
PHF3-211ENST00000514822 KRTAP3-2Q9BYR7 98 aa11.81□□□□□ -0.52
PHF3-211ENST00000514822 TYW1BQ6NUM6 668 aa11.8□□□□□ -0.52
PHF3-211ENST00000514822 FBXW7Q969H0 707 aa11.8□□□□□ -0.52
PHF3-211ENST00000514822 KCNH8Q96L42 1107 aa11.8□□□□□ -0.52
PHF3-211ENST00000514822 EPAS1Q99814 870 aa11.8□□□□□ -0.52
PHF3-211ENST00000514822 ARHGAP33O14559 1287 aa11.79□□□□□ -0.52
PHF3-211ENST00000514822 POTEEQ6S8J3 1075 aa11.79□□□□□ -0.52
PHF3-211ENST00000514822 BCL2L12Q9HB09 334 aa11.79□□□□□ -0.52
PHF3-211ENST00000514822 GRXCR2A6NFK2 248 aa11.77□□□□□ -0.53
PHF3-211ENST00000514822 ADAM33Q9BZ11 813 aa11.77□□□□□ -0.53
PHF3-211ENST00000514822 AXIN2Q9Y2T1 843 aa11.77□□□□□ -0.53
PHF3-211ENST00000514822 PTPREP23469 700 aa11.76□□□□□ -0.53
PHF3-211ENST00000514822 NBR1Q14596 966 aa11.76□□□□□ -0.53
PHF3-211ENST00000514822 KCNK17Q96T54 332 aa11.75□□□□□ -0.53
PHF3-211ENST00000514822 PSEN2P49810 448 aa11.73□□□□□ -0.53
PHF3-211ENST00000514822 LSM11P83369 360 aaKnown RBP eCLIP11.73□□□□□ -0.53
PHF3-211ENST00000514822 SLC24A1O60721 1099 aa11.71□□□□□ -0.53
PHF3-211ENST00000514822 EN1Q05925 392 aaPredicted RBP11.71□□□□□ -0.53
PHF3-211ENST00000514822 ANKRD13DQ6ZTN6 518 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms