RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 CSRNP3Q8WYN3 585 aa19.66■□□□□ 0.74
RNF4-216ENST00000511859 SIGLEC1Q9BZZ2 1709 aa19.66■□□□□ 0.74
RNF4-216ENST00000511859 PREX1Q8TCU6 1659 aa19.64■□□□□ 0.73
RNF4-216ENST00000511859 HECW1Q76N89 1606 aa19.63■□□□□ 0.73
RNF4-216ENST00000511859 ATP10AO60312 1499 aa19.61■□□□□ 0.73
RNF4-216ENST00000511859 SCAPERQ9BY12 1400 aa19.61■□□□□ 0.73
RNF4-216ENST00000511859 ARHGEF12Q9NZN5 1544 aa19.61■□□□□ 0.73
RNF4-216ENST00000511859 CEBPAP49715 358 aaPredicted RBP19.59■□□□□ 0.73
RNF4-216ENST00000511859 STRCQ7RTU9 1775 aa19.59■□□□□ 0.73
RNF4-216ENST00000511859 PLCH2O75038 1416 aa19.59■□□□□ 0.73
RNF4-216ENST00000511859 RANGAP1P46060 587 aaPredicted RBP19.58■□□□□ 0.73
RNF4-216ENST00000511859 C9orf84Q5VXU9 1444 aa19.57■□□□□ 0.72
RNF4-216ENST00000511859 EFCAB2Q5VUJ9 269 aa19.55■□□□□ 0.72
RNF4-216ENST00000511859 UHRF1BP1Q6BDS2 1440 aa19.55■□□□□ 0.72
RNF4-216ENST00000511859 PTPRTO14522 1441 aa19.52■□□□□ 0.72
RNF4-216ENST00000511859 SPATA31D1Q6ZQQ2 1576 aa19.5■□□□□ 0.71
RNF4-216ENST00000511859 CDK11AQ9UQ88 783 aaPredicted RBP19.46■□□□□ 0.71
RNF4-216ENST00000511859 ZNF518AQ6AHZ1 1483 aa19.46■□□□□ 0.71
RNF4-216ENST00000511859 IQSEC2Q5JU85 1478 aa19.45■□□□□ 0.7
RNF4-216ENST00000511859 MYO5CQ9NQX4 1742 aa19.45■□□□□ 0.7
RNF4-216ENST00000511859 EEA1Q15075 1411 aa19.45■□□□□ 0.7
RNF4-216ENST00000511859 AFAP1Q8N556 730 aa19.44■□□□□ 0.7
RNF4-216ENST00000511859 MYT1LQ9UL68 1186 aa19.44■□□□□ 0.7
RNF4-216ENST00000511859 CDK13Q14004 1512 aaKnown RBP19.44■□□□□ 0.7
RNF4-216ENST00000511859 ESF1Q9H501 851 aaKnown RBP19.44■□□□□ 0.7
RNF4-216ENST00000511859 LTBP4Q8N2S1 1624 aa19.42■□□□□ 0.7
RNF4-216ENST00000511859 TRAPPC8Q9Y2L5 1435 aa19.41■□□□□ 0.7
RNF4-216ENST00000511859 KDM5CP41229 1560 aa19.4■□□□□ 0.7
RNF4-216ENST00000511859 ATP1B4Q9UN42 357 aaPredicted RBP19.4■□□□□ 0.7
RNF4-216ENST00000511859 REREQ9P2R6 1566 aa19.4■□□□□ 0.7
RNF4-216ENST00000511859 C3P01024 1663 aa19.4■□□□□ 0.7
RNF4-216ENST00000511859 DIP2CQ9Y2E4 1556 aa19.36■□□□□ 0.69
RNF4-216ENST00000511859 MLH3Q9UHC1 1453 aa19.36■□□□□ 0.69
RNF4-216ENST00000511859 NCOA1Q15788 1441 aa19.36■□□□□ 0.69
RNF4-216ENST00000511859 CHIC1Q5VXU3 224 aa19.35■□□□□ 0.69
RNF4-216ENST00000511859 AGLP35573 1532 aa19.35■□□□□ 0.69
RNF4-216ENST00000511859 ARHGAP5Q13017 1502 aa19.35■□□□□ 0.69
RNF4-216ENST00000511859 FMN1Q68DA7 1419 aa19.35■□□□□ 0.69
RNF4-216ENST00000511859 CNTLNQ9NXG0 1405 aa19.33■□□□□ 0.69
RNF4-216ENST00000511859 KIF14Q15058 1648 aa19.32■□□□□ 0.68
RNF4-216ENST00000511859 TROQ12816 1431 aaPredicted RBP19.31■□□□□ 0.68
RNF4-216ENST00000511859 CLIP1P30622 1438 aa19.31■□□□□ 0.68
RNF4-216ENST00000511859 UBAP1LF5GYI3 381 aa19.3■□□□□ 0.68
RNF4-216ENST00000511859 ABCA6Q8N139 1617 aa19.29■□□□□ 0.68
RNF4-216ENST00000511859 NPATQ14207 1427 aa19.27■□□□□ 0.68
RNF4-216ENST00000511859 CDC42BPBQ9Y5S2 1711 aa19.27■□□□□ 0.68
RNF4-216ENST00000511859 CAMSAP1Q5T5Y3 1602 aa19.27■□□□□ 0.67
RNF4-216ENST00000511859 PKD2Q13563 968 aa19.25■□□□□ 0.67
RNF4-216ENST00000511859 NCKAP5LQ9HCH0 1330 aa19.25■□□□□ 0.67
RNF4-216ENST00000511859 ZMYM3Q14202 1370 aa19.24■□□□□ 0.67
RNF4-216ENST00000511859 ZNF335Q9H4Z2 1342 aaPredicted RBP19.24■□□□□ 0.67
RNF4-216ENST00000511859 UBTFP17480 764 aaKnown RBP19.23■□□□□ 0.67
RNF4-216ENST00000511859 KIDINS220Q9ULH0 1771 aa19.22■□□□□ 0.67
RNF4-216ENST00000511859 MROH2AA6NES4 1674 aa19.22■□□□□ 0.67
RNF4-216ENST00000511859 ARHGAP35Q9NRY4 1499 aa19.2■□□□□ 0.66
RNF4-216ENST00000511859 ABCC1P33527 1531 aa19.2■□□□□ 0.66
RNF4-216ENST00000511859 ITSN2Q9NZM3 1697 aa19.19■□□□□ 0.66
RNF4-216ENST00000511859 PREX2Q70Z35 1606 aa19.19■□□□□ 0.66
RNF4-216ENST00000511859 PLA2R1Q13018 1463 aa19.18■□□□□ 0.66
RNF4-216ENST00000511859 LRRIQ1Q96JM4 1722 aa19.15■□□□□ 0.66
RNF4-216ENST00000511859 SUPT6HQ7KZ85 1726 aaKnown RBP19.14■□□□□ 0.65
RNF4-216ENST00000511859 TCOF1Q13428 1488 aaKnown RBP19.14■□□□□ 0.65
RNF4-216ENST00000511859 PPP6R1Q9UPN7 881 aa19.14■□□□□ 0.65
RNF4-216ENST00000511859 SPAG9O60271 1321 aaKnown RBP19.13■□□□□ 0.65
RNF4-216ENST00000511859 ZNF142P52746 1687 aaPredicted RBP19.13■□□□□ 0.65
RNF4-216ENST00000511859 TOM1O60784 492 aa19.12■□□□□ 0.65
RNF4-216ENST00000511859 SAMD9LQ8IVG5 1584 aa19.12■□□□□ 0.65
RNF4-216ENST00000511859 HSPA1LP34931 641 aa19.11■□□□□ 0.65
RNF4-216ENST00000511859 EHMT2Q96KQ7 1210 aa19.11■□□□□ 0.65
RNF4-216ENST00000511859 ZNF777Q9ULD5 760 aaPredicted RBP19.1■□□□□ 0.65
RNF4-216ENST00000511859 CDC42BPAQ5VT25 1732 aa19.1■□□□□ 0.65
RNF4-216ENST00000511859 PTPRKQ15262 1439 aa19.1■□□□□ 0.65
RNF4-216ENST00000511859 CEP170BQ9Y4F5 1589 aaPredicted RBP19.1■□□□□ 0.65
RNF4-216ENST00000511859 CLTCQ00610 1675 aaKnown RBP19.09■□□□□ 0.65
RNF4-216ENST00000511859 CCDC18Q5T9S5 1454 aa19.09■□□□□ 0.65
RNF4-216ENST00000511859 MYO3AQ8NEV4 1616 aa19.09■□□□□ 0.65
RNF4-216ENST00000511859 SCAF1Q9H7N4 1312 aaKnown RBP19.09■□□□□ 0.65
RNF4-216ENST00000511859 HNRNPMP52272 730 aaKnown RBP eCLIP19.07■□□□□ 0.646e-9■■■■■ 27.4
RNF4-216ENST00000511859 PIP4K2BP78356 416 aa19.07■□□□□ 0.64
RNF4-216ENST00000511859 GGT6Q6P531 493 aa19.07■□□□□ 0.64
RNF4-216ENST00000511859 MED1Q15648 1581 aaPredicted RBP19.06■□□□□ 0.64
RNF4-216ENST00000511859 CASKIN1Q8WXD9 1431 aa19.06■□□□□ 0.64
RNF4-216ENST00000511859 A2MP01023 1474 aa19.04■□□□□ 0.64
RNF4-216ENST00000511859 CPS1P31327 1500 aa19.03■□□□□ 0.64
RNF4-216ENST00000511859 KIAA1107Q9UPP5 1409 aa19.03■□□□□ 0.64
RNF4-216ENST00000511859 ATP7AQ04656 1500 aa19.02■□□□□ 0.64
RNF4-216ENST00000511859 SYCP2Q9BX26 1530 aa19.02■□□□□ 0.64
RNF4-216ENST00000511859 PLXNC1O60486 1568 aa19.02■□□□□ 0.64
RNF4-216ENST00000511859 A2ML1A8K2U0 1454 aa19.02■□□□□ 0.64
RNF4-216ENST00000511859 GPATCH8Q9UKJ3 1502 aaKnown RBP19.01■□□□□ 0.63
RNF4-216ENST00000511859 PHF23Q9BUL5 403 aaPredicted RBP19.01■□□□□ 0.63
RNF4-216ENST00000511859 PLEKHH2Q8IVE3 1493 aa19■□□□□ 0.63
RNF4-216ENST00000511859 DNMT1P26358 1616 aaKnown RBP19■□□□□ 0.63
RNF4-216ENST00000511859 CFDP1Q9UEE9 299 aaPredicted RBP18.99■□□□□ 0.63
RNF4-216ENST00000511859 SHANK2Q9UPX8 1470 aa18.99■□□□□ 0.63
RNF4-216ENST00000511859 INO80Q9ULG1 1556 aaPredicted RBP18.97■□□□□ 0.63
RNF4-216ENST00000511859 ANKLE2Q86XL3 938 aa18.96■□□□□ 0.63
RNF4-216ENST00000511859 POLR1AO95602 1720 aaPredicted RBP18.96■□□□□ 0.63
RNF4-216ENST00000511859 ADGBQ8N7X0 1667 aa18.95■□□□□ 0.62
RNF4-216ENST00000511859 THEMISQ8N1K5 641 aaPredicted RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms