RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 CLEC11AQ9Y240 323 aa10.34□□□□□ -0.75
USP39-219ENST00000496047 CCNB3Q8WWL7 1395 aa10.34□□□□□ -0.75
USP39-219ENST00000496047 CHD1O14646 1710 aa10.33□□□□□ -0.76
USP39-219ENST00000496047 ATP1B4Q9UN42 357 aaPredicted RBP10.33□□□□□ -0.76
USP39-219ENST00000496047 RAPGEF6Q8TEU7 1601 aa10.33□□□□□ -0.76
USP39-219ENST00000496047 P3H3Q8IVL6 736 aa10.32□□□□□ -0.76
USP39-219ENST00000496047 MTUS2Q5JR59 1369 aa10.31□□□□□ -0.76
USP39-219ENST00000496047 PRKAR2AP13861 404 aaKnown RBP10.31□□□□□ -0.76
USP39-219ENST00000496047 KANK4Q5T7N3 995 aaPredicted RBP10.3□□□□□ -0.76
USP39-219ENST00000496047 ITSN2Q9NZM3 1697 aa10.3□□□□□ -0.76
USP39-219ENST00000496047 CEP170Q5SW79 1584 aa10.3□□□□□ -0.76
USP39-219ENST00000496047 CARMIL2Q6F5E8 1435 aa10.28□□□□□ -0.76
USP39-219ENST00000496047 SPDYE1Q8NFV5 336 aaPredicted RBP10.28□□□□□ -0.76
USP39-219ENST00000496047 CHMP7Q8WUX9 453 aaPredicted RBP10.27□□□□□ -0.77
USP39-219ENST00000496047 CLSPNQ9HAW4 1339 aa10.27□□□□□ -0.77
USP39-219ENST00000496047 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.26□□□□□ -0.77
USP39-219ENST00000496047 PTPN23Q9H3S7 1636 aa10.25□□□□□ -0.77
USP39-219ENST00000496047 NUP160Q12769 1436 aa10.24□□□□□ -0.77
USP39-219ENST00000496047 EPRSP07814 1512 aaKnown RBP10.24□□□□□ -0.77
USP39-219ENST00000496047 ZNF692Q9BU19 519 aaPredicted RBP10.24□□□□□ -0.77
USP39-219ENST00000496047 GCC2Q8IWJ2 1684 aa10.24□□□□□ -0.77
USP39-219ENST00000496047 DISP1Q96F81 1524 aa10.23□□□□□ -0.77
USP39-219ENST00000496047 ADCY10Q96PN6 1610 aa10.23□□□□□ -0.77
USP39-219ENST00000496047 FGD6Q6ZV73 1430 aa10.23□□□□□ -0.77
USP39-219ENST00000496047 NCOA2Q15596 1464 aa10.23□□□□□ -0.77
USP39-219ENST00000496047 PHLDB1Q86UU1 1377 aa10.22□□□□□ -0.77
USP39-219ENST00000496047 MYOM3Q5VTT5 1437 aa10.22□□□□□ -0.77
USP39-219ENST00000496047 FAM50AQ14320 339 aaKnown RBP10.2□□□□□ -0.78
USP39-219ENST00000496047 ADGBQ8N7X0 1667 aa10.2□□□□□ -0.78
USP39-219ENST00000496047 CDK13Q14004 1512 aaKnown RBP10.19□□□□□ -0.78
USP39-219ENST00000496047 FBXO41Q8TF61 875 aa10.19□□□□□ -0.78
USP39-219ENST00000496047 CDK11AQ9UQ88 783 aaPredicted RBP10.19□□□□□ -0.78
USP39-219ENST00000496047 SHROOM2Q13796 1616 aa10.18□□□□□ -0.78
USP39-219ENST00000496047 KIF14Q15058 1648 aa10.18□□□□□ -0.78
USP39-219ENST00000496047 SETD5Q9C0A6 1442 aa10.18□□□□□ -0.78
USP39-219ENST00000496047 SOCS7O14512 581 aa10.18□□□□□ -0.78
USP39-219ENST00000496047 MKRN4PQ13434 485 aaPredicted RBP10.18□□□□□ -0.78
USP39-219ENST00000496047 C19orf67A6NJJ6 358 aa10.17□□□□□ -0.78
USP39-219ENST00000496047 TCOF1Q13428 1488 aaKnown RBP10.17□□□□□ -0.78
USP39-219ENST00000496047 LMTK3Q96Q04 1460 aa10.17□□□□□ -0.78
USP39-219ENST00000496047 MIA2Q96PC5 1412 aa10.16□□□□□ -0.78
USP39-219ENST00000496047 CROCC2H7BZ55 1655 aa10.16□□□□□ -0.78
USP39-219ENST00000496047 SPDYE4A6NLX3 237 aa10.16□□□□□ -0.78
USP39-219ENST00000496047 ITGAEP38570 1179 aa10.16□□□□□ -0.78
USP39-219ENST00000496047 MAGI3Q5TCQ9 1506 aa10.16□□□□□ -0.78
USP39-219ENST00000496047 DHX57Q6P158 1386 aaKnown RBP10.15□□□□□ -0.78
USP39-219ENST00000496047 ABCA8O94911 1581 aa10.15□□□□□ -0.78
USP39-219ENST00000496047 SSUH2Q9Y2M2 353 aa10.15□□□□□ -0.78
USP39-219ENST00000496047 NUP153P49790 1475 aaKnown RBP10.15□□□□□ -0.78
USP39-219ENST00000496047 DNMT1P26358 1616 aaKnown RBP10.15□□□□□ -0.79
USP39-219ENST00000496047 RAB3GAP2Q9H2M9 1393 aa10.14□□□□□ -0.79
USP39-219ENST00000496047 ACIN1Q9UKV3 1341 aaKnown RBP10.14□□□□□ -0.79
USP39-219ENST00000496047 CDC42BPAQ5VT25 1732 aa10.14□□□□□ -0.79
USP39-219ENST00000496047 CHADLQ6NUI6 762 aa10.14□□□□□ -0.79
USP39-219ENST00000496047 KDM4FA0A1W2PPD8 638 aa10.13□□□□□ -0.79
USP39-219ENST00000496047 GABBR2O75899 941 aa10.12□□□□□ -0.79
USP39-219ENST00000496047 TROQ12816 1431 aaPredicted RBP10.12□□□□□ -0.79
USP39-219ENST00000496047 AKNAQ7Z591 1439 aa10.12□□□□□ -0.79
USP39-219ENST00000496047 JPH4Q96JJ6 628 aa10.11□□□□□ -0.79
USP39-219ENST00000496047 FBXO3Q9UK99 471 aa10.11□□□□□ -0.79
USP39-219ENST00000496047 MYO5CQ9NQX4 1742 aa10.1□□□□□ -0.79
USP39-219ENST00000496047 HFM1A2PYH4 1435 aa10.1□□□□□ -0.79
USP39-219ENST00000496047 PRR29P0C7W0 189 aa10.09□□□□□ -0.79
USP39-219ENST00000496047 PLB1Q6P1J6 1458 aa10.09□□□□□ -0.79
USP39-219ENST00000496047 PRG4Q92954 1404 aaPredicted RBP10.08□□□□□ -0.8
USP39-219ENST00000496047 AMER1Q5JTC6 1135 aaPredicted RBP10.08□□□□□ -0.8
USP39-219ENST00000496047 CLASP1Q7Z460 1538 aa10.07□□□□□ -0.8
USP39-219ENST00000496047 PREX2Q70Z35 1606 aa10.07□□□□□ -0.8
USP39-219ENST00000496047 ERCC6L2Q5T890 1561 aa10.06□□□□□ -0.8
USP39-219ENST00000496047 MAPKBP1O60336 1514 aa10.06□□□□□ -0.8
USP39-219ENST00000496047 UACAQ9BZF9 1416 aa10.06□□□□□ -0.8
USP39-219ENST00000496047 CAMSAP2Q08AD1 1489 aa10.05□□□□□ -0.8
USP39-219ENST00000496047 ZNF316A6NFI3 1004 aaPredicted RBP10.05□□□□□ -0.8
USP39-219ENST00000496047 LHX8Q68G74 356 aa10.05□□□□□ -0.8
USP39-219ENST00000496047 PTPRGP23470 1445 aa10.05□□□□□ -0.8
USP39-219ENST00000496047 ABCC2Q92887 1545 aa10.04□□□□□ -0.8
USP39-219ENST00000496047 CDC42BPBQ9Y5S2 1711 aa10.04□□□□□ -0.8
USP39-219ENST00000496047 PLEKHD1A6NEE1 506 aa10.03□□□□□ -0.8
USP39-219ENST00000496047 DAPK1P53355 1430 aa10.03□□□□□ -0.8
USP39-219ENST00000496047 ZCCHC11Q5TAX3 1644 aaKnown RBP10.03□□□□□ -0.8
USP39-219ENST00000496047 ROCK1Q13464 1354 aa10.02□□□□□ -0.8
USP39-219ENST00000496047 NAIPQ13075 1403 aa10.02□□□□□ -0.81
USP39-219ENST00000496047 ARID3CA6NKF2 412 aa10.01□□□□□ -0.81
USP39-219ENST00000496047 TIMELESSQ9UNS1 1208 aa10.01□□□□□ -0.81
USP39-219ENST00000496047 ARHGEF5Q12774 1597 aa10.01□□□□□ -0.81
USP39-219ENST00000496047 ATP10BO94823 1461 aa10□□□□□ -0.81
USP39-219ENST00000496047 SHANK2Q9UPX8 1470 aa10□□□□□ -0.81
USP39-219ENST00000496047 DIEXFQ68CQ4 756 aaKnown RBP10□□□□□ -0.81
USP39-219ENST00000496047 ILDR2Q71H61 639 aa10□□□□□ -0.81
USP39-219ENST00000496047 GPATCH8Q9UKJ3 1502 aaKnown RBP9.99□□□□□ -0.81
USP39-219ENST00000496047 CFDP1Q9UEE9 299 aaPredicted RBP9.98□□□□□ -0.81
USP39-219ENST00000496047 PTPRKQ15262 1439 aa9.98□□□□□ -0.81
USP39-219ENST00000496047 UHRF1BP1LA0JNW5 1464 aa9.98□□□□□ -0.81
USP39-219ENST00000496047 ADGRL2O95490 1459 aa9.98□□□□□ -0.81
USP39-219ENST00000496047 ABCC10Q5T3U5 1492 aa9.98□□□□□ -0.81
USP39-219ENST00000496047 PLEKHH2Q8IVE3 1493 aa9.97□□□□□ -0.81
USP39-219ENST00000496047 CD44P16070 742 aaKnown RBP9.96□□□□□ -0.82
USP39-219ENST00000496047 TONSLQ96HA7 1378 aa9.96□□□□□ -0.82
USP39-219ENST00000496047 TTC37Q6PGP7 1564 aa9.96□□□□□ -0.82
USP39-219ENST00000496047 PROM2Q8N271 834 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms