RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 POGZQ7Z3K3 1410 aa15.49■□□□□ 0.07
RNF4-221ENST00000513643 ZMYM4Q5VZL5 1548 aa15.48■□□□□ 0.07
RNF4-221ENST00000513643 CDC42BPBQ9Y5S2 1711 aa15.48■□□□□ 0.07
RNF4-221ENST00000513643 MTUS2Q5JR59 1369 aa15.48■□□□□ 0.07
RNF4-221ENST00000513643 MAP3K1Q13233 1512 aa15.48■□□□□ 0.07
RNF4-221ENST00000513643 MAGI2Q86UL8 1455 aa15.47■□□□□ 0.07
RNF4-221ENST00000513643 ARHGAP5Q13017 1502 aa15.46■□□□□ 0.07
RNF4-221ENST00000513643 ARHGEF12Q9NZN5 1544 aa15.46■□□□□ 0.07
RNF4-221ENST00000513643 PREX2Q70Z35 1606 aa15.46■□□□□ 0.06
RNF4-221ENST00000513643 EHBP1L1Q8N3D4 1523 aa15.44■□□□□ 0.06
RNF4-221ENST00000513643 AFAP1Q8N556 730 aa15.44■□□□□ 0.06
RNF4-221ENST00000513643 TIAM1Q13009 1591 aa15.44■□□□□ 0.06
RNF4-221ENST00000513643 CDC42BPAQ5VT25 1732 aa15.43■□□□□ 0.06
RNF4-221ENST00000513643 YEATS2Q9ULM3 1422 aa15.43■□□□□ 0.06
RNF4-221ENST00000513643 KIAA1107Q9UPP5 1409 aa15.43■□□□□ 0.06
RNF4-221ENST00000513643 KDM5CP41229 1560 aa15.42■□□□□ 0.06
RNF4-221ENST00000513643 ZNF518AQ6AHZ1 1483 aa15.42■□□□□ 0.06
RNF4-221ENST00000513643 CCNB3Q8WWL7 1395 aa15.42■□□□□ 0.06
RNF4-221ENST00000513643 AEBP2Q6ZN18 517 aaPredicted RBP15.42■□□□□ 0.06
RNF4-221ENST00000513643 ABCC1P33527 1531 aa15.42■□□□□ 0.06
RNF4-221ENST00000513643 TRAPPC8Q9Y2L5 1435 aa15.42■□□□□ 0.06
RNF4-221ENST00000513643 LRRC9Q6ZRR7 1453 aa15.41■□□□□ 0.06
RNF4-221ENST00000513643 KANK4Q5T7N3 995 aaPredicted RBP15.41■□□□□ 0.06
RNF4-221ENST00000513643 ARHGEF40Q8TER5 1519 aa15.41■□□□□ 0.06
RNF4-221ENST00000513643 MLH3Q9UHC1 1453 aa15.4■□□□□ 0.06
RNF4-221ENST00000513643 CFDP1Q9UEE9 299 aaPredicted RBP15.4■□□□□ 0.06
RNF4-221ENST00000513643 NCOA2Q15596 1464 aa15.39■□□□□ 0.05
RNF4-221ENST00000513643 ZFYVE16Q7Z3T8 1539 aa15.38■□□□□ 0.05
RNF4-221ENST00000513643 SAMD9LQ8IVG5 1584 aa15.38■□□□□ 0.05
RNF4-221ENST00000513643 ATP10AO60312 1499 aa15.37■□□□□ 0.05
RNF4-221ENST00000513643 PLEKHH2Q8IVE3 1493 aa15.36■□□□□ 0.05
RNF4-221ENST00000513643 MBD5Q9P267 1494 aa15.36■□□□□ 0.05
RNF4-221ENST00000513643 ZNF644Q9H582 1327 aaPredicted RBP15.36■□□□□ 0.05
RNF4-221ENST00000513643 HNRNPMP52272 730 aaKnown RBP eCLIP15.35■□□□□ 0.056e-9■■■■■ 27.4
RNF4-221ENST00000513643 ZNF777Q9ULD5 760 aaPredicted RBP15.34■□□□□ 0.05
RNF4-221ENST00000513643 ADAMTSL3P82987 1691 aa15.34■□□□□ 0.05
RNF4-221ENST00000513643 ITSN2Q9NZM3 1697 aa15.34■□□□□ 0.05
RNF4-221ENST00000513643 SIGLEC1Q9BZZ2 1709 aa15.33■□□□□ 0.04
RNF4-221ENST00000513643 SYCP2Q9BX26 1530 aa15.33■□□□□ 0.04
RNF4-221ENST00000513643 SUPT6HQ7KZ85 1726 aaKnown RBP15.32■□□□□ 0.04
RNF4-221ENST00000513643 C9orf84Q5VXU9 1444 aa15.32■□□□□ 0.04
RNF4-221ENST00000513643 REREQ9P2R6 1566 aa15.31■□□□□ 0.04
RNF4-221ENST00000513643 BCORL1Q5H9F3 1711 aa15.31■□□□□ 0.04
RNF4-221ENST00000513643 HECW2Q9P2P5 1572 aa15.3■□□□□ 0.04
RNF4-221ENST00000513643 DIP2CQ9Y2E4 1556 aa15.3■□□□□ 0.04
RNF4-221ENST00000513643 KIDINS220Q9ULH0 1771 aa15.29■□□□□ 0.04
RNF4-221ENST00000513643 ARID4BQ4LE39 1312 aaPredicted RBP15.29■□□□□ 0.04
RNF4-221ENST00000513643 RSPH4AQ5TD94 716 aa15.29■□□□□ 0.04
RNF4-221ENST00000513643 AGLP35573 1532 aa15.28■□□□□ 0.04
RNF4-221ENST00000513643 MIA2Q96PC5 1412 aa15.28■□□□□ 0.04
RNF4-221ENST00000513643 SPAG9O60271 1321 aaKnown RBP15.28■□□□□ 0.04
RNF4-221ENST00000513643 ABCA6Q8N139 1617 aa15.27■□□□□ 0.03
RNF4-221ENST00000513643 PTPRMP28827 1452 aa15.27■□□□□ 0.03
RNF4-221ENST00000513643 RTEL1-TNFRSF6BF6WH68 1400 aa15.26■□□□□ 0.03
RNF4-221ENST00000513643 MYOM3Q5VTT5 1437 aa15.26■□□□□ 0.03
RNF4-221ENST00000513643 CAMSAP2Q08AD1 1489 aa15.26■□□□□ 0.03
RNF4-221ENST00000513643 APLP2Q06481 763 aa15.25■□□□□ 0.03
RNF4-221ENST00000513643 INO80Q9ULG1 1556 aaPredicted RBP15.24■□□□□ 0.03
RNF4-221ENST00000513643 ATP7AQ04656 1500 aa15.22■□□□□ 0.03
RNF4-221ENST00000513643 CCDC141Q6ZP82 1450 aa15.22■□□□□ 0.03
RNF4-221ENST00000513643 MADDQ8WXG6 1647 aa15.22■□□□□ 0.03
RNF4-221ENST00000513643 ARHGEF5Q12774 1597 aa15.22■□□□□ 0.03
RNF4-221ENST00000513643 PLXNC1O60486 1568 aa15.2■□□□□ 0.02
RNF4-221ENST00000513643 MYT1LQ9UL68 1186 aa15.2■□□□□ 0.02
RNF4-221ENST00000513643 MLECQ14165 292 aa15.19■□□□□ 0.02
RNF4-221ENST00000513643 A2MP01023 1474 aa15.19■□□□□ 0.02
RNF4-221ENST00000513643 DHX29Q7Z478 1369 aaKnown RBP15.18■□□□□ 0.02
RNF4-221ENST00000513643 TCOF1Q13428 1488 aaKnown RBP15.18■□□□□ 0.02
RNF4-221ENST00000513643 FGD6Q6ZV73 1430 aa15.17■□□□□ 0.02
RNF4-221ENST00000513643 TSPY4P0CV99 314 aa15.16■□□□□ 0.02
RNF4-221ENST00000513643 TSPY10P0CW01 314 aa15.16■□□□□ 0.02
RNF4-221ENST00000513643 PPP6R1Q9UPN7 881 aa15.15■□□□□ 0.02
RNF4-221ENST00000513643 MAST1Q9Y2H9 1570 aa15.15■□□□□ 0.02
RNF4-221ENST00000513643 ABCC5O15440 1437 aa15.14■□□□□ 0.01
RNF4-221ENST00000513643 RIMS1Q86UR5 1692 aaKnown RBP15.13■□□□□ 0.01
RNF4-221ENST00000513643 PTPN23Q9H3S7 1636 aa15.11■□□□□ 0.01
RNF4-221ENST00000513643 ADGBQ8N7X0 1667 aa15.11■□□□□ 0.01
RNF4-221ENST00000513643 FER1L4A9Z1Z3 1794 aa15.11■□□□□ 0.01
RNF4-221ENST00000513643 CNTLNQ9NXG0 1405 aa15.1■□□□□ 0.01
RNF4-221ENST00000513643 SHANK2Q9UPX8 1470 aa15.1■□□□□ 0.01
RNF4-221ENST00000513643 CEBPAP49715 358 aaPredicted RBP15.1■□□□□ 0.01
RNF4-221ENST00000513643 DAPK1P53355 1430 aa15.09■□□□□ 0.01
RNF4-221ENST00000513643 LMTK3Q96Q04 1460 aa15.08■□□□□ 0.01
RNF4-221ENST00000513643 ZMYM3Q14202 1370 aa15.08■□□□□ 0
RNF4-221ENST00000513643 KIF3BO15066 747 aa15.06■□□□□ 0
RNF4-221ENST00000513643 GGT6Q6P531 493 aa15.06■□□□□ 0
RNF4-221ENST00000513643 DNMT1P26358 1616 aaKnown RBP15.06■□□□□ 0
RNF4-221ENST00000513643 SETD1BQ9UPS6 1966 aaKnown RBP15.04■□□□□ -0
RNF4-221ENST00000513643 NCOA1Q15788 1441 aa15.04■□□□□ -0
RNF4-221ENST00000513643 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.04■□□□□ -0
RNF4-221ENST00000513643 FAM135AQ9P2D6 1515 aa15.03■□□□□ -0
RNF4-221ENST00000513643 NPATQ14207 1427 aa15.03■□□□□ -0
RNF4-221ENST00000513643 MROH2AA6NES4 1674 aa15.03■□□□□ -0
RNF4-221ENST00000513643 DUOX2Q9NRD8 1548 aa15.02■□□□□ -0
RNF4-221ENST00000513643 ESF1Q9H501 851 aaKnown RBP15.02■□□□□ -0
RNF4-221ENST00000513643 C3P01024 1663 aa15.02□□□□□ -0.01
RNF4-221ENST00000513643 ADGRL2O95490 1459 aa15.01□□□□□ -0.01
RNF4-221ENST00000513643 PTPRKQ15262 1439 aa15.01□□□□□ -0.01
RNF4-221ENST00000513643 KIF15Q9NS87 1388 aa15.01□□□□□ -0.01
RNF4-221ENST00000513643 CROCC2H7BZ55 1655 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms