RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 HECW2Q9P2P5 1572 aa20.24■□□□□ 0.83
UPF3A-210ENST00000493727 ABCA8O94911 1581 aa20.23■□□□□ 0.83
UPF3A-210ENST00000493727 MAGI3Q5TCQ9 1506 aa20.22■□□□□ 0.83
UPF3A-210ENST00000493727 SPDYE1Q8NFV5 336 aaPredicted RBP20.19■□□□□ 0.82
UPF3A-210ENST00000493727 GOLGA3Q08378 1498 aa20.18■□□□□ 0.82
UPF3A-210ENST00000493727 PITPNM1O00562 1244 aa20.17■□□□□ 0.82
UPF3A-210ENST00000493727 CD109Q6YHK3 1445 aa20.15■□□□□ 0.82
UPF3A-210ENST00000493727 PRXQ9BXM0 1461 aa20.12■□□□□ 0.81
UPF3A-210ENST00000493727 KIF21BO75037 1637 aa20.1■□□□□ 0.81
UPF3A-210ENST00000493727 STAG3Q9UJ98 1225 aa20.09■□□□□ 0.81
UPF3A-210ENST00000493727 CLEC11AQ9Y240 323 aa20.08■□□□□ 0.81
UPF3A-210ENST00000493727 ARAP3Q8WWN8 1544 aa20.07■□□□□ 0.8
UPF3A-210ENST00000493727 KCNH8Q96L42 1107 aa20.04■□□□□ 0.8
UPF3A-210ENST00000493727 ABCA9Q8IUA7 1624 aa20.03■□□□□ 0.8
UPF3A-210ENST00000493727 FAM9AQ8IZU1 332 aaPredicted RBP20.01■□□□□ 0.79
UPF3A-210ENST00000493727 FBXO3Q9UK99 471 aa20.01■□□□□ 0.79
UPF3A-210ENST00000493727 ATP10BO94823 1461 aa20■□□□□ 0.79
UPF3A-210ENST00000493727 SAMD9Q5K651 1589 aa19.99■□□□□ 0.79
UPF3A-210ENST00000493727 CHRDL2Q6WN34 429 aa19.98■□□□□ 0.79
UPF3A-210ENST00000493727 ADAMTSL3P82987 1691 aa19.97■□□□□ 0.79
UPF3A-210ENST00000493727 EEA1Q15075 1411 aa19.97■□□□□ 0.79
UPF3A-210ENST00000493727 FRMPD1Q5SYB0 1578 aa19.94■□□□□ 0.78
UPF3A-210ENST00000493727 PHLDB1Q86UU1 1377 aa19.94■□□□□ 0.78
UPF3A-210ENST00000493727 RAPGEF6Q8TEU7 1601 aa19.93■□□□□ 0.78
UPF3A-210ENST00000493727 PTPRMP28827 1452 aa19.92■□□□□ 0.78
UPF3A-210ENST00000493727 NEO1Q92859 1461 aa19.92■□□□□ 0.78
UPF3A-210ENST00000493727 PRR29P0C7W0 189 aa19.91■□□□□ 0.78
UPF3A-210ENST00000493727 ARID3CA6NKF2 412 aa19.9■□□□□ 0.78
UPF3A-210ENST00000493727 BCORL1Q5H9F3 1711 aa19.9■□□□□ 0.78
UPF3A-210ENST00000493727 P3H3Q8IVL6 736 aa19.87■□□□□ 0.77
UPF3A-210ENST00000493727 NUP153P49790 1475 aaKnown RBP19.86■□□□□ 0.77
UPF3A-210ENST00000493727 MADDQ8WXG6 1647 aa19.86■□□□□ 0.77
UPF3A-210ENST00000493727 RAPGEF3O95398 923 aa19.84■□□□□ 0.77
UPF3A-210ENST00000493727 ARHGEF40Q8TER5 1519 aa19.83■□□□□ 0.77
UPF3A-210ENST00000493727 RICTORQ6R327 1708 aa19.82■□□□□ 0.76
UPF3A-210ENST00000493727 FXR2P51116 673 aaKnown RBP eCLIP19.82■□□□□ 0.76
UPF3A-210ENST00000493727 PCF11O94913 1555 aaKnown RBP19.82■□□□□ 0.76
UPF3A-210ENST00000493727 LMTK3Q96Q04 1460 aa19.79■□□□□ 0.76
UPF3A-210ENST00000493727 VASPP50552 380 aaPredicted RBP19.78■□□□□ 0.76
UPF3A-210ENST00000493727 FBXO41Q8TF61 875 aa19.78■□□□□ 0.76
UPF3A-210ENST00000493727 FHOD3Q2V2M9 1422 aa19.76■□□□□ 0.75
UPF3A-210ENST00000493727 RIMS1Q86UR5 1692 aaKnown RBP19.76■□□□□ 0.75
UPF3A-210ENST00000493727 CFAP74Q9C0B2 1584 aa19.75■□□□□ 0.75
UPF3A-210ENST00000493727 ZMYM4Q5VZL5 1548 aa19.75■□□□□ 0.75
UPF3A-210ENST00000493727 SIGLEC1Q9BZZ2 1709 aa19.74■□□□□ 0.75
UPF3A-210ENST00000493727 PIP4P2Q8N4L2 257 aa19.74■□□□□ 0.75
UPF3A-210ENST00000493727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.74■□□□□ 0.75
UPF3A-210ENST00000493727 DENND4BO75064 1496 aaPredicted RBP19.73■□□□□ 0.75
UPF3A-210ENST00000493727 EFCAB5A4FU69 1503 aa19.73■□□□□ 0.75
UPF3A-210ENST00000493727 TTC37Q6PGP7 1564 aa19.73■□□□□ 0.75
UPF3A-210ENST00000493727 CREBZFQ9NS37 354 aa19.72■□□□□ 0.75
UPF3A-210ENST00000493727 FANCAO15360 1455 aa19.72■□□□□ 0.75
UPF3A-210ENST00000493727 AKNAQ7Z591 1439 aa19.71■□□□□ 0.75
UPF3A-210ENST00000493727 ARID4BQ4LE39 1312 aaPredicted RBP19.69■□□□□ 0.74
UPF3A-210ENST00000493727 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
UPF3A-210ENST00000493727 MIER1Q8N108 512 aa19.67■□□□□ 0.74
UPF3A-210ENST00000493727 ZFYVE16Q7Z3T8 1539 aa19.66■□□□□ 0.74
UPF3A-210ENST00000493727 YEATS2Q9ULM3 1422 aa19.66■□□□□ 0.74
UPF3A-210ENST00000493727 PLEKHD1A6NEE1 506 aa19.65■□□□□ 0.74
UPF3A-210ENST00000493727 CHADLQ6NUI6 762 aa19.64■□□□□ 0.73
UPF3A-210ENST00000493727 MAGI2Q86UL8 1455 aa19.64■□□□□ 0.73
UPF3A-210ENST00000493727 HECW1Q76N89 1606 aa19.63■□□□□ 0.73
UPF3A-210ENST00000493727 PRKAR2AP13861 404 aaKnown RBP19.63■□□□□ 0.73
UPF3A-210ENST00000493727 PLCD3Q8N3E9 789 aa19.63■□□□□ 0.73
UPF3A-210ENST00000493727 FER1L4A9Z1Z3 1794 aa19.62■□□□□ 0.73
UPF3A-210ENST00000493727 CDK13Q14004 1512 aaKnown RBP19.62■□□□□ 0.73
UPF3A-210ENST00000493727 POGZQ7Z3K3 1410 aa19.61■□□□□ 0.73
UPF3A-210ENST00000493727 UBTFP17480 764 aaKnown RBP19.58■□□□□ 0.72
UPF3A-210ENST00000493727 HSPA2P54652 639 aa19.57■□□□□ 0.72
UPF3A-210ENST00000493727 PLCH2O75038 1416 aa19.57■□□□□ 0.72
UPF3A-210ENST00000493727 ARHGEF12Q9NZN5 1544 aa19.56■□□□□ 0.72
UPF3A-210ENST00000493727 MNX1P50219 401 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-210ENST00000493727 FMN1Q68DA7 1419 aa19.55■□□□□ 0.72
UPF3A-210ENST00000493727 MYO5CQ9NQX4 1742 aa19.55■□□□□ 0.72
UPF3A-210ENST00000493727 SCAPERQ9BY12 1400 aa19.54■□□□□ 0.72
UPF3A-210ENST00000493727 IFNLR1Q8IU57 520 aaPredicted RBP19.54■□□□□ 0.72
UPF3A-210ENST00000493727 C9orf84Q5VXU9 1444 aa19.51■□□□□ 0.71
UPF3A-210ENST00000493727 PLEKHG5O94827 1062 aa19.51■□□□□ 0.71
UPF3A-210ENST00000493727 PREX1Q8TCU6 1659 aa19.51■□□□□ 0.71
UPF3A-210ENST00000493727 ATP10AO60312 1499 aa19.5■□□□□ 0.71
UPF3A-210ENST00000493727 KIF14Q15058 1648 aa19.5■□□□□ 0.71
UPF3A-210ENST00000493727 KDM5CP41229 1560 aa19.49■□□□□ 0.71
UPF3A-210ENST00000493727 ARHGAP35Q9NRY4 1499 aa19.48■□□□□ 0.71
UPF3A-210ENST00000493727 LOC105371045A0A1W2PR82 267 aa19.47■□□□□ 0.71
UPF3A-210ENST00000493727 MLECQ14165 292 aa19.47■□□□□ 0.71
UPF3A-210ENST00000493727 CDK11AQ9UQ88 783 aaPredicted RBP19.46■□□□□ 0.71
UPF3A-210ENST00000493727 FARP1Q9Y4F1 1045 aaPredicted RBP19.46■□□□□ 0.71
UPF3A-210ENST00000493727 ZNF518AQ6AHZ1 1483 aa19.45■□□□□ 0.7
UPF3A-210ENST00000493727 LRRIQ1Q96JM4 1722 aa19.45■□□□□ 0.7
UPF3A-210ENST00000493727 CERKQ8TCT0 537 aa19.44■□□□□ 0.7
UPF3A-210ENST00000493727 STRCQ7RTU9 1775 aa19.44■□□□□ 0.7
UPF3A-210ENST00000493727 ATP1B4Q9UN42 357 aaPredicted RBP19.43■□□□□ 0.7
UPF3A-210ENST00000493727 REREQ9P2R6 1566 aa19.43■□□□□ 0.7
UPF3A-210ENST00000493727 DIP2CQ9Y2E4 1556 aa19.43■□□□□ 0.7
UPF3A-210ENST00000493727 SETD1BQ9UPS6 1966 aaKnown RBP19.43■□□□□ 0.7
UPF3A-210ENST00000493727 EFCAB2Q5VUJ9 269 aa19.42■□□□□ 0.7
UPF3A-210ENST00000493727 TROQ12816 1431 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-210ENST00000493727 ZBTB47Q9UFB7 747 aaPredicted RBP19.41■□□□□ 0.7
UPF3A-210ENST00000493727 CDC42BPBQ9Y5S2 1711 aa19.4■□□□□ 0.7
UPF3A-210ENST00000493727 ARHGAP5Q13017 1502 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms