RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 RASEFQ8IZ41 740 aa8.06□□□□□ -1.12
NIPBL-204ENST00000504430 BRD2P25440 801 aaKnown RBP8.05□□□□□ -1.12
NIPBL-204ENST00000504430 HMGB1P09429 215 aaKnown RBP8.05□□□□□ -1.12
NIPBL-204ENST00000504430 CARNS1A5YM72 827 aa8.04□□□□□ -1.12
NIPBL-204ENST00000504430 MFRPQ9BY79 579 aa8.04□□□□□ -1.12
NIPBL-204ENST00000504430 TRAIPQ9BWF2 469 aa8.04□□□□□ -1.12
NIPBL-204ENST00000504430 FBXW7Q969H0 707 aa8.02□□□□□ -1.12
NIPBL-204ENST00000504430 FAM177A1Q8N128 213 aaPredicted RBP8.02□□□□□ -1.13
NIPBL-204ENST00000504430 NCKAP5LQ9HCH0 1330 aa8.01□□□□□ -1.13
NIPBL-204ENST00000504430 FAM212AQ96EL1 285 aa8□□□□□ -1.13
NIPBL-204ENST00000504430 FLIIQ13045 1269 aa8□□□□□ -1.13
NIPBL-204ENST00000504430 LARP6Q9BRS8 491 aaKnown RBP7.99□□□□□ -1.13
NIPBL-204ENST00000504430 MCM6Q14566 821 aa7.98□□□□□ -1.13
NIPBL-204ENST00000504430 PARP9Q8IXQ6 854 aa7.98□□□□□ -1.13
NIPBL-204ENST00000504430 SPDYE2BA6NHP3 402 aa7.98□□□□□ -1.13
NIPBL-204ENST00000504430 SPDYE6P0CI01 402 aa7.98□□□□□ -1.13
NIPBL-204ENST00000504430 SPDYE2Q495Y8 402 aa7.98□□□□□ -1.13
NIPBL-204ENST00000504430 CCDC97Q96F63 343 aaPredicted RBP7.97□□□□□ -1.13
NIPBL-204ENST00000504430 A6NJR5 290 aa7.96□□□□□ -1.14
NIPBL-204ENST00000504430 E9PSI1 815 aa7.96□□□□□ -1.14
NIPBL-204ENST00000504430 PDE4CQ08493 712 aa7.95□□□□□ -1.14
NIPBL-204ENST00000504430 SMYD5Q6GMV2 418 aa7.95□□□□□ -1.14
NIPBL-204ENST00000504430 PROSER2Q86WR7 435 aaPredicted RBP7.95□□□□□ -1.14
NIPBL-204ENST00000504430 IRX6P78412 446 aaPredicted RBP7.94□□□□□ -1.14
NIPBL-204ENST00000504430 CWC22Q9HCG8 908 aaKnown RBP7.94□□□□□ -1.14
NIPBL-204ENST00000504430 SGIP1Q9BQI5 828 aa7.94□□□□□ -1.14
NIPBL-204ENST00000504430 ZBTB12Q9Y330 459 aaPredicted RBP7.93□□□□□ -1.14
NIPBL-204ENST00000504430 PCDHB8Q9UN66 801 aa7.93□□□□□ -1.14
NIPBL-204ENST00000504430 PCDHB13Q9Y5F0 798 aa7.93□□□□□ -1.14
NIPBL-204ENST00000504430 CCDC102AQ96A19 550 aa7.92□□□□□ -1.14
NIPBL-204ENST00000504430 FECHP22830 423 aa7.91□□□□□ -1.14
NIPBL-204ENST00000504430 FNBP4Q8N3X1 1017 aaPredicted RBP7.91□□□□□ -1.14
NIPBL-204ENST00000504430 BRPF3Q9ULD4 1205 aa7.91□□□□□ -1.14
NIPBL-204ENST00000504430 MNX1P50219 401 aaPredicted RBP7.9□□□□□ -1.14
NIPBL-204ENST00000504430 DDRGK1Q96HY6 314 aa7.9□□□□□ -1.14
NIPBL-204ENST00000504430 GPR37O15354 613 aa7.9□□□□□ -1.15
NIPBL-204ENST00000504430 TTLL12Q14166 644 aaPredicted RBP7.88□□□□□ -1.15
NIPBL-204ENST00000504430 PPM1GO15355 546 aaPredicted RBP7.88□□□□□ -1.15
NIPBL-204ENST00000504430 MS4A1P11836 297 aa7.88□□□□□ -1.15
NIPBL-204ENST00000504430 PLSCR2Q9NRY7 297 aa7.88□□□□□ -1.15
NIPBL-204ENST00000504430 PHF8Q9UPP1 1060 aa7.88□□□□□ -1.15
NIPBL-204ENST00000504430 CHRM1P11229 460 aaPredicted RBP7.87□□□□□ -1.15
NIPBL-204ENST00000504430 MYT1LQ9UL68 1186 aa7.87□□□□□ -1.15
NIPBL-204ENST00000504430 REPIN1Q9BWE0 567 aaKnown RBP7.87□□□□□ -1.15
NIPBL-204ENST00000504430 SERPINA10Q9UK55 444 aa7.87□□□□□ -1.15
NIPBL-204ENST00000504430 UNCXA6NJT0 531 aa7.86□□□□□ -1.15
NIPBL-204ENST00000504430 ATP1B4Q9UN42 357 aaPredicted RBP7.86□□□□□ -1.15
NIPBL-204ENST00000504430 TMED8Q6PL24 325 aaPredicted RBP7.85□□□□□ -1.15
NIPBL-204ENST00000504430 EFCAB3Q8N7B9 438 aa7.84□□□□□ -1.15
NIPBL-204ENST00000504430 DPYSL4O14531 572 aa7.83□□□□□ -1.16
NIPBL-204ENST00000504430 PROCA1Q8NCQ7 364 aaPredicted RBP7.83□□□□□ -1.16
NIPBL-204ENST00000504430 FBXO22Q8NEZ5 403 aa7.83□□□□□ -1.16
NIPBL-204ENST00000504430 DDX27Q96GQ7 796 aaKnown RBP7.83□□□□□ -1.16
NIPBL-204ENST00000504430 TAF7LQ5H9L4 462 aa7.83□□□□□ -1.16
NIPBL-204ENST00000504430 RFX1P22670 979 aa7.82□□□□□ -1.16
NIPBL-204ENST00000504430 CERS3Q8IU89 383 aa7.82□□□□□ -1.16
NIPBL-204ENST00000504430 CREBZFQ9NS37 354 aa7.82□□□□□ -1.16
NIPBL-204ENST00000504430 ZNF592Q92610 1267 aa7.81□□□□□ -1.16
NIPBL-204ENST00000504430 COG6Q9Y2V7 657 aa7.81□□□□□ -1.16
NIPBL-204ENST00000504430 ZNF330Q9Y3S2 320 aaPredicted RBP7.8□□□□□ -1.16
NIPBL-204ENST00000504430 SNRKQ9NRH2 765 aa7.8□□□□□ -1.16
NIPBL-204ENST00000504430 NUTM2FA1L443 756 aa7.8□□□□□ -1.16
NIPBL-204ENST00000504430 IRF6O14896 467 aa7.8□□□□□ -1.16
NIPBL-204ENST00000504430 GIGYF2Q6Y7W6 1299 aaKnown RBP7.8□□□□□ -1.16
NIPBL-204ENST00000504430 POLR3EQ9NVU0 708 aa7.8□□□□□ -1.16
NIPBL-204ENST00000504430 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.79□□□□□ -1.16
NIPBL-204ENST00000504430 FBXO31Q5XUX0 539 aaPredicted RBP7.79□□□□□ -1.16
NIPBL-204ENST00000504430 TSPYL2Q9H2G4 693 aaPredicted RBP7.79□□□□□ -1.16
NIPBL-204ENST00000504430 PCMTD1Q96MG8 357 aaPredicted RBP7.79□□□□□ -1.16
NIPBL-204ENST00000504430 POM121CA8CG34 1229 aa7.79□□□□□ -1.16
NIPBL-204ENST00000504430 CABP2Q9NPB3 220 aa7.78□□□□□ -1.16
NIPBL-204ENST00000504430 ARIH1Q9Y4X5 557 aaPredicted RBP7.78□□□□□ -1.16
NIPBL-204ENST00000504430 RSPH4AQ5TD94 716 aa7.77□□□□□ -1.16
NIPBL-204ENST00000504430 AMHR2Q16671 573 aa7.77□□□□□ -1.17
NIPBL-204ENST00000504430 CRISPLD2Q9H0B8 497 aa7.77□□□□□ -1.17
NIPBL-204ENST00000504430 CLEC11AQ9Y240 323 aa7.77□□□□□ -1.17
NIPBL-204ENST00000504430 PDAP1Q13442 181 aaKnown RBP7.77□□□□□ -1.17
NIPBL-204ENST00000504430 CCDC27Q2M243 656 aa7.77□□□□□ -1.17
NIPBL-204ENST00000504430 EMILIN3Q9NT22 766 aa7.77□□□□□ -1.17
NIPBL-204ENST00000504430 IVNS1ABPQ9Y6Y0 642 aa7.77□□□□□ -1.17
NIPBL-204ENST00000504430 GRXCR2A6NFK2 248 aa7.76□□□□□ -1.17
NIPBL-204ENST00000504430 KDM4AO75164 1064 aa7.76□□□□□ -1.17
NIPBL-204ENST00000504430 BCL11AQ9H165 835 aa7.76□□□□□ -1.17
NIPBL-204ENST00000504430 GDPD2Q9HCC8 539 aa7.76□□□□□ -1.17
NIPBL-204ENST00000504430 SMARCA5O60264 1052 aaPredicted RBP7.75□□□□□ -1.17
NIPBL-204ENST00000504430 PSEN1P49768 467 aa7.75□□□□□ -1.17
NIPBL-204ENST00000504430 MAP2K5Q13163 448 aa7.75□□□□□ -1.17
NIPBL-204ENST00000504430 NLRP7Q8WX94 980 aa7.75□□□□□ -1.17
NIPBL-204ENST00000504430 CAMK2BQ13554 666 aa7.75□□□□□ -1.17
NIPBL-204ENST00000504430 MFSD10Q14728 455 aa7.74□□□□□ -1.17
NIPBL-204ENST00000504430 ZNF526Q8TF50 670 aaPredicted RBP7.74□□□□□ -1.17
NIPBL-204ENST00000504430 MINK1Q8N4C8 1332 aaPredicted RBP7.74□□□□□ -1.17
NIPBL-204ENST00000504430 PDE4AP27815 886 aa7.73□□□□□ -1.17
NIPBL-204ENST00000504430 OXER1Q8TDS5 423 aa7.73□□□□□ -1.17
NIPBL-204ENST00000504430 CALR3Q96L12 384 aaKnown RBP7.73□□□□□ -1.17
NIPBL-204ENST00000504430 MS4A4AQ96JQ5 239 aa7.73□□□□□ -1.17
NIPBL-204ENST00000504430 CCDC125Q86Z20 511 aa7.72□□□□□ -1.17
NIPBL-204ENST00000504430 GOPCQ9HD26 462 aa7.72□□□□□ -1.17
NIPBL-204ENST00000504430 DSG3P32926 999 aa7.72□□□□□ -1.17
NIPBL-204ENST00000504430 GLMNQ92990 594 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms