RNA–Protein interactions for RNA: ENST00000498801.5

GARNL3-222, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-222	ENST00000498801	TRPC6	Q9Y210	931 aa		12.96	□□□□□ -0.33
GARNL3-222	ENST00000498801	TMEM106C	Q9BVX2	250 aa		12.95	□□□□□ -0.34
GARNL3-222	ENST00000498801	ABCC8	Q09428	1581 aa		12.94	□□□□□ -0.34
GARNL3-222	ENST00000498801	PPP1R37	O75864	691 aa		12.94	□□□□□ -0.34
GARNL3-222	ENST00000498801	PRKCSH	P14314	528 aa	Predicted RBP	12.92	□□□□□ -0.34
GARNL3-222	ENST00000498801	DNMBP	Q6XZF7	1577 aa		12.91	□□□□□ -0.34
GARNL3-222	ENST00000498801	TOPBP1	Q92547	1522 aa		12.9	□□□□□ -0.34
GARNL3-222	ENST00000498801	GOLGA2	Q08379	1002 aa		12.89	□□□□□ -0.35
GARNL3-222	ENST00000498801	TIE1	P35590	1138 aa		12.87	□□□□□ -0.35
GARNL3-222	ENST00000498801	MS4A4A	Q96JQ5	239 aa		12.87	□□□□□ -0.35
GARNL3-222	ENST00000498801	TPRN	Q4KMQ1	711 aa		12.86	□□□□□ -0.35
GARNL3-222	ENST00000498801	P3H3	Q8IVL6	736 aa		12.86	□□□□□ -0.35
GARNL3-222	ENST00000498801	WDR70	Q9NW82	654 aa		12.85	□□□□□ -0.35
GARNL3-222	ENST00000498801	TTLL13P	A6NNM8	815 aa		12.84	□□□□□ -0.35
GARNL3-222	ENST00000498801	CUX1	P39880	1505 aa		12.83	□□□□□ -0.35
GARNL3-222	ENST00000498801	MKRN3	Q13064	507 aa	Known RBP	12.83	□□□□□ -0.36
GARNL3-222	ENST00000498801	IFT140	Q96RY7	1462 aa		12.83	□□□□□ -0.36
GARNL3-222	ENST00000498801	HAX1	O00165	279 aa		12.82	□□□□□ -0.36
GARNL3-222	ENST00000498801	GALR2	O43603	387 aa	Predicted RBP	12.82	□□□□□ -0.36
GARNL3-222	ENST00000498801	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.82	□□□□□ -0.36
GARNL3-222	ENST00000498801	POLA1	P09884	1462 aa	Predicted RBP	12.81	□□□□□ -0.36
GARNL3-222	ENST00000498801	KCNV2	Q8TDN2	545 aa		12.81	□□□□□ -0.36
GARNL3-222	ENST00000498801	EVX2	Q03828	476 aa		12.79	□□□□□ -0.36
GARNL3-222	ENST00000498801	WDR97	A6NE52	1622 aa		12.77	□□□□□ -0.36
GARNL3-222	ENST00000498801	TARBP1	Q13395	1621 aa	Known RBP	12.77	□□□□□ -0.36
GARNL3-222	ENST00000498801	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.77	□□□□□ -0.37
GARNL3-222	ENST00000498801	TOP2B	Q02880	1626 aa		12.77	□□□□□ -0.37
GARNL3-222	ENST00000498801	FGD5	Q6ZNL6	1462 aa		12.76	□□□□□ -0.37
GARNL3-222	ENST00000498801	BIVM-ERCC5	R4GMW8	1640 aa		12.76	□□□□□ -0.37
GARNL3-222	ENST00000498801	CLCN6	P51797	869 aa		12.75	□□□□□ -0.37
GARNL3-222	ENST00000498801	TRIM35	Q9UPQ4	493 aa		12.75	□□□□□ -0.37
GARNL3-222	ENST00000498801	NCKAP5L	Q9HCH0	1330 aa		12.74	□□□□□ -0.37
GARNL3-222	ENST00000498801	ILDR1	Q86SU0	546 aa	Predicted RBP	12.74	□□□□□ -0.37
GARNL3-222	ENST00000498801	SYNJ1	O43426	1573 aa		12.73	□□□□□ -0.37
GARNL3-222	ENST00000498801	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.72	□□□□□ -0.37
GARNL3-222	ENST00000498801	ABCA10	Q8WWZ4	1543 aa		12.71	□□□□□ -0.38
GARNL3-222	ENST00000498801	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.7	□□□□□ -0.38
GARNL3-222	ENST00000498801	SOGA1	O94964	1423 aa		12.7	□□□□□ -0.38
GARNL3-222	ENST00000498801	EIF4G3	O43432	1585 aa	Known RBP	12.69	□□□□□ -0.38
GARNL3-222	ENST00000498801	CRISPLD2	Q9H0B8	497 aa		12.69	□□□□□ -0.38
GARNL3-222	ENST00000498801	E2F4	Q16254	413 aa		12.68	□□□□□ -0.38
GARNL3-222	ENST00000498801	RAD54L2	Q9Y4B4	1467 aa		12.67	□□□□□ -0.38
GARNL3-222	ENST00000498801	PDE4A	P27815	886 aa		12.67	□□□□□ -0.38
GARNL3-222	ENST00000498801	MFSD10	Q14728	455 aa		12.67	□□□□□ -0.38
GARNL3-222	ENST00000498801	LARP6	Q9BRS8	491 aa	Known RBP	12.67	□□□□□ -0.38
GARNL3-222	ENST00000498801	ATN1	P54259	1190 aa	Predicted RBP	12.66	□□□□□ -0.38
GARNL3-222	ENST00000498801	ABCA5	Q8WWZ7	1642 aa		12.65	□□□□□ -0.38
GARNL3-222	ENST00000498801	ARHGEF1	Q92888	912 aa	Known RBP	12.64	□□□□□ -0.39
GARNL3-222	ENST00000498801	ATMIN	O43313	823 aa	Predicted RBP	12.63	□□□□□ -0.39
GARNL3-222	ENST00000498801	ASTL	Q6HA08	431 aa	Predicted RBP	12.63	□□□□□ -0.39
GARNL3-222	ENST00000498801	DDX27	Q96GQ7	796 aa	Known RBP	12.62	□□□□□ -0.39
GARNL3-222	ENST00000498801	DPY19L2	Q6NUT2	758 aa		12.61	□□□□□ -0.39
GARNL3-222	ENST00000498801	PDCD7	Q8N8D1	485 aa	Known RBP	12.61	□□□□□ -0.39
GARNL3-222	ENST00000498801	AQR	O60306	1485 aa	Known RBP eCLIP	12.6	□□□□□ -0.39
GARNL3-222	ENST00000498801	GRIN2B	Q13224	1484 aa		12.6	□□□□□ -0.39
GARNL3-222	ENST00000498801	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.59	□□□□□ -0.39
GARNL3-222	ENST00000498801	TDRD9	Q8NDG6	1382 aa	Known RBP	12.58	□□□□□ -0.4
GARNL3-222	ENST00000498801	IRX5	P78411	483 aa	Predicted RBP	12.58	□□□□□ -0.4
GARNL3-222	ENST00000498801	GAPVD1	Q14C86	1478 aa		12.58	□□□□□ -0.4
GARNL3-222	ENST00000498801	IER5L	Q5T953	404 aa		12.57	□□□□□ -0.4
GARNL3-222	ENST00000498801	MICALL2	Q8IY33	904 aa		12.57	□□□□□ -0.4
GARNL3-222	ENST00000498801	ERICH3	Q5RHP9	1530 aa		12.56	□□□□□ -0.4
GARNL3-222	ENST00000498801	GABBR2	O75899	941 aa		12.55	□□□□□ -0.4
GARNL3-222	ENST00000498801	CAMK2B	Q13554	666 aa		12.55	□□□□□ -0.4
GARNL3-222	ENST00000498801	OCEL1	Q9H607	264 aa		12.54	□□□□□ -0.4
GARNL3-222	ENST00000498801	GPHN	Q9NQX3	736 aa	Predicted RBP	12.54	□□□□□ -0.4
GARNL3-222	ENST00000498801	SNAPC4	Q5SXM2	1469 aa		12.53	□□□□□ -0.4
GARNL3-222	ENST00000498801	LMOD2	Q6P5Q4	547 aa		12.53	□□□□□ -0.4
GARNL3-222	ENST00000498801	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
GARNL3-222	ENST00000498801	SYNJ2	O15056	1496 aa		12.53	□□□□□ -0.4
GARNL3-222	ENST00000498801	PPP1R15B	Q5SWA1	713 aa		12.52	□□□□□ -0.41
GARNL3-222	ENST00000498801	SEMA3E	O15041	775 aa		12.51	□□□□□ -0.41
GARNL3-222	ENST00000498801	ARIH1	Q9Y4X5	557 aa	Predicted RBP	12.51	□□□□□ -0.41
GARNL3-222	ENST00000498801	ADAMTS12	P58397	1594 aa		12.51	□□□□□ -0.41
GARNL3-222	ENST00000498801	PBRM1	Q86U86	1689 aa		12.51	□□□□□ -0.41
GARNL3-222	ENST00000498801	PLCG2	P16885	1265 aa		12.5	□□□□□ -0.41
GARNL3-222	ENST00000498801	KIF27	Q86VH2	1401 aa		12.5	□□□□□ -0.41
GARNL3-222	ENST00000498801	TESPA1	A2RU30	521 aa	Predicted RBP	12.49	□□□□□ -0.41
GARNL3-222	ENST00000498801	POTEH	Q6S545	545 aa		12.49	□□□□□ -0.41
GARNL3-222	ENST00000498801	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.49	□□□□□ -0.41
GARNL3-222	ENST00000498801	BOLA1	Q9Y3E2	137 aa		12.49	□□□□□ -0.41
GARNL3-222	ENST00000498801	TULP1	O00294	542 aa	Predicted RBP	12.48	□□□□□ -0.41
GARNL3-222	ENST00000498801	FHAD1	B1AJZ9	1412 aa		12.47	□□□□□ -0.41
GARNL3-222	ENST00000498801	TMC2	Q8TDI7	906 aa		12.46	□□□□□ -0.41
GARNL3-222	ENST00000498801	DCBLD2	Q96PD2	775 aa		12.46	□□□□□ -0.41
GARNL3-222	ENST00000498801	DSG2	Q14126	1118 aa		12.45	□□□□□ -0.42
GARNL3-222	ENST00000498801	PELP1	Q8IZL8	1130 aa	Known RBP	12.45	□□□□□ -0.42
GARNL3-222	ENST00000498801		G3V3G9	751 aa		12.44	□□□□□ -0.42
GARNL3-222	ENST00000498801	GRIN2A	Q12879	1464 aa		12.44	□□□□□ -0.42
GARNL3-222	ENST00000498801	IGF1R	P08069	1367 aa		12.43	□□□□□ -0.42
GARNL3-222	ENST00000498801	CLASP1	Q7Z460	1538 aa		12.43	□□□□□ -0.42
GARNL3-222	ENST00000498801	NUP160	Q12769	1436 aa		12.43	□□□□□ -0.42
GARNL3-222	ENST00000498801	CUL7	Q14999	1698 aa		12.42	□□□□□ -0.42
GARNL3-222	ENST00000498801	FOXK1	P85037	733 aa		12.42	□□□□□ -0.42
GARNL3-222	ENST00000498801	CHD1	O14646	1710 aa		12.41	□□□□□ -0.42
GARNL3-222	ENST00000498801	L3MBTL3	Q96JM7	780 aa	Predicted RBP	12.41	□□□□□ -0.42
GARNL3-222	ENST00000498801	EMILIN3	Q9NT22	766 aa		12.41	□□□□□ -0.42
GARNL3-222	ENST00000498801	COLQ	Q9Y215	455 aa	Predicted RBP	12.41	□□□□□ -0.42
GARNL3-222	ENST00000498801	C2orf72	A6NCS6	295 aa		12.4	□□□□□ -0.42
GARNL3-222	ENST00000498801	KIF3C	O14782	793 aa		12.4	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms