RNA–Protein interactions for RNA: ENST00000509258.5

RNF4-212, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-212ENST00000509258 ATP1B4Q9UN42 357 aaPredicted RBP17.91■□□□□ 0.46
RNF4-212ENST00000509258 SIGLEC1Q9BZZ2 1709 aa17.91■□□□□ 0.46
RNF4-212ENST00000509258 RIMS1Q86UR5 1692 aaKnown RBP17.9■□□□□ 0.46
RNF4-212ENST00000509258 YEATS2Q9ULM3 1422 aa17.89■□□□□ 0.46
RNF4-212ENST00000509258 LMTK3Q96Q04 1460 aa17.89■□□□□ 0.45
RNF4-212ENST00000509258 CDK11AQ9UQ88 783 aaPredicted RBP17.88■□□□□ 0.45
RNF4-212ENST00000509258 SCAPERQ9BY12 1400 aa17.88■□□□□ 0.45
RNF4-212ENST00000509258 CDC42BPBQ9Y5S2 1711 aa17.86■□□□□ 0.45
RNF4-212ENST00000509258 CASKIN1Q8WXD9 1431 aa17.86■□□□□ 0.45
RNF4-212ENST00000509258 TROQ12816 1431 aaPredicted RBP17.85■□□□□ 0.45
RNF4-212ENST00000509258 CLIP1P30622 1438 aa17.83■□□□□ 0.45
RNF4-212ENST00000509258 EFCAB2Q5VUJ9 269 aa17.83■□□□□ 0.44
RNF4-212ENST00000509258 ZNF518AQ6AHZ1 1483 aa17.81■□□□□ 0.44
RNF4-212ENST00000509258 CDC42BPAQ5VT25 1732 aa17.81■□□□□ 0.44
RNF4-212ENST00000509258 C9orf84Q5VXU9 1444 aa17.81■□□□□ 0.44
RNF4-212ENST00000509258 FBXO41Q8TF61 875 aa17.8■□□□□ 0.44
RNF4-212ENST00000509258 ARHGAP5Q13017 1502 aa17.8■□□□□ 0.44
RNF4-212ENST00000509258 ATP10AO60312 1499 aa17.8■□□□□ 0.44
RNF4-212ENST00000509258 FYCO1Q9BQS8 1478 aa17.8■□□□□ 0.44
RNF4-212ENST00000509258 PREX2Q70Z35 1606 aa17.8■□□□□ 0.44
RNF4-212ENST00000509258 FER1L4A9Z1Z3 1794 aa17.79■□□□□ 0.44
RNF4-212ENST00000509258 CCDC18Q5T9S5 1454 aa17.78■□□□□ 0.44
RNF4-212ENST00000509258 ARHGEF12Q9NZN5 1544 aa17.77■□□□□ 0.44
RNF4-212ENST00000509258 MLECQ14165 292 aa17.77■□□□□ 0.44
RNF4-212ENST00000509258 KDM5CP41229 1560 aa17.77■□□□□ 0.44
RNF4-212ENST00000509258 PLPPR3Q6T4P5 718 aa17.75■□□□□ 0.43
RNF4-212ENST00000509258 ITSN2Q9NZM3 1697 aa17.74■□□□□ 0.43
RNF4-212ENST00000509258 HSPA2P54652 639 aa17.73■□□□□ 0.43
RNF4-212ENST00000509258 ABCC1P33527 1531 aa17.71■□□□□ 0.43
RNF4-212ENST00000509258 CEP162Q5TB80 1403 aa17.71■□□□□ 0.43
RNF4-212ENST00000509258 REREQ9P2R6 1566 aa17.7■□□□□ 0.42
RNF4-212ENST00000509258 DIP2CQ9Y2E4 1556 aa17.7■□□□□ 0.42
RNF4-212ENST00000509258 AFAP1Q8N556 730 aa17.7■□□□□ 0.42
RNF4-212ENST00000509258 MLH3Q9UHC1 1453 aa17.69■□□□□ 0.42
RNF4-212ENST00000509258 SAMD9LQ8IVG5 1584 aa17.68■□□□□ 0.42
RNF4-212ENST00000509258 MYT1LQ9UL68 1186 aa17.68■□□□□ 0.42
RNF4-212ENST00000509258 ABCA6Q8N139 1617 aa17.68■□□□□ 0.42
RNF4-212ENST00000509258 PREX1Q8TCU6 1659 aa17.67■□□□□ 0.42
RNF4-212ENST00000509258 TRAPPC8Q9Y2L5 1435 aa17.67■□□□□ 0.42
RNF4-212ENST00000509258 LOC105371045A0A1W2PR82 267 aa17.66■□□□□ 0.42
RNF4-212ENST00000509258 GPATCH8Q9UKJ3 1502 aaKnown RBP17.65■□□□□ 0.42
RNF4-212ENST00000509258 KIDINS220Q9ULH0 1771 aa17.65■□□□□ 0.42
RNF4-212ENST00000509258 AGLP35573 1532 aa17.63■□□□□ 0.41
RNF4-212ENST00000509258 CEBPAP49715 358 aaPredicted RBP17.62■□□□□ 0.41
RNF4-212ENST00000509258 UHRF1BP1Q6BDS2 1440 aa17.62■□□□□ 0.41
RNF4-212ENST00000509258 SYCP2Q9BX26 1530 aa17.61■□□□□ 0.41
RNF4-212ENST00000509258 TIAM1Q13009 1591 aa17.61■□□□□ 0.41
RNF4-212ENST00000509258 ESF1Q9H501 851 aaKnown RBP17.58■□□□□ 0.4
RNF4-212ENST00000509258 EHBP1L1Q8N3D4 1523 aa17.57■□□□□ 0.4
RNF4-212ENST00000509258 CERKQ8TCT0 537 aa17.57■□□□□ 0.4
RNF4-212ENST00000509258 CNTLNQ9NXG0 1405 aa17.56■□□□□ 0.4
RNF4-212ENST00000509258 C3P01024 1663 aa17.56■□□□□ 0.4
RNF4-212ENST00000509258 MTUS2Q5JR59 1369 aa17.55■□□□□ 0.4
RNF4-212ENST00000509258 DMRT2Q9Y5R5 561 aa17.55■□□□□ 0.4
RNF4-212ENST00000509258 SETD1BQ9UPS6 1966 aaKnown RBP17.55■□□□□ 0.4
RNF4-212ENST00000509258 ZNF777Q9ULD5 760 aaPredicted RBP17.54■□□□□ 0.4
RNF4-212ENST00000509258 PLEKHH2Q8IVE3 1493 aa17.53■□□□□ 0.4
RNF4-212ENST00000509258 INO80Q9ULG1 1556 aaPredicted RBP17.53■□□□□ 0.4
RNF4-212ENST00000509258 HNRNPMP52272 730 aaKnown RBP eCLIP17.52■□□□□ 0.46e-9■■■■■ 27.4
RNF4-212ENST00000509258 STRCQ7RTU9 1775 aa17.52■□□□□ 0.4
RNF4-212ENST00000509258 KIAA1107Q9UPP5 1409 aa17.52■□□□□ 0.4
RNF4-212ENST00000509258 SUPT6HQ7KZ85 1726 aaKnown RBP17.52■□□□□ 0.39
RNF4-212ENST00000509258 CCNB3Q8WWL7 1395 aa17.52■□□□□ 0.39
RNF4-212ENST00000509258 SPAG9O60271 1321 aaKnown RBP17.51■□□□□ 0.39
RNF4-212ENST00000509258 ZNF644Q9H582 1327 aaPredicted RBP17.51■□□□□ 0.39
RNF4-212ENST00000509258 ATP7AQ04656 1500 aa17.51■□□□□ 0.39
RNF4-212ENST00000509258 VPS8Q8N3P4 1428 aa17.49■□□□□ 0.39
RNF4-212ENST00000509258 CFDP1Q9UEE9 299 aaPredicted RBP17.49■□□□□ 0.39
RNF4-212ENST00000509258 NCOA2Q15596 1464 aa17.49■□□□□ 0.39
RNF4-212ENST00000509258 MROH2AA6NES4 1674 aa17.48■□□□□ 0.39
RNF4-212ENST00000509258 PLXNC1O60486 1568 aa17.48■□□□□ 0.39
RNF4-212ENST00000509258 PTPRTO14522 1441 aa17.47■□□□□ 0.39
RNF4-212ENST00000509258 NPATQ14207 1427 aa17.47■□□□□ 0.39
RNF4-212ENST00000509258 MBD5Q9P267 1494 aa17.47■□□□□ 0.39
RNF4-212ENST00000509258 ADGBQ8N7X0 1667 aa17.45■□□□□ 0.38
RNF4-212ENST00000509258 A2MP01023 1474 aa17.45■□□□□ 0.38
RNF4-212ENST00000509258 NCOA1Q15788 1441 aa17.45■□□□□ 0.38
RNF4-212ENST00000509258 ZMYM3Q14202 1370 aa17.43■□□□□ 0.38
RNF4-212ENST00000509258 LRRC9Q6ZRR7 1453 aa17.43■□□□□ 0.38
RNF4-212ENST00000509258 CAMSAP2Q08AD1 1489 aa17.42■□□□□ 0.38
RNF4-212ENST00000509258 CLTCQ00610 1675 aaKnown RBP17.4■□□□□ 0.38
RNF4-212ENST00000509258 KANK4Q5T7N3 995 aaPredicted RBP17.4■□□□□ 0.38
RNF4-212ENST00000509258 CAMSAP1Q5T5Y3 1602 aa17.39■□□□□ 0.37
RNF4-212ENST00000509258 MYO3AQ8NEV4 1616 aa17.38■□□□□ 0.37
RNF4-212ENST00000509258 ZNF142P52746 1687 aaPredicted RBP17.37■□□□□ 0.37
RNF4-212ENST00000509258 PTPRKQ15262 1439 aa17.37■□□□□ 0.37
RNF4-212ENST00000509258 MAP3K1Q13233 1512 aa17.37■□□□□ 0.37
RNF4-212ENST00000509258 LTBP4Q8N2S1 1624 aa17.36■□□□□ 0.37
RNF4-212ENST00000509258 GGT6Q6P531 493 aa17.36■□□□□ 0.37
RNF4-212ENST00000509258 PPP6R1Q9UPN7 881 aa17.36■□□□□ 0.37
RNF4-212ENST00000509258 RTEL1-TNFRSF6BF6WH68 1400 aa17.36■□□□□ 0.37
RNF4-212ENST00000509258 IQSEC2Q5JU85 1478 aa17.36■□□□□ 0.37
RNF4-212ENST00000509258 PLA2R1Q13018 1463 aa17.35■□□□□ 0.37
RNF4-212ENST00000509258 ARHGEF5Q12774 1597 aa17.35■□□□□ 0.37
RNF4-212ENST00000509258 CEP170BQ9Y4F5 1589 aaPredicted RBP17.35■□□□□ 0.37
RNF4-212ENST00000509258 CCDC141Q6ZP82 1450 aa17.34■□□□□ 0.37
RNF4-212ENST00000509258 DHX29Q7Z478 1369 aaKnown RBP17.3■□□□□ 0.36
RNF4-212ENST00000509258 FAM135AQ9P2D6 1515 aa17.3■□□□□ 0.36
RNF4-212ENST00000509258 TCOF1Q13428 1488 aaKnown RBP17.3■□□□□ 0.36
RNF4-212ENST00000509258 PKD2Q13563 968 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms