RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 PLCH2O75038 1416 aa29.67■■■□□ 2.34
USP39-218ENST00000493829 ZNF777Q9ULD5 760 aaPredicted RBP29.66■■■□□ 2.34
USP39-218ENST00000493829 RRBP1Q9P2E9 1410 aaKnown RBP29.66■■■□□ 2.34
USP39-218ENST00000493829 TSPOAP1O95153 1857 aa29.65■■■□□ 2.34
USP39-218ENST00000493829 MIA2Q96PC5 1412 aa29.64■■■□□ 2.34
USP39-218ENST00000493829 FAM50AQ14320 339 aaKnown RBP29.63■■■□□ 2.33
USP39-218ENST00000493829 CAMSAP2Q08AD1 1489 aa29.62■■■□□ 2.33
USP39-218ENST00000493829 SAMD9LQ8IVG5 1584 aa29.61■■■□□ 2.33
USP39-218ENST00000493829 ZNF644Q9H582 1327 aaPredicted RBP29.61■■■□□ 2.33
USP39-218ENST00000493829 TRHP20396 242 aaPredicted RBP29.6■■■□□ 2.33
USP39-218ENST00000493829 ARAP3Q8WWN8 1544 aa29.6■■■□□ 2.33
USP39-218ENST00000493829 FANCAO15360 1455 aa29.6■■■□□ 2.33
USP39-218ENST00000493829 TCOF1Q13428 1488 aaKnown RBP29.58■■■□□ 2.33
USP39-218ENST00000493829 PPRC1Q5VV67 1664 aaKnown RBP29.57■■■□□ 2.32
USP39-218ENST00000493829 TRIM26Q12899 539 aaPredicted RBP29.56■■■□□ 2.32
USP39-218ENST00000493829 EFCAB2Q5VUJ9 269 aa29.54■■■□□ 2.32
USP39-218ENST00000493829 CFAP74Q9C0B2 1584 aa29.54■■■□□ 2.32
USP39-218ENST00000493829 SYCP2Q9BX26 1530 aa29.52■■■□□ 2.32
USP39-218ENST00000493829 ITGAEP38570 1179 aa29.51■■■□□ 2.31
USP39-218ENST00000493829 ABCC1P33527 1531 aa29.5■■■□□ 2.31
USP39-218ENST00000493829 ADGRL1O94910 1474 aa29.46■■■□□ 2.31
USP39-218ENST00000493829 AKNAQ7Z591 1439 aa29.46■■■□□ 2.31
USP39-218ENST00000493829 TEX14Q8IWB6 1497 aa29.45■■■□□ 2.31
USP39-218ENST00000493829 ARHGEF12Q9NZN5 1544 aa29.45■■■□□ 2.3
USP39-218ENST00000493829 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.44■■■□□ 2.31e-6■□□□□ 11
USP39-218ENST00000493829 DNMT1P26358 1616 aaKnown RBP29.44■■■□□ 2.3
USP39-218ENST00000493829 PLEKHH2Q8IVE3 1493 aa29.44■■■□□ 2.3
USP39-218ENST00000493829 NEO1Q92859 1461 aa29.44■■■□□ 2.3
USP39-218ENST00000493829 HNRNPMP52272 730 aaKnown RBP eCLIP29.44■■■□□ 2.3
USP39-218ENST00000493829 PCGF6Q9BYE7 350 aa29.43■■■□□ 2.3
USP39-218ENST00000493829 DAPK1P53355 1430 aa29.39■■■□□ 2.3
USP39-218ENST00000493829 CROCC2H7BZ55 1655 aa29.39■■■□□ 2.3
USP39-218ENST00000493829 MBD5Q9P267 1494 aa29.39■■■□□ 2.3
USP39-218ENST00000493829 SCAPERQ9BY12 1400 aa29.39■■■□□ 2.3
USP39-218ENST00000493829 KIAA1107Q9UPP5 1409 aa29.38■■■□□ 2.29
USP39-218ENST00000493829 ARHGEF5Q12774 1597 aa29.38■■■□□ 2.29
USP39-218ENST00000493829 ABCC5O15440 1437 aa29.37■■■□□ 2.29
USP39-218ENST00000493829 CCDC141Q6ZP82 1450 aa29.37■■■□□ 2.29
USP39-218ENST00000493829 TRAPPC8Q9Y2L5 1435 aa29.35■■■□□ 2.29
USP39-218ENST00000493829 PTPRKQ15262 1439 aa29.35■■■□□ 2.29
USP39-218ENST00000493829 CHIC2Q9UKJ5 165 aa29.31■■■□□ 2.28
USP39-218ENST00000493829 POGZQ7Z3K3 1410 aa29.29■■■□□ 2.28
USP39-218ENST00000493829 DENND4BO75064 1496 aaPredicted RBP29.28■■■□□ 2.28
USP39-218ENST00000493829 AFAP1Q8N556 730 aa29.27■■■□□ 2.28
USP39-218ENST00000493829 C9orf84Q5VXU9 1444 aa29.27■■■□□ 2.28
USP39-218ENST00000493829 RICTORQ6R327 1708 aa29.26■■■□□ 2.27
USP39-218ENST00000493829 ADGBQ8N7X0 1667 aa29.26■■■□□ 2.27
USP39-218ENST00000493829 ZNF518AQ6AHZ1 1483 aa29.26■■■□□ 2.27
USP39-218ENST00000493829 SHANK2Q9UPX8 1470 aa29.26■■■□□ 2.27
USP39-218ENST00000493829 FRMPD1Q5SYB0 1578 aa29.25■■■□□ 2.27
USP39-218ENST00000493829 RAPGEF3O95398 923 aa29.25■■■□□ 2.27
USP39-218ENST00000493829 TSPY4P0CV99 314 aa29.22■■■□□ 2.27
USP39-218ENST00000493829 TSPY10P0CW01 314 aa29.22■■■□□ 2.27
USP39-218ENST00000493829 RSPH4AQ5TD94 716 aa29.21■■■□□ 2.27
USP39-218ENST00000493829 KDM5CP41229 1560 aa29.21■■■□□ 2.27
USP39-218ENST00000493829 MAST1Q9Y2H9 1570 aa29.21■■■□□ 2.27
USP39-218ENST00000493829 COL17A1Q9UMD9 1497 aaPredicted RBP29.2■■■□□ 2.27
USP39-218ENST00000493829 ZFYVE16Q7Z3T8 1539 aa29.2■■■□□ 2.26
USP39-218ENST00000493829 INO80Q9ULG1 1556 aaPredicted RBP29.2■■■□□ 2.26
USP39-218ENST00000493829 SPAG9O60271 1321 aaKnown RBP29.19■■■□□ 2.26
USP39-218ENST00000493829 MYT1LQ9UL68 1186 aa29.18■■■□□ 2.26
USP39-218ENST00000493829 ATP7AQ04656 1500 aa29.17■■■□□ 2.26
USP39-218ENST00000493829 HECW2Q9P2P5 1572 aa29.17■■■□□ 2.26
USP39-218ENST00000493829 KDM6BO15054 1643 aa29.17■■■□□ 2.26
USP39-218ENST00000493829 RRP7BPQ9NSQ0 103 aa29.17■■■□□ 2.26
USP39-218ENST00000493829 ADGRL2O95490 1459 aa29.15■■■□□ 2.26
USP39-218ENST00000493829 KIDINS220Q9ULH0 1771 aa29.13■■■□□ 2.25
USP39-218ENST00000493829 ANKRD30AQ9BXX3 1397 aa29.13■■■□□ 2.25
USP39-218ENST00000493829 GCC2Q8IWJ2 1684 aa29.12■■■□□ 2.25
USP39-218ENST00000493829 PLXNC1O60486 1568 aa29.12■■■□□ 2.25
USP39-218ENST00000493829 ROCK1Q13464 1354 aa29.12■■■□□ 2.25
USP39-218ENST00000493829 ZMYM4Q5VZL5 1548 aa29.11■■■□□ 2.25
USP39-218ENST00000493829 NCOA1Q15788 1441 aa29.11■■■□□ 2.25
USP39-218ENST00000493829 KIF15Q9NS87 1388 aa29.09■■■□□ 2.25
USP39-218ENST00000493829 HFM1A2PYH4 1435 aa29.08■■■□□ 2.25
USP39-218ENST00000493829 RTEL1-TNFRSF6BF6WH68 1400 aa29.08■■■□□ 2.25
USP39-218ENST00000493829 ABCA6Q8N139 1617 aa29.08■■■□□ 2.25
USP39-218ENST00000493829 MLH3Q9UHC1 1453 aa29.08■■■□□ 2.25
USP39-218ENST00000493829 NAIPQ13075 1403 aa29.07■■■□□ 2.24
USP39-218ENST00000493829 YEATS2Q9ULM3 1422 aa29.04■■■□□ 2.24
USP39-218ENST00000493829 DIP2CQ9Y2E4 1556 aa29.02■■■□□ 2.24
USP39-218ENST00000493829 SETD5Q9C0A6 1442 aa29.02■■■□□ 2.24
USP39-218ENST00000493829 RAB3GAP2Q9H2M9 1393 aa28.99■■■□□ 2.23
USP39-218ENST00000493829 DUOX2Q9NRD8 1548 aa28.98■■■□□ 2.23
USP39-218ENST00000493829 ARHGEF40Q8TER5 1519 aa28.98■■■□□ 2.23
USP39-218ENST00000493829 MAGI2Q86UL8 1455 aa28.96■■■□□ 2.23
USP39-218ENST00000493829 ANKRD50Q9ULJ7 1429 aa28.96■■■□□ 2.23
USP39-218ENST00000493829 A2MP01023 1474 aa28.93■■■□□ 2.22
USP39-218ENST00000493829 ERBINQ96RT1 1412 aa28.9■■■□□ 2.22
USP39-218ENST00000493829 DHX29Q7Z478 1369 aaKnown RBP28.87■■■□□ 2.21
USP39-218ENST00000493829 ATP10AO60312 1499 aa28.87■■■□□ 2.21
USP39-218ENST00000493829 SIGLEC1Q9BZZ2 1709 aa28.85■■■□□ 2.21
USP39-218ENST00000493829 EIF2AK4Q9P2K8 1649 aaKnown RBP28.84■■■□□ 2.21
USP39-218ENST00000493829 REREQ9P2R6 1566 aa28.8■■■□□ 2.2
USP39-218ENST00000493829 TRIM52Q96A61 297 aa28.8■■■□□ 2.2
USP39-218ENST00000493829 KIF3BO15066 747 aa28.79■■■□□ 2.2
USP39-218ENST00000493829 UNC13BO14795 1591 aa28.78■■■□□ 2.2
USP39-218ENST00000493829 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.76■■■□□ 2.193e-6■□□□□ 10.3
USP39-218ENST00000493829 DEPDC5O75140 1603 aa28.75■■■□□ 2.19
USP39-218ENST00000493829 BCORL1Q5H9F3 1711 aa28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms