RNA–Protein interactions for RNA: ENST00000504016.1

SUB1-204, Transcript of SUB1 homolog, transcriptional regulator, humanhuman

TSL 3

Gene SUB1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1-204ENST00000504016 HS6ST3Q8IZP7 471 aa12.22□□□□□ -0.45
SUB1-204ENST00000504016 CHGAP10645 457 aaKnown RBP12.21□□□□□ -0.45
SUB1-204ENST00000504016 HOXB1P14653 301 aaPredicted RBP12.21□□□□□ -0.45
SUB1-204ENST00000504016 HS3ST6Q96QI5 342 aa12.2□□□□□ -0.46
SUB1-204ENST00000504016 POTEB3A0JP26 581 aa12.16□□□□□ -0.46
SUB1-204ENST00000504016 PPP1R37O75864 691 aa12.16□□□□□ -0.46
SUB1-204ENST00000504016 POTEBQ6S5H4 581 aa12.16□□□□□ -0.46
SUB1-204ENST00000504016 ZSWIM6Q9HCJ5 1215 aa12.16□□□□□ -0.46
SUB1-204ENST00000504016 ERBB3P21860 1342 aa12.14□□□□□ -0.47
SUB1-204ENST00000504016 C2orf72A6NCS6 295 aa12.14□□□□□ -0.47
SUB1-204ENST00000504016 KIF3CO14782 793 aa12.12□□□□□ -0.47
SUB1-204ENST00000504016 TMC2Q8TDI7 906 aa12.11□□□□□ -0.47
SUB1-204ENST00000504016 GPR153Q6NV75 609 aa12.1□□□□□ -0.47
SUB1-204ENST00000504016 ARSIQ5FYB1 569 aa12.09□□□□□ -0.47
SUB1-204ENST00000504016 VARS2Q5ST30 1063 aaKnown RBP12.06□□□□□ -0.48
SUB1-204ENST00000504016 SPNS2Q8IVW8 549 aa12.06□□□□□ -0.48
SUB1-204ENST00000504016 DCAF8L2P0C7V8 631 aa12.05□□□□□ -0.48
SUB1-204ENST00000504016 KRTAP3-3Q9BYR6 98 aa12.05□□□□□ -0.48
SUB1-204ENST00000504016 KRTAP3-2Q9BYR7 98 aa12.05□□□□□ -0.48
SUB1-204ENST00000504016 DNAJC5Q9H3Z4 198 aa12.05□□□□□ -0.48
SUB1-204ENST00000504016 NKX1-1Q15270 411 aaPredicted RBP12.04□□□□□ -0.48
SUB1-204ENST00000504016 KHSRPQ92945 711 aaKnown RBP eCLIP12.03□□□□□ -0.485e-7■■□□□ 12.3
SUB1-204ENST00000504016 RYDENQ9NUL5 291 aaKnown RBP12.03□□□□□ -0.48
SUB1-204ENST00000504016 MMRN1Q13201 1228 aa12□□□□□ -0.49
SUB1-204ENST00000504016 SLC34A2O95436 690 aa11.97□□□□□ -0.49
SUB1-204ENST00000504016 ZNF316A6NFI3 1004 aaPredicted RBP11.96□□□□□ -0.49
SUB1-204ENST00000504016 NUDT7P0C024 238 aa11.96□□□□□ -0.49
SUB1-204ENST00000504016 ZNF687Q8N1G0 1237 aa11.96□□□□□ -0.49
SUB1-204ENST00000504016 PCDHGA4Q9Y5G9 962 aa11.96□□□□□ -0.49
SUB1-204ENST00000504016 GPHNQ9NQX3 736 aaPredicted RBP11.95□□□□□ -0.5
SUB1-204ENST00000504016 FOXK1P85037 733 aa11.93□□□□□ -0.5
SUB1-204ENST00000504016 PLPP6Q8IY26 295 aa11.93□□□□□ -0.5
SUB1-204ENST00000504016 DSG2Q14126 1118 aa11.9□□□□□ -0.5
SUB1-204ENST00000504016 GTPBP6O43824 516 aaPredicted RBP11.89□□□□□ -0.51
SUB1-204ENST00000504016 LHX6Q9UPM6 363 aa11.88□□□□□ -0.51
SUB1-204ENST00000504016 PTCD2Q8WV60 388 aaKnown RBP11.86□□□□□ -0.51
SUB1-204ENST00000504016 TBC1D12O60347 775 aa11.84□□□□□ -0.51
SUB1-204ENST00000504016 CRISPLD2Q9H0B8 497 aa11.83□□□□□ -0.52
SUB1-204ENST00000504016 PDE4AP27815 886 aa11.82□□□□□ -0.52
SUB1-204ENST00000504016 ANKRD13DQ6ZTN6 518 aa11.81□□□□□ -0.52
SUB1-204ENST00000504016 PSDA5PKW4 1024 aaPredicted RBP11.79□□□□□ -0.52
SUB1-204ENST00000504016 PPP1R15BQ5SWA1 713 aa11.79□□□□□ -0.52
SUB1-204ENST00000504016 PBX2P40425 430 aa11.78□□□□□ -0.52
SUB1-204ENST00000504016 NCKAP5LQ9HCH0 1330 aa11.78□□□□□ -0.52
SUB1-204ENST00000504016 KDM4FA0A1W2PPD8 638 aa11.77□□□□□ -0.53
SUB1-204ENST00000504016 LSM11P83369 360 aaKnown RBP eCLIP11.77□□□□□ -0.533e-6■■■□□ 18.3
SUB1-204ENST00000504016 UPF1Q92900 1129 aaKnown RBP eCLIP11.77□□□□□ -0.53
SUB1-204ENST00000504016 AXIN2Q9Y2T1 843 aa11.76□□□□□ -0.53
SUB1-204ENST00000504016 LARP6Q9BRS8 491 aaKnown RBP11.75□□□□□ -0.53
SUB1-204ENST00000504016 MYT1LQ9UL68 1186 aa11.75□□□□□ -0.53
SUB1-204ENST00000504016 AMER1Q5JTC6 1135 aaPredicted RBP11.74□□□□□ -0.53
SUB1-204ENST00000504016 OXER1Q8TDS5 423 aa11.74□□□□□ -0.53
SUB1-204ENST00000504016 RNF166Q96A37 237 aaPredicted RBP11.74□□□□□ -0.53
SUB1-204ENST00000504016 POTEEQ6S8J3 1075 aa11.73□□□□□ -0.53
SUB1-204ENST00000504016 PTGER2P43116 358 aa11.72□□□□□ -0.53
SUB1-204ENST00000504016 DDX27Q96GQ7 796 aaKnown RBP11.72□□□□□ -0.53
SUB1-204ENST00000504016 ARHGAP33O14559 1287 aa11.7□□□□□ -0.54
SUB1-204ENST00000504016 PPP4R3BQ5MIZ7 849 aa11.7□□□□□ -0.54
SUB1-204ENST00000504016 BBXQ8WY36 941 aaPredicted RBP11.69□□□□□ -0.54
SUB1-204ENST00000504016 MFSD10Q14728 455 aa11.65□□□□□ -0.54
SUB1-204ENST00000504016 CADPS2Q86UW7 1296 aa11.65□□□□□ -0.54
SUB1-204ENST00000504016 RTN4Q9NQC3 1192 aaKnown RBP11.65□□□□□ -0.54
SUB1-204ENST00000504016 PSEN2P49810 448 aa11.64□□□□□ -0.55
SUB1-204ENST00000504016 MAP3K9P80192 1104 aa11.63□□□□□ -0.55
SUB1-204ENST00000504016 ZNF454Q8N9F8 522 aa11.63□□□□□ -0.55
SUB1-204ENST00000504016 EVI5O60447 810 aa11.61□□□□□ -0.55
SUB1-204ENST00000504016 DMRTA1Q5VZB9 504 aa11.61□□□□□ -0.55
SUB1-204ENST00000504016 ADGRD1Q6QNK2 874 aa11.61□□□□□ -0.55
SUB1-204ENST00000504016 KCNH8Q96L42 1107 aa11.61□□□□□ -0.55
SUB1-204ENST00000504016 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.6□□□□□ -0.55
SUB1-204ENST00000504016 SPRYD3Q8NCJ5 442 aa11.59□□□□□ -0.55
SUB1-204ENST00000504016 KCNK17Q96T54 332 aa11.59□□□□□ -0.55
SUB1-204ENST00000504016 ANO8Q9HCE9 1232 aaPredicted RBP11.59□□□□□ -0.55
SUB1-204ENST00000504016 TK2O00142 265 aa11.57□□□□□ -0.56
SUB1-204ENST00000504016 FOSBP53539 338 aa11.57□□□□□ -0.56
SUB1-204ENST00000504016 EMILIN3Q9NT22 766 aa11.57□□□□□ -0.56
SUB1-204ENST00000504016 JPH4Q96JJ6 628 aa11.54□□□□□ -0.56
SUB1-204ENST00000504016 STAC3Q96MF2 364 aa11.54□□□□□ -0.56
SUB1-204ENST00000504016 BCL2L12Q9HB09 334 aa11.54□□□□□ -0.56
SUB1-204ENST00000504016 HRO43593 1189 aa11.51□□□□□ -0.57
SUB1-204ENST00000504016 PTPREP23469 700 aa11.51□□□□□ -0.57
SUB1-204ENST00000504016 ZDHHC16Q969W1 377 aa11.51□□□□□ -0.57
SUB1-204ENST00000504016 CFAP44Q96MT7 982 aa11.51□□□□□ -0.57
SUB1-204ENST00000504016 PAXIP1Q6ZW49 1069 aaPredicted RBP11.5□□□□□ -0.57
SUB1-204ENST00000504016 CAMK2BQ13554 666 aa11.48□□□□□ -0.57
SUB1-204ENST00000504016 ADAM33Q9BZ11 813 aa11.48□□□□□ -0.57
SUB1-204ENST00000504016 VPS9D1Q9Y2B5 631 aa11.48□□□□□ -0.57
SUB1-204ENST00000504016 DPYSL4O14531 572 aa11.46□□□□□ -0.57
SUB1-204ENST00000504016 HCSTQ9UBK5 93 aa11.45□□□□□ -0.58
SUB1-204ENST00000504016 PCDHGA10Q9Y5H3 936 aa11.45□□□□□ -0.58
SUB1-204ENST00000504016 SLC4A5Q9BY07 1137 aa11.44□□□□□ -0.58
SUB1-204ENST00000504016 TYW1BQ6NUM6 668 aa11.42□□□□□ -0.58
SUB1-204ENST00000504016 KCTD12Q96CX2 325 aaKnown RBP11.42□□□□□ -0.58
SUB1-204ENST00000504016 ZBED2Q9BTP6 218 aa11.42□□□□□ -0.58
SUB1-204ENST00000504016 PHF14O94880 888 aa11.41□□□□□ -0.58
SUB1-204ENST00000504016 FBXW7Q969H0 707 aa11.4□□□□□ -0.58
SUB1-204ENST00000504016 WDR70Q9NW82 654 aa11.39□□□□□ -0.59
SUB1-204ENST00000504016 EPAS1Q99814 870 aa11.37□□□□□ -0.59
SUB1-204ENST00000504016 GOLGA8CPA6NN73 597 aa11.36□□□□□ -0.59
SUB1-204ENST00000504016 PPP1R3GB7ZBB8 358 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms