RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 TPRNQ4KMQ1 711 aa9.99□□□□□ -0.81
CLCN3-209ENST00000513761 CCDC18Q5T9S5 1454 aa9.98□□□□□ -0.81
CLCN3-209ENST00000513761 CFAP53Q96M91 514 aa9.98□□□□□ -0.81
CLCN3-209ENST00000513761 STAG3Q9UJ98 1225 aa9.98□□□□□ -0.81
CLCN3-209ENST00000513761 PHLDB1Q86UU1 1377 aa9.98□□□□□ -0.81
CLCN3-209ENST00000513761 MSH5O43196 834 aa9.98□□□□□ -0.81
CLCN3-209ENST00000513761 PAK3O75914 559 aaPredicted RBP9.98□□□□□ -0.81
CLCN3-209ENST00000513761 HSP90AB1P08238 724 aaKnown RBP9.98□□□□□ -0.81
CLCN3-209ENST00000513761 RRP1P56182 461 aaKnown RBP9.98□□□□□ -0.81
CLCN3-209ENST00000513761 ROCK2O75116 1388 aaKnown RBP9.97□□□□□ -0.81
CLCN3-209ENST00000513761 WASHC2AQ641Q2 1341 aa9.97□□□□□ -0.81
CLCN3-209ENST00000513761 USP35Q9P2H5 1018 aa9.97□□□□□ -0.81
CLCN3-209ENST00000513761 NLRP13Q86W25 1043 aa9.96□□□□□ -0.81
CLCN3-209ENST00000513761 PTMAP06454 111 aaKnown RBP9.96□□□□□ -0.82
CLCN3-209ENST00000513761 GSE1Q14687 1217 aa9.96□□□□□ -0.82
CLCN3-209ENST00000513761 HSCBQ8IWL3 235 aa9.95□□□□□ -0.82
CLCN3-209ENST00000513761 ST20-MTHFSA0A0A6YYL1 179 aa9.95□□□□□ -0.82
CLCN3-209ENST00000513761 CRBNQ96SW2 442 aa9.94□□□□□ -0.82
CLCN3-209ENST00000513761 NUP155O75694 1391 aa9.94□□□□□ -0.82
CLCN3-209ENST00000513761 TDRD9Q8NDG6 1382 aaKnown RBP9.94□□□□□ -0.82
CLCN3-209ENST00000513761 DNTTIP2Q5QJE6 756 aaKnown RBP9.94□□□□□ -0.82
CLCN3-209ENST00000513761 CCDC146Q8IYE0 955 aa9.94□□□□□ -0.82
CLCN3-209ENST00000513761 ARAP1Q96P48 1450 aa9.93□□□□□ -0.82
CLCN3-209ENST00000513761 RRBP1Q9P2E9 1410 aaKnown RBP9.93□□□□□ -0.82
CLCN3-209ENST00000513761 PDE3BQ13370 1112 aa9.93□□□□□ -0.82
CLCN3-209ENST00000513761 PNNQ9H307 717 aaKnown RBP9.93□□□□□ -0.82
CLCN3-209ENST00000513761 MYBBP1AQ9BQG0 1328 aaKnown RBP9.93□□□□□ -0.82
CLCN3-209ENST00000513761 U2SURPO15042 1029 aaKnown RBP9.93□□□□□ -0.82
CLCN3-209ENST00000513761 CCDC184Q52MB2 194 aa9.93□□□□□ -0.82
CLCN3-209ENST00000513761 CCDC7Q96M83 1385 aa9.93□□□□□ -0.82
CLCN3-209ENST00000513761 ATAD2BQ9ULI0 1458 aa9.92□□□□□ -0.82
CLCN3-209ENST00000513761 KIF7Q2M1P5 1343 aa9.92□□□□□ -0.82
CLCN3-209ENST00000513761 MAPK8IP3Q9UPT6 1336 aa9.92□□□□□ -0.82
CLCN3-209ENST00000513761 GOLGA2Q08379 1002 aa9.92□□□□□ -0.82
CLCN3-209ENST00000513761 KIF15Q9NS87 1388 aa9.92□□□□□ -0.82
CLCN3-209ENST00000513761 IL27Q8NEV9 243 aa9.92□□□□□ -0.82
CLCN3-209ENST00000513761 ANO8Q9HCE9 1232 aaPredicted RBP9.92□□□□□ -0.82
CLCN3-209ENST00000513761 USP47Q96K76 1375 aa9.91□□□□□ -0.82
CLCN3-209ENST00000513761 CNTLNQ9NXG0 1405 aa9.91□□□□□ -0.82
CLCN3-209ENST00000513761 WDR97A6NE52 1622 aa9.9□□□□□ -0.82
CLCN3-209ENST00000513761 FAM161AQ3B820 660 aa9.9□□□□□ -0.82
CLCN3-209ENST00000513761 CLUAP1Q96AJ1 413 aa9.9□□□□□ -0.82
CLCN3-209ENST00000513761 GOLGA6L3A6NEY3 463 aa9.9□□□□□ -0.82
CLCN3-209ENST00000513761 MFAP1P55081 439 aaKnown RBP9.89□□□□□ -0.83
CLCN3-209ENST00000513761 LRRC9Q6ZRR7 1453 aa9.89□□□□□ -0.83
CLCN3-209ENST00000513761 MORC1Q86VD1 984 aa9.89□□□□□ -0.83
CLCN3-209ENST00000513761 PLCB2Q00722 1185 aa9.89□□□□□ -0.83
CLCN3-209ENST00000513761 AKNAQ7Z591 1439 aa9.89□□□□□ -0.83
CLCN3-209ENST00000513761 CENPQQ7L2Z9 268 aaPredicted RBP9.88□□□□□ -0.83
CLCN3-209ENST00000513761 UACAQ9BZF9 1416 aa9.88□□□□□ -0.83
CLCN3-209ENST00000513761 MS4A1P11836 297 aa9.88□□□□□ -0.83
CLCN3-209ENST00000513761 SYNJ1O43426 1573 aa9.88□□□□□ -0.83
CLCN3-209ENST00000513761 ZBTB7CA1YPR0 619 aa9.88□□□□□ -0.83
CLCN3-209ENST00000513761 MSNP26038 577 aaKnown RBP9.88□□□□□ -0.83
CLCN3-209ENST00000513761 ARID3AQ99856 593 aa9.88□□□□□ -0.83
CLCN3-209ENST00000513761 IGF1RP08069 1367 aa9.88□□□□□ -0.83
CLCN3-209ENST00000513761 FGD6Q6ZV73 1430 aa9.88□□□□□ -0.83
CLCN3-209ENST00000513761 PANK3Q9H999 370 aa9.88□□□□□ -0.83
CLCN3-209ENST00000513761 CASC1Q6TDU7 716 aa9.87□□□□□ -0.83
CLCN3-209ENST00000513761 NFKBIBQ15653 356 aa9.87□□□□□ -0.83
CLCN3-209ENST00000513761 ANKRD30AQ9BXX3 1397 aa9.87□□□□□ -0.83
CLCN3-209ENST00000513761 RWDD1Q9H446 243 aaPredicted RBP9.86□□□□□ -0.83
CLCN3-209ENST00000513761 BRPF3Q9ULD4 1205 aa9.86□□□□□ -0.83
CLCN3-209ENST00000513761 ITPRIPQ8IWB1 547 aa9.85□□□□□ -0.83
CLCN3-209ENST00000513761 FOXD4L1Q9NU39 408 aa9.85□□□□□ -0.83
CLCN3-209ENST00000513761 RSPH6AQ9H0K4 717 aa9.84□□□□□ -0.83
CLCN3-209ENST00000513761 PLPPR3Q6T4P5 718 aa9.84□□□□□ -0.83
CLCN3-209ENST00000513761 CENPJQ9HC77 1338 aaPredicted RBP9.84□□□□□ -0.83
CLCN3-209ENST00000513761 HNRNPMP52272 730 aaKnown RBP eCLIP9.84□□□□□ -0.83
CLCN3-209ENST00000513761 SAFB2Q14151 953 aaKnown RBP eCLIP9.84□□□□□ -0.83
CLCN3-209ENST00000513761 PMFBP1Q8TBY8 1022 aa9.84□□□□□ -0.83
CLCN3-209ENST00000513761 BCL2L13Q9BXK5 485 aa9.84□□□□□ -0.83
CLCN3-209ENST00000513761 CDCA7LQ96GN5 454 aa9.84□□□□□ -0.83
CLCN3-209ENST00000513761 GBP4Q96PP9 640 aa9.84□□□□□ -0.83
CLCN3-209ENST00000513761 U2AF1L5P0DN76 240 aaPredicted RBP9.84□□□□□ -0.83
CLCN3-209ENST00000513761 U2AF1Q01081 240 aaKnown RBP eCLIP9.84□□□□□ -0.838e-8■■■■□ 19.8
CLCN3-209ENST00000513761 RRP7AQ9Y3A4 280 aaKnown RBP9.83□□□□□ -0.84
CLCN3-209ENST00000513761 NPM1P06748 294 aaKnown RBP eCLIP9.83□□□□□ -0.84
CLCN3-209ENST00000513761 APBB1O00213 710 aa9.83□□□□□ -0.84
CLCN3-209ENST00000513761 ESF1Q9H501 851 aaKnown RBP9.83□□□□□ -0.84
CLCN3-209ENST00000513761 COG6Q9Y2V7 657 aa9.83□□□□□ -0.84
CLCN3-209ENST00000513761 CADPSQ9ULU8 1353 aa9.82□□□□□ -0.84
CLCN3-209ENST00000513761 ZNF644Q9H582 1327 aaPredicted RBP9.82□□□□□ -0.84
CLCN3-209ENST00000513761 HSP90AA2PQ14568 343 aaPredicted RBP9.81□□□□□ -0.84
CLCN3-209ENST00000513761 NBPF8Q3BBV2 869 aa9.81□□□□□ -0.84
CLCN3-209ENST00000513761 MYOM3Q5VTT5 1437 aa9.8□□□□□ -0.84
CLCN3-209ENST00000513761 SMC4Q9NTJ3 1288 aa9.8□□□□□ -0.84
CLCN3-209ENST00000513761 APAF1O14727 1248 aa9.8□□□□□ -0.84
CLCN3-209ENST00000513761 POGKQ9P215 609 aa9.8□□□□□ -0.84
CLCN3-209ENST00000513761 VSIG10Q8N0Z9 540 aa9.8□□□□□ -0.84
CLCN3-209ENST00000513761 CHMP4BQ9H444 224 aaKnown RBP9.79□□□□□ -0.84
CLCN3-209ENST00000513761 PLEKHG5O94827 1062 aa9.79□□□□□ -0.84
CLCN3-209ENST00000513761 ERICH3Q5RHP9 1530 aa9.79□□□□□ -0.84
CLCN3-209ENST00000513761 FRAT2O75474 233 aaPredicted RBP9.79□□□□□ -0.84
CLCN3-209ENST00000513761 PRXQ9BXM0 1461 aa9.79□□□□□ -0.84
CLCN3-209ENST00000513761 SRPK2P78362 688 aaKnown RBP9.79□□□□□ -0.84
CLCN3-209ENST00000513761 BACH2Q9BYV9 841 aa9.78□□□□□ -0.84
CLCN3-209ENST00000513761 IPO8O15397 1037 aaKnown RBP9.77□□□□□ -0.84
CLCN3-209ENST00000513761 FGD5Q6ZNL6 1462 aa9.77□□□□□ -0.85
CLCN3-209ENST00000513761 NCOA2Q15596 1464 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms