RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 CHIC2Q9UKJ5 165 aa23.17■■□□□ 1.3
COL6A1-206ENST00000498614 RRP7BPQ9NSQ0 103 aa23.16■■□□□ 1.3
COL6A1-206ENST00000498614 ANP32EQ9BTT0 268 aa23.15■■□□□ 1.3
COL6A1-206ENST00000498614 TCOF1Q13428 1488 aaKnown RBP23.15■■□□□ 1.3
COL6A1-206ENST00000498614 ABCA8O94911 1581 aa23.12■■□□□ 1.29
COL6A1-206ENST00000498614 GCC2Q8IWJ2 1684 aa23.09■■□□□ 1.29
COL6A1-206ENST00000498614 ATP10BO94823 1461 aa23.06■■□□□ 1.28
COL6A1-206ENST00000498614 KDM6BO15054 1643 aa23.06■■□□□ 1.28
COL6A1-206ENST00000498614 MIA2Q96PC5 1412 aa23.06■■□□□ 1.28
COL6A1-206ENST00000498614 CYB5RLQ6IPT4 315 aa23.05■■□□□ 1.28
COL6A1-206ENST00000498614 TRIM52Q96A61 297 aa23.04■■□□□ 1.28
COL6A1-206ENST00000498614 CCER2I3L3R5 266 aa23.03■■□□□ 1.28
COL6A1-206ENST00000498614 AKNAQ7Z591 1439 aa23■■□□□ 1.27
COL6A1-206ENST00000498614 DENND4BO75064 1496 aaPredicted RBP23■■□□□ 1.27
COL6A1-206ENST00000498614 CDK11AQ9UQ88 783 aaPredicted RBP23■■□□□ 1.27
COL6A1-206ENST00000498614 ABCC2Q92887 1545 aa22.99■■□□□ 1.27
COL6A1-206ENST00000498614 KDM5BQ9UGL1 1544 aa22.99■■□□□ 1.27
COL6A1-206ENST00000498614 ANP32CO43423 234 aa22.99■■□□□ 1.27
COL6A1-206ENST00000498614 NEFLP07196 543 aa22.99■■□□□ 1.27
COL6A1-206ENST00000498614 PLEKHD1A6NEE1 506 aa22.98■■□□□ 1.27
COL6A1-206ENST00000498614 RIMBP3CA6NJZ7 1639 aa22.95■■□□□ 1.26
COL6A1-206ENST00000498614 RIMBP3BA6NNM3 1639 aa22.95■■□□□ 1.26
COL6A1-206ENST00000498614 RIMBP3Q9UFD9 1639 aa22.95■■□□□ 1.26
COL6A1-206ENST00000498614 ADCY10Q96PN6 1610 aa22.94■■□□□ 1.26
COL6A1-206ENST00000498614 DAPK1P53355 1430 aa22.94■■□□□ 1.26
COL6A1-206ENST00000498614 ZNF644Q9H582 1327 aaPredicted RBP22.93■■□□□ 1.26
COL6A1-206ENST00000498614 MPHOSPH9Q99550 1183 aa22.92■■□□□ 1.26
COL6A1-206ENST00000498614 RBM19Q9Y4C8 960 aaKnown RBP22.91■■□□□ 1.26
COL6A1-206ENST00000498614 TROQ12816 1431 aaPredicted RBP22.9■■□□□ 1.26
COL6A1-206ENST00000498614 DNMT1P26358 1616 aaKnown RBP22.9■■□□□ 1.26
COL6A1-206ENST00000498614 FOXD1Q16676 465 aa22.9■■□□□ 1.26
COL6A1-206ENST00000498614 UHRF1BP1LA0JNW5 1464 aa22.9■■□□□ 1.26
COL6A1-206ENST00000498614 ABCC5O15440 1437 aa22.89■■□□□ 1.25
COL6A1-206ENST00000498614 ZCCHC11Q5TAX3 1644 aaKnown RBP22.87■■□□□ 1.25
COL6A1-206ENST00000498614 KIF14Q15058 1648 aa22.86■■□□□ 1.25
COL6A1-206ENST00000498614 ROCK1Q13464 1354 aa22.86■■□□□ 1.25
COL6A1-206ENST00000498614 NPM1P06748 294 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL6A1-206ENST00000498614 HSPA5P11021 654 aaKnown RBP22.81■■□□□ 1.24
COL6A1-206ENST00000498614 L3MBTL2Q969R5 705 aa22.8■■□□□ 1.24
COL6A1-206ENST00000498614 CAMSAP2Q08AD1 1489 aa22.78■■□□□ 1.24
COL6A1-206ENST00000498614 CFDP1Q9UEE9 299 aaPredicted RBP22.78■■□□□ 1.24
COL6A1-206ENST00000498614 ZNF777Q9ULD5 760 aaPredicted RBP22.78■■□□□ 1.24
COL6A1-206ENST00000498614 ITSN2Q9NZM3 1697 aa22.77■■□□□ 1.24
COL6A1-206ENST00000498614 ANKRD30BQ9BXX2 1392 aa22.76■■□□□ 1.23
COL6A1-206ENST00000498614 GPATCH8Q9UKJ3 1502 aaKnown RBP22.75■■□□□ 1.23
COL6A1-206ENST00000498614 SLC4A1APQ9BWU0 796 aaKnown RBP22.75■■□□□ 1.23
COL6A1-206ENST00000498614 WASHC2AQ641Q2 1341 aa22.75■■□□□ 1.23
COL6A1-206ENST00000498614 ASXL2Q76L83 1435 aa22.74■■□□□ 1.23
COL6A1-206ENST00000498614 EIF4G2P78344 907 aaKnown RBP eCLIP22.74■■□□□ 1.23
COL6A1-206ENST00000498614 RPRD2Q5VT52 1461 aaKnown RBP22.72■■□□□ 1.23
COL6A1-206ENST00000498614 HNRNPUQ00839 825 aaKnown RBP eCLIP22.71■■□□□ 1.23
COL6A1-206ENST00000498614 ABCC10Q5T3U5 1492 aa22.71■■□□□ 1.23
COL6A1-206ENST00000498614 ADGBQ8N7X0 1667 aa22.7■■□□□ 1.22
COL6A1-206ENST00000498614 WDR7Q9Y4E6 1490 aa22.69■■□□□ 1.22
COL6A1-206ENST00000498614 NCOA1Q15788 1441 aa22.69■■□□□ 1.22
COL6A1-206ENST00000498614 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.68■■□□□ 1.22
COL6A1-206ENST00000498614 TEX14Q8IWB6 1497 aa22.68■■□□□ 1.22
COL6A1-206ENST00000498614 TTC37Q6PGP7 1564 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 NBPF8Q3BBV2 869 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 CROCC2H7BZ55 1655 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 MSH5O43196 834 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 BCL11AQ9H165 835 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 PZPP20742 1482 aa22.66■■□□□ 1.22
COL6A1-206ENST00000498614 IRX6P78412 446 aaPredicted RBP22.66■■□□□ 1.22
COL6A1-206ENST00000498614 CDC42BPAQ5VT25 1732 aa22.63■■□□□ 1.21
COL6A1-206ENST00000498614 ADGRL2O95490 1459 aa22.62■■□□□ 1.21
COL6A1-206ENST00000498614 C11orf95C9JLR9 678 aaPredicted RBP22.62■■□□□ 1.21
COL6A1-206ENST00000498614 ANKRD30AQ9BXX3 1397 aa22.6■■□□□ 1.21
COL6A1-206ENST00000498614 CNTLNQ9NXG0 1405 aa22.59■■□□□ 1.21
COL6A1-206ENST00000498614 DNAJC5Q9H3Z4 198 aa22.59■■□□□ 1.21
COL6A1-206ENST00000498614 HNRNPMP52272 730 aaKnown RBP eCLIP22.58■■□□□ 1.21
COL6A1-206ENST00000498614 CCDC7Q96M83 1385 aa22.58■■□□□ 1.2
COL6A1-206ENST00000498614 CDC42BPBQ9Y5S2 1711 aa22.57■■□□□ 1.2
COL6A1-206ENST00000498614 ARHGAP5Q13017 1502 aa22.56■■□□□ 1.2
COL6A1-206ENST00000498614 KIAA1107Q9UPP5 1409 aa22.56■■□□□ 1.2
COL6A1-206ENST00000498614 PKD2Q13563 968 aa22.55■■□□□ 1.2
COL6A1-206ENST00000498614 ANKRD50Q9ULJ7 1429 aa22.55■■□□□ 1.2
COL6A1-206ENST00000498614 CCDC184Q52MB2 194 aa22.54■■□□□ 1.2
COL6A1-206ENST00000498614 FANCIQ9NVI1 1328 aa22.54■■□□□ 1.2
COL6A1-206ENST00000498614 PLCH2O75038 1416 aa22.53■■□□□ 1.2
COL6A1-206ENST00000498614 PREX2Q70Z35 1606 aa22.52■■□□□ 1.2
COL6A1-206ENST00000498614 C9orf84Q5VXU9 1444 aa22.52■■□□□ 1.2
COL6A1-206ENST00000498614 SPATA31E1Q6ZUB1 1445 aa22.51■■□□□ 1.19
COL6A1-206ENST00000498614 MYO5CQ9NQX4 1742 aa22.51■■□□□ 1.19
COL6A1-206ENST00000498614 FAM69CQ0P6D2 419 aa22.51■■□□□ 1.19
COL6A1-206ENST00000498614 EFCAB2Q5VUJ9 269 aa22.49■■□□□ 1.19
COL6A1-206ENST00000498614 ZNF326Q5BKZ1 582 aaKnown RBP22.49■■□□□ 1.19
COL6A1-206ENST00000498614 SHANK2Q9UPX8 1470 aa22.49■■□□□ 1.19
COL6A1-206ENST00000498614 KIF7Q2M1P5 1343 aa22.49■■□□□ 1.19
COL6A1-206ENST00000498614 SAMD9LQ8IVG5 1584 aa22.48■■□□□ 1.19
COL6A1-206ENST00000498614 MBD5Q9P267 1494 aa22.48■■□□□ 1.19
COL6A1-206ENST00000498614 ABCA9Q8IUA7 1624 aa22.48■■□□□ 1.19
COL6A1-206ENST00000498614 CD109Q6YHK3 1445 aa22.47■■□□□ 1.19
COL6A1-206ENST00000498614 POLR1AO95602 1720 aaPredicted RBP22.47■■□□□ 1.19
COL6A1-206ENST00000498614 NUP155O75694 1391 aa22.47■■□□□ 1.19
COL6A1-206ENST00000498614 TSPY4P0CV99 314 aa22.46■■□□□ 1.19
COL6A1-206ENST00000498614 TSPY10P0CW01 314 aa22.46■■□□□ 1.19
COL6A1-206ENST00000498614 PRKRIP1Q9H875 184 aaPredicted RBP22.46■■□□□ 1.19
COL6A1-206ENST00000498614 ERICH6BQ5W0A0 696 aa22.45■■□□□ 1.18
COL6A1-206ENST00000498614 PPP4R2Q9NY27 417 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms