RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 MAGI1Q96QZ7 1491 aaPredicted RBP17.65■□□□□ 0.42
HMGN1-220ENST00000492280 ABCC5O15440 1437 aa17.65■□□□□ 0.42
HMGN1-220ENST00000492280 CFDP1Q9UEE9 299 aaPredicted RBP17.63■□□□□ 0.41
HMGN1-220ENST00000492280 L3MBTL2Q969R5 705 aa17.61■□□□□ 0.41
HMGN1-220ENST00000492280 CDK11AQ9UQ88 783 aaPredicted RBP17.61■□□□□ 0.41
HMGN1-220ENST00000492280 DNMT1P26358 1616 aaKnown RBP17.6■□□□□ 0.41
HMGN1-220ENST00000492280 SUPT16HQ9Y5B9 1047 aaKnown RBP17.59■□□□□ 0.41
HMGN1-220ENST00000492280 TROQ12816 1431 aaPredicted RBP17.59■□□□□ 0.41
HMGN1-220ENST00000492280 CAMSAP2Q08AD1 1489 aa17.59■□□□□ 0.41
HMGN1-220ENST00000492280 HSPA5P11021 654 aaKnown RBP17.59■□□□□ 0.41
HMGN1-220ENST00000492280 SLC4A1APQ9BWU0 796 aaKnown RBP17.59■□□□□ 0.41
HMGN1-220ENST00000492280 ANP32CO43423 234 aa17.58■□□□□ 0.4
HMGN1-220ENST00000492280 BCANQ96GW7 911 aa17.56■□□□□ 0.4
HMGN1-220ENST00000492280 AKNAQ7Z591 1439 aa17.56■□□□□ 0.4
HMGN1-220ENST00000492280 NUP160Q12769 1436 aa17.56■□□□□ 0.4
HMGN1-220ENST00000492280 GPATCH8Q9UKJ3 1502 aaKnown RBP17.55■□□□□ 0.4
HMGN1-220ENST00000492280 PELP1Q8IZL8 1130 aaKnown RBP17.55■□□□□ 0.4
HMGN1-220ENST00000492280 CARMIL2Q6F5E8 1435 aa17.55■□□□□ 0.4
HMGN1-220ENST00000492280 WASHC2AQ641Q2 1341 aa17.54■□□□□ 0.4
HMGN1-220ENST00000492280 NBPF8Q3BBV2 869 aa17.54■□□□□ 0.4
HMGN1-220ENST00000492280 ZNF326Q5BKZ1 582 aaKnown RBP17.53■□□□□ 0.4
HMGN1-220ENST00000492280 CNGB1Q14028 1251 aaPredicted RBP17.52■□□□□ 0.39
HMGN1-220ENST00000492280 C11orf95C9JLR9 678 aaPredicted RBP17.51■□□□□ 0.39
HMGN1-220ENST00000492280 ANKRD30BQ9BXX2 1392 aa17.5■□□□□ 0.39
HMGN1-220ENST00000492280 ROCK1Q13464 1354 aa17.49■□□□□ 0.39
HMGN1-220ENST00000492280 PLEKHD1A6NEE1 506 aa17.49■□□□□ 0.39
HMGN1-220ENST00000492280 ATP10BO94823 1461 aa17.48■□□□□ 0.39
HMGN1-220ENST00000492280 NCOA1Q15788 1441 aa17.47■□□□□ 0.39
HMGN1-220ENST00000492280 ITSN2Q9NZM3 1697 aa17.47■□□□□ 0.39
HMGN1-220ENST00000492280 EIF4G2P78344 907 aaKnown RBP eCLIP17.47■□□□□ 0.391e-6■□□□□ 9.4
HMGN1-220ENST00000492280 PZPP20742 1482 aa17.47■□□□□ 0.39
HMGN1-220ENST00000492280 CDC42BPAQ5VT25 1732 aa17.46■□□□□ 0.39
HMGN1-220ENST00000492280 HNRNPMP52272 730 aaKnown RBP eCLIP17.46■□□□□ 0.39
HMGN1-220ENST00000492280 RPRD2Q5VT52 1461 aaKnown RBP17.45■□□□□ 0.38
HMGN1-220ENST00000492280 TEX14Q8IWB6 1497 aa17.45■□□□□ 0.38
HMGN1-220ENST00000492280 PKD2Q13563 968 aa17.44■□□□□ 0.38
HMGN1-220ENST00000492280 ABCA8O94911 1581 aa17.44■□□□□ 0.38
HMGN1-220ENST00000492280 CCDC184Q52MB2 194 aa17.43■□□□□ 0.38
HMGN1-220ENST00000492280 POLR3GLQ9BT43 218 aa17.43■□□□□ 0.38
HMGN1-220ENST00000492280 ADCY10Q96PN6 1610 aa17.43■□□□□ 0.38
HMGN1-220ENST00000492280 FKBP8Q14318 412 aa17.42■□□□□ 0.38
HMGN1-220ENST00000492280 CHD1O14646 1710 aa17.42■□□□□ 0.38
HMGN1-220ENST00000492280 ADGBQ8N7X0 1667 aa17.42■□□□□ 0.38
HMGN1-220ENST00000492280 CROCC2H7BZ55 1655 aa17.41■□□□□ 0.38
HMGN1-220ENST00000492280 CCER2I3L3R5 266 aa17.41■□□□□ 0.38
HMGN1-220ENST00000492280 PTPRGP23470 1445 aa17.41■□□□□ 0.38
HMGN1-220ENST00000492280 ABCC10Q5T3U5 1492 aa17.4■□□□□ 0.38
HMGN1-220ENST00000492280 ANKRD50Q9ULJ7 1429 aa17.39■□□□□ 0.38
HMGN1-220ENST00000492280 ERCC6L2Q5T890 1561 aa17.39■□□□□ 0.37
HMGN1-220ENST00000492280 ANKRD30AQ9BXX3 1397 aa17.38■□□□□ 0.37
HMGN1-220ENST00000492280 C9orf84Q5VXU9 1444 aa17.38■□□□□ 0.37
HMGN1-220ENST00000492280 HNRNPUQ00839 825 aaKnown RBP eCLIP17.37■□□□□ 0.37
HMGN1-220ENST00000492280 NUP155O75694 1391 aa17.37■□□□□ 0.37
HMGN1-220ENST00000492280 CCDC7Q96M83 1385 aa17.35■□□□□ 0.37
HMGN1-220ENST00000492280 SENP3-EIF4A1A0A087X0R7 540 aa17.34■□□□□ 0.37
HMGN1-220ENST00000492280 KIAA1107Q9UPP5 1409 aa17.34■□□□□ 0.37
HMGN1-220ENST00000492280 KDM2AQ9Y2K7 1162 aa17.34■□□□□ 0.37
HMGN1-220ENST00000492280 ADGRL2O95490 1459 aa17.34■□□□□ 0.37
HMGN1-220ENST00000492280 TSPY4P0CV99 314 aa17.34■□□□□ 0.37
HMGN1-220ENST00000492280 TSPY10P0CW01 314 aa17.34■□□□□ 0.37
HMGN1-220ENST00000492280 KIF7Q2M1P5 1343 aa17.33■□□□□ 0.37
HMGN1-220ENST00000492280 CNTLNQ9NXG0 1405 aa17.33■□□□□ 0.36
HMGN1-220ENST00000492280 KIF15Q9NS87 1388 aa17.32■□□□□ 0.36
HMGN1-220ENST00000492280 IRX6P78412 446 aaPredicted RBP17.32■□□□□ 0.36
HMGN1-220ENST00000492280 FAM9BQ8IZU0 186 aa17.31■□□□□ 0.36
HMGN1-220ENST00000492280 CDC42BPBQ9Y5S2 1711 aa17.3■□□□□ 0.36
HMGN1-220ENST00000492280 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.3■□□□□ 0.361e-6■■□□□ 12.8
HMGN1-220ENST00000492280 SAMD9LQ8IVG5 1584 aa17.29■□□□□ 0.36
HMGN1-220ENST00000492280 TTC37Q6PGP7 1564 aa17.29■□□□□ 0.36
HMGN1-220ENST00000492280 SPATA31E1Q6ZUB1 1445 aa17.27■□□□□ 0.36
HMGN1-220ENST00000492280 SYCP2Q9BX26 1530 aa17.27■□□□□ 0.35
HMGN1-220ENST00000492280 PRKRIP1Q9H875 184 aaPredicted RBP17.27■□□□□ 0.35
HMGN1-220ENST00000492280 USP47Q96K76 1375 aa17.26■□□□□ 0.35
HMGN1-220ENST00000492280 MBD5Q9P267 1494 aa17.26■□□□□ 0.35
HMGN1-220ENST00000492280 MRS2Q9HD23 443 aa17.25■□□□□ 0.35
HMGN1-220ENST00000492280 BCORL1Q5H9F3 1711 aa17.25■□□□□ 0.35
HMGN1-220ENST00000492280 ARHGAP5Q13017 1502 aa17.24■□□□□ 0.35
HMGN1-220ENST00000492280 NEFLP07196 543 aa17.23■□□□□ 0.35
HMGN1-220ENST00000492280 RGL3Q3MIN7 710 aa17.23■□□□□ 0.35
HMGN1-220ENST00000492280 DCAF11Q8TEB1 546 aa17.23■□□□□ 0.35
HMGN1-220ENST00000492280 SHANK2Q9UPX8 1470 aa17.23■□□□□ 0.35
HMGN1-220ENST00000492280 PREX2Q70Z35 1606 aa17.23■□□□□ 0.35
HMGN1-220ENST00000492280 TSHZ2Q9NRE2 1034 aa17.22■□□□□ 0.35
HMGN1-220ENST00000492280 CCDC141Q6ZP82 1450 aa17.22■□□□□ 0.35
HMGN1-220ENST00000492280 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.21■□□□□ 0.351e-6■■■■□ 20.1
HMGN1-220ENST00000492280 CARD11Q9BXL7 1154 aa17.2■□□□□ 0.34
HMGN1-220ENST00000492280 SHROOM2Q13796 1616 aa17.17■□□□□ 0.34
HMGN1-220ENST00000492280 ARHGEF5Q12774 1597 aa17.17■□□□□ 0.34
HMGN1-220ENST00000492280 FAM135AQ9P2D6 1515 aa17.17■□□□□ 0.34
HMGN1-220ENST00000492280 KDM5CP41229 1560 aa17.16■□□□□ 0.34
HMGN1-220ENST00000492280 ST20-MTHFSA0A0A6YYL1 179 aa17.16■□□□□ 0.34
HMGN1-220ENST00000492280 POLR1AO95602 1720 aaPredicted RBP17.15■□□□□ 0.34
HMGN1-220ENST00000492280 ABCC2Q92887 1545 aa17.15■□□□□ 0.34
HMGN1-220ENST00000492280 ARHGEF12Q9NZN5 1544 aa17.15■□□□□ 0.34
HMGN1-220ENST00000492280 PLEKHH2Q8IVE3 1493 aa17.14■□□□□ 0.34
HMGN1-220ENST00000492280 DHX29Q7Z478 1369 aaKnown RBP17.12■□□□□ 0.33
HMGN1-220ENST00000492280 MYO5CQ9NQX4 1742 aa17.12■□□□□ 0.33
HMGN1-220ENST00000492280 NBPF1Q3BBV0 1214 aa17.12■□□□□ 0.33
HMGN1-220ENST00000492280 KDM5DQ9BY66 1539 aa17.11■□□□□ 0.33
HMGN1-220ENST00000492280 RALGAPBQ86X10 1494 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms