RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, humanhuman

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-215ENST00000511843 PREX2Q70Z35 1606 aa21.37■■□□□ 1.01
RNF4-215ENST00000511843 ARHGEF40Q8TER5 1519 aa21.34■■□□□ 1.01
RNF4-215ENST00000511843 SCAPERQ9BY12 1400 aa21.34■■□□□ 1.01
RNF4-215ENST00000511843 EFCAB2Q5VUJ9 269 aa21.32■■□□□ 1
RNF4-215ENST00000511843 ZMYM4Q5VZL5 1548 aa21.32■■□□□ 1
RNF4-215ENST00000511843 POGZQ7Z3K3 1410 aa21.31■■□□□ 1
RNF4-215ENST00000511843 SIGLEC1Q9BZZ2 1709 aa21.3■■□□□ 1
RNF4-215ENST00000511843 ZFYVE16Q7Z3T8 1539 aa21.29■■□□□ 1
RNF4-215ENST00000511843 YEATS2Q9ULM3 1422 aa21.28■■□□□ 1
RNF4-215ENST00000511843 ITSN2Q9NZM3 1697 aa21.27■■□□□ 1
RNF4-215ENST00000511843 MTUS2Q5JR59 1369 aa21.26■□□□□ 0.99
RNF4-215ENST00000511843 BCORL1Q5H9F3 1711 aa21.26■□□□□ 0.99
RNF4-215ENST00000511843 ABCC1P33527 1531 aa21.24■□□□□ 0.99
RNF4-215ENST00000511843 ADAMTSL3P82987 1691 aa21.24■□□□□ 0.99
RNF4-215ENST00000511843 EHBP1L1Q8N3D4 1523 aa21.24■□□□□ 0.99
RNF4-215ENST00000511843 ARHGEF12Q9NZN5 1544 aa21.23■□□□□ 0.99
RNF4-215ENST00000511843 ARID4BQ4LE39 1312 aaPredicted RBP21.23■□□□□ 0.99
RNF4-215ENST00000511843 SAMD9LQ8IVG5 1584 aa21.23■□□□□ 0.99
RNF4-215ENST00000511843 VPS8Q8N3P4 1428 aa21.22■□□□□ 0.99
RNF4-215ENST00000511843 GPATCH8Q9UKJ3 1502 aaKnown RBP21.22■□□□□ 0.99
RNF4-215ENST00000511843 KDM5CP41229 1560 aa21.21■□□□□ 0.99
RNF4-215ENST00000511843 ZNF518AQ6AHZ1 1483 aa21.2■□□□□ 0.98
RNF4-215ENST00000511843 TIAM1Q13009 1591 aa21.2■□□□□ 0.98
RNF4-215ENST00000511843 MADDQ8WXG6 1647 aa21.2■□□□□ 0.98
RNF4-215ENST00000511843 AFAP1Q8N556 730 aa21.2■□□□□ 0.98
RNF4-215ENST00000511843 MAGI2Q86UL8 1455 aa21.2■□□□□ 0.98
RNF4-215ENST00000511843 ZNF777Q9ULD5 760 aaPredicted RBP21.19■□□□□ 0.98
RNF4-215ENST00000511843 TRAPPC8Q9Y2L5 1435 aa21.19■□□□□ 0.98
RNF4-215ENST00000511843 HECW2Q9P2P5 1572 aa21.19■□□□□ 0.98
RNF4-215ENST00000511843 CCNB3Q8WWL7 1395 aa21.17■□□□□ 0.98
RNF4-215ENST00000511843 SYCP2Q9BX26 1530 aa21.17■□□□□ 0.98
RNF4-215ENST00000511843 SUPT6HQ7KZ85 1726 aaKnown RBP21.16■□□□□ 0.98
RNF4-215ENST00000511843 RIMS1Q86UR5 1692 aaKnown RBP21.16■□□□□ 0.98
RNF4-215ENST00000511843 ABCA6Q8N139 1617 aa21.16■□□□□ 0.98
RNF4-215ENST00000511843 DIP2CQ9Y2E4 1556 aa21.14■□□□□ 0.98
RNF4-215ENST00000511843 KIDINS220Q9ULH0 1771 aa21.13■□□□□ 0.97
RNF4-215ENST00000511843 MYT1LQ9UL68 1186 aa21.13■□□□□ 0.97
RNF4-215ENST00000511843 ATP10AO60312 1499 aa21.13■□□□□ 0.97
RNF4-215ENST00000511843 CFDP1Q9UEE9 299 aaPredicted RBP21.12■□□□□ 0.97
RNF4-215ENST00000511843 PTPRMP28827 1452 aa21.11■□□□□ 0.97
RNF4-215ENST00000511843 NCOA2Q15596 1464 aa21.11■□□□□ 0.97
RNF4-215ENST00000511843 C9orf84Q5VXU9 1444 aa21.11■□□□□ 0.97
RNF4-215ENST00000511843 FER1L4A9Z1Z3 1794 aa21.1■□□□□ 0.97
RNF4-215ENST00000511843 MLECQ14165 292 aa21.1■□□□□ 0.97
RNF4-215ENST00000511843 HNRNPMP52272 730 aaKnown RBP eCLIP21.09■□□□□ 0.976e-9■■■■■ 27.4
RNF4-215ENST00000511843 ZNF644Q9H582 1327 aaPredicted RBP21.08■□□□□ 0.97
RNF4-215ENST00000511843 MLH3Q9UHC1 1453 aa21.08■□□□□ 0.97
RNF4-215ENST00000511843 LRRC9Q6ZRR7 1453 aa21.07■□□□□ 0.96
RNF4-215ENST00000511843 KANK4Q5T7N3 995 aaPredicted RBP21.04■□□□□ 0.96
RNF4-215ENST00000511843 PLEKHH2Q8IVE3 1493 aa21.04■□□□□ 0.96
RNF4-215ENST00000511843 INO80Q9ULG1 1556 aaPredicted RBP21.03■□□□□ 0.96
RNF4-215ENST00000511843 KIAA1107Q9UPP5 1409 aa21.03■□□□□ 0.96
RNF4-215ENST00000511843 REREQ9P2R6 1566 aa21.02■□□□□ 0.96
RNF4-215ENST00000511843 PLPPR3Q6T4P5 718 aa21.02■□□□□ 0.96
RNF4-215ENST00000511843 ATP7AQ04656 1500 aa21.02■□□□□ 0.96
RNF4-215ENST00000511843 MAP3K1Q13233 1512 aa21.02■□□□□ 0.96
RNF4-215ENST00000511843 SPAG9O60271 1321 aaKnown RBP21■□□□□ 0.95
RNF4-215ENST00000511843 CAMSAP2Q08AD1 1489 aa21■□□□□ 0.95
RNF4-215ENST00000511843 MBD5Q9P267 1494 aa20.98■□□□□ 0.95
RNF4-215ENST00000511843 AGLP35573 1532 aa20.94■□□□□ 0.94
RNF4-215ENST00000511843 ADGBQ8N7X0 1667 aa20.94■□□□□ 0.94
RNF4-215ENST00000511843 PLXNC1O60486 1568 aa20.91■□□□□ 0.94
RNF4-215ENST00000511843 APLP2Q06481 763 aa20.91■□□□□ 0.94
RNF4-215ENST00000511843 CCDC141Q6ZP82 1450 aa20.9■□□□□ 0.94
RNF4-215ENST00000511843 A2MP01023 1474 aa20.89■□□□□ 0.94
RNF4-215ENST00000511843 MYOM3Q5VTT5 1437 aa20.89■□□□□ 0.94
RNF4-215ENST00000511843 C3P01024 1663 aa20.89■□□□□ 0.93
RNF4-215ENST00000511843 ARHGEF5Q12774 1597 aa20.89■□□□□ 0.93
RNF4-215ENST00000511843 CEBPAP49715 358 aaPredicted RBP20.88■□□□□ 0.93
RNF4-215ENST00000511843 LMTK3Q96Q04 1460 aa20.88■□□□□ 0.93
RNF4-215ENST00000511843 CLTCQ00610 1675 aaKnown RBP20.84■□□□□ 0.93
RNF4-215ENST00000511843 RTEL1-TNFRSF6BF6WH68 1400 aa20.84■□□□□ 0.93
RNF4-215ENST00000511843 PREX1Q8TCU6 1659 aa20.83■□□□□ 0.92
RNF4-215ENST00000511843 PTPN23Q9H3S7 1636 aa20.82■□□□□ 0.92
RNF4-215ENST00000511843 MIA2Q96PC5 1412 aa20.81■□□□□ 0.92
RNF4-215ENST00000511843 MROH2AA6NES4 1674 aa20.8■□□□□ 0.92
RNF4-215ENST00000511843 CROCC2H7BZ55 1655 aa20.8■□□□□ 0.92
RNF4-215ENST00000511843 HSPA2P54652 639 aa20.79■□□□□ 0.92
RNF4-215ENST00000511843 ESF1Q9H501 851 aaKnown RBP20.79■□□□□ 0.92
RNF4-215ENST00000511843 MAST1Q9Y2H9 1570 aa20.78■□□□□ 0.92
RNF4-215ENST00000511843 RSPH4AQ5TD94 716 aa20.77■□□□□ 0.92
RNF4-215ENST00000511843 GGT6Q6P531 493 aa20.77■□□□□ 0.92
RNF4-215ENST00000511843 SETD1BQ9UPS6 1966 aaKnown RBP20.76■□□□□ 0.91
RNF4-215ENST00000511843 DHX29Q7Z478 1369 aaKnown RBP20.75■□□□□ 0.91
RNF4-215ENST00000511843 TSPY4P0CV99 314 aa20.75■□□□□ 0.91
RNF4-215ENST00000511843 TSPY10P0CW01 314 aa20.75■□□□□ 0.91
RNF4-215ENST00000511843 FGD6Q6ZV73 1430 aa20.75■□□□□ 0.91
RNF4-215ENST00000511843 CNTLNQ9NXG0 1405 aa20.75■□□□□ 0.91
RNF4-215ENST00000511843 DNMT1P26358 1616 aaKnown RBP20.72■□□□□ 0.91
RNF4-215ENST00000511843 TCOF1Q13428 1488 aaKnown RBP20.71■□□□□ 0.91
RNF4-215ENST00000511843 KIF3BO15066 747 aa20.71■□□□□ 0.91
RNF4-215ENST00000511843 ZMYM3Q14202 1370 aa20.7■□□□□ 0.9
RNF4-215ENST00000511843 ABCC5O15440 1437 aa20.7■□□□□ 0.9
RNF4-215ENST00000511843 PPARGC1BQ86YN6 1023 aaKnown RBP20.68■□□□□ 0.9
RNF4-215ENST00000511843 DAPK1P53355 1430 aa20.68■□□□□ 0.9
RNF4-215ENST00000511843 UHRF1BP1Q6BDS2 1440 aa20.68■□□□□ 0.9
RNF4-215ENST00000511843 RNF17Q9BXT8 1623 aaKnown RBP20.66■□□□□ 0.9
RNF4-215ENST00000511843 STRCQ7RTU9 1775 aa20.65■□□□□ 0.9
RNF4-215ENST00000511843 EIF2AK4Q9P2K8 1649 aaKnown RBP20.65■□□□□ 0.9
RNF4-215ENST00000511843 SHANK2Q9UPX8 1470 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms