RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 MARVELD3Q96A59 401 aa15.48■□□□□ 0.07
NUP54-209ENST00000510569 RYDENQ9NUL5 291 aaKnown RBP15.48■□□□□ 0.07
NUP54-209ENST00000510569 DCAF8L2P0C7V8 631 aa15.46■□□□□ 0.07
NUP54-209ENST00000510569 C2orf72A6NCS6 295 aa15.45■□□□□ 0.06
NUP54-209ENST00000510569 ZNF710Q8N1W2 664 aa15.44■□□□□ 0.06
NUP54-209ENST00000510569 HOXB1P14653 301 aaPredicted RBP15.43■□□□□ 0.06
NUP54-209ENST00000510569 EMP3P54852 163 aa15.43■□□□□ 0.06
NUP54-209ENST00000510569 RIMBP2O15034 1052 aa15.42■□□□□ 0.06
NUP54-209ENST00000510569 ZSWIM6Q9HCJ5 1215 aa15.42■□□□□ 0.06
NUP54-209ENST00000510569 CDAN1Q8IWY9 1227 aa15.4■□□□□ 0.06
NUP54-209ENST00000510569 TMC2Q8TDI7 906 aa15.38■□□□□ 0.05
NUP54-209ENST00000510569 RTN4Q9NQC3 1192 aaKnown RBP15.38■□□□□ 0.05
NUP54-209ENST00000510569 GTPBP6O43824 516 aaPredicted RBP15.36■□□□□ 0.05
NUP54-209ENST00000510569 GPR153Q6NV75 609 aa15.34■□□□□ 0.05
NUP54-209ENST00000510569 POTEB3A0JP26 581 aa15.31■□□□□ 0.04
NUP54-209ENST00000510569 POTEBQ6S5H4 581 aa15.31■□□□□ 0.04
NUP54-209ENST00000510569 HS3ST6Q96QI5 342 aa15.31■□□□□ 0.04
NUP54-209ENST00000510569 FAM205CA6NFA0 338 aa15.3■□□□□ 0.04
NUP54-209ENST00000510569 SLC34A2O95436 690 aa15.29■□□□□ 0.04
NUP54-209ENST00000510569 GPHNQ9NQX3 736 aaPredicted RBP15.29■□□□□ 0.04
NUP54-209ENST00000510569 PLSCR2Q9NRY7 297 aa15.28■□□□□ 0.04
NUP54-209ENST00000510569 FOXK1P85037 733 aa15.27■□□□□ 0.04
NUP54-209ENST00000510569 ARSIQ5FYB1 569 aa15.24■□□□□ 0.03
NUP54-209ENST00000510569 CRISPLD2Q9H0B8 497 aa15.23■□□□□ 0.03
NUP54-209ENST00000510569 ERBB3P21860 1342 aa15.22■□□□□ 0.03
NUP54-209ENST00000510569 DSG2Q14126 1118 aa15.2■□□□□ 0.02
NUP54-209ENST00000510569 PLPP6Q8IY26 295 aa15.19■□□□□ 0.02
NUP54-209ENST00000510569 BBXQ8WY36 941 aaPredicted RBP15.19■□□□□ 0.02
NUP54-209ENST00000510569 KHSRPQ92945 711 aaKnown RBP eCLIP15.18■□□□□ 0.022e-6■■□□□ 14.4
NUP54-209ENST00000510569 PCDHGA4Q9Y5G9 962 aa15.18■□□□□ 0.02
NUP54-209ENST00000510569 VARS2Q5ST30 1063 aaKnown RBP15.16■□□□□ 0.02
NUP54-209ENST00000510569 KRTAP3-3Q9BYR6 98 aa15.16■□□□□ 0.02
NUP54-209ENST00000510569 KRTAP3-2Q9BYR7 98 aa15.16■□□□□ 0.02
NUP54-209ENST00000510569 NCKAP5LQ9HCH0 1330 aa15.16■□□□□ 0.02
NUP54-209ENST00000510569 PTCD2Q8WV60 388 aaKnown RBP15.15■□□□□ 0.02
NUP54-209ENST00000510569 ZNF316A6NFI3 1004 aaPredicted RBP15.12■□□□□ 0.01
NUP54-209ENST00000510569 NUDT7P0C024 238 aa15.11■□□□□ 0.01
NUP54-209ENST00000510569 PDE4AP27815 886 aa15.1■□□□□ 0.01
NUP54-209ENST00000510569 PPP1R15BQ5SWA1 713 aa15.09■□□□□ 0.01
NUP54-209ENST00000510569 KDM4FA0A1W2PPD8 638 aa15.08■□□□□ 0
NUP54-209ENST00000510569 ZNF687Q8N1G0 1237 aa15.07■□□□□ 0
NUP54-209ENST00000510569 MFSD10Q14728 455 aa15.05■□□□□ -0
NUP54-209ENST00000510569 CADPS2Q86UW7 1296 aa15.04■□□□□ -0
NUP54-209ENST00000510569 SPNS2Q8IVW8 549 aa15.03■□□□□ -0
NUP54-209ENST00000510569 LHX6Q9UPM6 363 aa15.03■□□□□ -0
NUP54-209ENST00000510569 OXER1Q8TDS5 423 aa15.02■□□□□ -0
NUP54-209ENST00000510569 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.02■□□□□ -0
NUP54-209ENST00000510569 DDX27Q96GQ7 796 aaKnown RBP15.01□□□□□ -0.01
NUP54-209ENST00000510569 LARP6Q9BRS8 491 aaKnown RBP15.01□□□□□ -0.01
NUP54-209ENST00000510569 TBC1D12O60347 775 aa14.99□□□□□ -0.01
NUP54-209ENST00000510569 SPRYD3Q8NCJ5 442 aa14.99□□□□□ -0.01
NUP54-209ENST00000510569 PSDA5PKW4 1024 aaPredicted RBP14.95□□□□□ -0.02
NUP54-209ENST00000510569 MMRN1Q13201 1228 aa14.94□□□□□ -0.02
NUP54-209ENST00000510569 UPF1Q92900 1129 aaKnown RBP eCLIP14.94□□□□□ -0.02
NUP54-209ENST00000510569 PBX2P40425 430 aa14.91□□□□□ -0.02
NUP54-209ENST00000510569 POTEEQ6S8J3 1075 aa14.88□□□□□ -0.03
NUP54-209ENST00000510569 PAXIP1Q6ZW49 1069 aaPredicted RBP14.88□□□□□ -0.03
NUP54-209ENST00000510569 EMILIN3Q9NT22 766 aa14.86□□□□□ -0.03
NUP54-209ENST00000510569 LSM11P83369 360 aaKnown RBP eCLIP14.84□□□□□ -0.03
NUP54-209ENST00000510569 CAMK2BQ13554 666 aa14.84□□□□□ -0.03
NUP54-209ENST00000510569 CFAP44Q96MT7 982 aa14.84□□□□□ -0.03
NUP54-209ENST00000510569 PPP4R3BQ5MIZ7 849 aa14.82□□□□□ -0.04
NUP54-209ENST00000510569 ANO8Q9HCE9 1232 aaPredicted RBP14.82□□□□□ -0.04
NUP54-209ENST00000510569 EVI5O60447 810 aa14.79□□□□□ -0.04
NUP54-209ENST00000510569 AXIN2Q9Y2T1 843 aa14.79□□□□□ -0.04
NUP54-209ENST00000510569 ARHGAP33O14559 1287 aa14.77□□□□□ -0.05
NUP54-209ENST00000510569 PTGER2P43116 358 aa14.77□□□□□ -0.05
NUP54-209ENST00000510569 MAP3K9P80192 1104 aa14.77□□□□□ -0.05
NUP54-209ENST00000510569 ANKRD13DQ6ZTN6 518 aa14.76□□□□□ -0.05
NUP54-209ENST00000510569 FOSBP53539 338 aa14.75□□□□□ -0.05
NUP54-209ENST00000510569 ZNF454Q8N9F8 522 aa14.74□□□□□ -0.05
NUP54-209ENST00000510569 JPH4Q96JJ6 628 aa14.73□□□□□ -0.05
NUP54-209ENST00000510569 MYT1LQ9UL68 1186 aa14.71□□□□□ -0.05
NUP54-209ENST00000510569 BCL2L12Q9HB09 334 aa14.7□□□□□ -0.06
NUP54-209ENST00000510569 PSEN2P49810 448 aa14.69□□□□□ -0.06
NUP54-209ENST00000510569 DMRTA1Q5VZB9 504 aa14.67□□□□□ -0.06
NUP54-209ENST00000510569 RNF166Q96A37 237 aaPredicted RBP14.67□□□□□ -0.06
NUP54-209ENST00000510569 TK2O00142 265 aa14.66□□□□□ -0.06
NUP54-209ENST00000510569 DPYSL4O14531 572 aa14.66□□□□□ -0.06
NUP54-209ENST00000510569 ADGRD1Q6QNK2 874 aa14.66□□□□□ -0.06
NUP54-209ENST00000510569 KCNK17Q96T54 332 aa14.66□□□□□ -0.06
NUP54-209ENST00000510569 KCNH8Q96L42 1107 aa14.64□□□□□ -0.07
NUP54-209ENST00000510569 ZDHHC16Q969W1 377 aa14.63□□□□□ -0.07
NUP54-209ENST00000510569 E2F4Q16254 413 aa14.61□□□□□ -0.07
NUP54-209ENST00000510569 PCDHGA10Q9Y5H3 936 aa14.61□□□□□ -0.07
NUP54-209ENST00000510569 ADAM33Q9BZ11 813 aa14.6□□□□□ -0.07
NUP54-209ENST00000510569 HRO43593 1189 aa14.59□□□□□ -0.07
NUP54-209ENST00000510569 PHF14O94880 888 aa14.59□□□□□ -0.07
NUP54-209ENST00000510569 PTPREP23469 700 aa14.59□□□□□ -0.07
NUP54-209ENST00000510569 WDR70Q9NW82 654 aa14.59□□□□□ -0.07
NUP54-209ENST00000510569 ARIH1Q9Y4X5 557 aaPredicted RBP14.59□□□□□ -0.07
NUP54-209ENST00000510569 PDIA6Q15084 440 aa14.58□□□□□ -0.08
NUP54-209ENST00000510569 SLC4A5Q9BY07 1137 aa14.57□□□□□ -0.08
NUP54-209ENST00000510569 TSHZ2Q9NRE2 1034 aa14.57□□□□□ -0.08
NUP54-209ENST00000510569 FBXW7Q969H0 707 aa14.56□□□□□ -0.08
NUP54-209ENST00000510569 TYW1BQ6NUM6 668 aa14.55□□□□□ -0.08
NUP54-209ENST00000510569 VPS9D1Q9Y2B5 631 aa14.54□□□□□ -0.08
NUP54-209ENST00000510569 SPDYE16A6NNV3 312 aaPredicted RBP14.53□□□□□ -0.08
NUP54-209ENST00000510569 EPAS1Q99814 870 aa14.52□□□□□ -0.09
NUP54-209ENST00000510569 ZBED2Q9BTP6 218 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms