RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-215ENST00000491592 EMP3P54852 163 aa10.02□□□□□ -0.81
RTN4-215ENST00000491592 GTPBP6O43824 516 aaPredicted RBP10.01□□□□□ -0.81
RTN4-215ENST00000491592 RYDENQ9NUL5 291 aaKnown RBP10□□□□□ -0.81
RTN4-215ENST00000491592 EFCAB3Q8N7B9 438 aa9.98□□□□□ -0.81
RTN4-215ENST00000491592 SPNS2Q8IVW8 549 aa9.96□□□□□ -0.82
RTN4-215ENST00000491592 MFRPQ9BY79 579 aa9.96□□□□□ -0.82
RTN4-215ENST00000491592 SOX12O15370 315 aa9.94□□□□□ -0.82
RTN4-215ENST00000491592 HS3ST6Q96QI5 342 aa9.94□□□□□ -0.82
RTN4-215ENST00000491592 FAM205CA6NFA0 338 aa9.93□□□□□ -0.82
RTN4-215ENST00000491592 MMRN1Q13201 1228 aa9.93□□□□□ -0.82
RTN4-215ENST00000491592 DOK7Q18PE1 504 aa9.93□□□□□ -0.82
RTN4-215ENST00000491592 ZNF710Q8N1W2 664 aa9.93□□□□□ -0.82
RTN4-215ENST00000491592 TSHZ2Q9NRE2 1034 aa9.93□□□□□ -0.82
RTN4-215ENST00000491592 PHF8Q9UPP1 1060 aa9.92□□□□□ -0.82
RTN4-215ENST00000491592 HOXB3P14651 431 aaPredicted RBP9.91□□□□□ -0.82
RTN4-215ENST00000491592 NLRP6P59044 892 aa9.91□□□□□ -0.82
RTN4-215ENST00000491592 FBXO22Q8NEZ5 403 aa9.9□□□□□ -0.82
RTN4-215ENST00000491592 RIMBP2O15034 1052 aa9.89□□□□□ -0.83
RTN4-215ENST00000491592 HOXB1P14653 301 aaPredicted RBP9.89□□□□□ -0.83
RTN4-215ENST00000491592 VSIG10Q8N0Z9 540 aa9.89□□□□□ -0.83
RTN4-215ENST00000491592 MICALL2Q8IY33 904 aa9.87□□□□□ -0.83
RTN4-215ENST00000491592 POTEB3A0JP26 581 aa9.86□□□□□ -0.83
RTN4-215ENST00000491592 POTEBQ6S5H4 581 aa9.86□□□□□ -0.83
RTN4-215ENST00000491592 MS4A4AQ96JQ5 239 aa9.85□□□□□ -0.83
RTN4-215ENST00000491592 KRTAP3-3Q9BYR6 98 aa9.85□□□□□ -0.83
RTN4-215ENST00000491592 KRTAP3-2Q9BYR7 98 aa9.85□□□□□ -0.83
RTN4-215ENST00000491592 ERBB3P21860 1342 aa9.83□□□□□ -0.84
RTN4-215ENST00000491592 ZSWIM6Q9HCJ5 1215 aa9.83□□□□□ -0.84
RTN4-215ENST00000491592 KDM2AQ9Y2K7 1162 aa9.83□□□□□ -0.84
RTN4-215ENST00000491592 PPP1R37O75864 691 aa9.82□□□□□ -0.84
RTN4-215ENST00000491592 TMEM92Q6UXU6 159 aa9.79□□□□□ -0.84
RTN4-215ENST00000491592 CADPS2Q86UW7 1296 aa9.76□□□□□ -0.85
RTN4-215ENST00000491592 VARS2Q5ST30 1063 aaKnown RBP9.74□□□□□ -0.85
RTN4-215ENST00000491592 GPR153Q6NV75 609 aa9.73□□□□□ -0.85
RTN4-215ENST00000491592 ZNF687Q8N1G0 1237 aa9.7□□□□□ -0.86
RTN4-215ENST00000491592 ARSIQ5FYB1 569 aa9.67□□□□□ -0.86
RTN4-215ENST00000491592 NCKAP5LQ9HCH0 1330 aa9.65□□□□□ -0.86
RTN4-215ENST00000491592 RNF166Q96A37 237 aaPredicted RBP9.63□□□□□ -0.87
RTN4-215ENST00000491592 CRISPLD2Q9H0B8 497 aa9.63□□□□□ -0.87
RTN4-215ENST00000491592 WDR70Q9NW82 654 aa9.63□□□□□ -0.87
RTN4-215ENST00000491592 ZNF316A6NFI3 1004 aaPredicted RBP9.62□□□□□ -0.87
RTN4-215ENST00000491592 KIF3CO14782 793 aa9.62□□□□□ -0.87
RTN4-215ENST00000491592 PTGER2P43116 358 aa9.62□□□□□ -0.87
RTN4-215ENST00000491592 BCANQ96GW7 911 aa9.62□□□□□ -0.87
RTN4-215ENST00000491592 MYT1LQ9UL68 1186 aa9.62□□□□□ -0.87
RTN4-215ENST00000491592 C2orf72A6NCS6 295 aa9.61□□□□□ -0.87
RTN4-215ENST00000491592 PDE4AP27815 886 aa9.6□□□□□ -0.87
RTN4-215ENST00000491592 MFSD10Q14728 455 aa9.6□□□□□ -0.87
RTN4-215ENST00000491592 P3H3Q8IVL6 736 aa9.6□□□□□ -0.87
RTN4-215ENST00000491592 LARP6Q9BRS8 491 aaKnown RBP9.59□□□□□ -0.87
RTN4-215ENST00000491592 TMC2Q8TDI7 906 aa9.58□□□□□ -0.88
RTN4-215ENST00000491592 KHSRPQ92945 711 aaKnown RBP eCLIP9.58□□□□□ -0.881e-8■■□□□ 13.1
RTN4-215ENST00000491592 SLC34A2O95436 690 aa9.57□□□□□ -0.88
RTN4-215ENST00000491592 KCNV2Q8TDN2 545 aa9.57□□□□□ -0.88
RTN4-215ENST00000491592 DDX27Q96GQ7 796 aaKnown RBP9.57□□□□□ -0.88
RTN4-215ENST00000491592 ANKRD13DQ6ZTN6 518 aa9.55□□□□□ -0.88
RTN4-215ENST00000491592 GPHNQ9NQX3 736 aaPredicted RBP9.55□□□□□ -0.88
RTN4-215ENST00000491592 NUDT7P0C024 238 aa9.54□□□□□ -0.88
RTN4-215ENST00000491592 PBX2P40425 430 aa9.54□□□□□ -0.88
RTN4-215ENST00000491592 NBR1Q14596 966 aa9.54□□□□□ -0.88
RTN4-215ENST00000491592 E2F4Q16254 413 aa9.53□□□□□ -0.88
RTN4-215ENST00000491592 PPP1R15BQ5SWA1 713 aa9.53□□□□□ -0.88
RTN4-215ENST00000491592 PCDHGA4Q9Y5G9 962 aa9.53□□□□□ -0.88
RTN4-215ENST00000491592 LSM11P83369 360 aaKnown RBP eCLIP9.52□□□□□ -0.89
RTN4-215ENST00000491592 DSG2Q14126 1118 aa9.5□□□□□ -0.89
RTN4-215ENST00000491592 LHX6Q9UPM6 363 aa9.5□□□□□ -0.89
RTN4-215ENST00000491592 PSDA5PKW4 1024 aaPredicted RBP9.49□□□□□ -0.89
RTN4-215ENST00000491592 FOXK1P85037 733 aa9.49□□□□□ -0.89
RTN4-215ENST00000491592 CAMK2BQ13554 666 aa9.48□□□□□ -0.89
RTN4-215ENST00000491592 ARHGEF1Q92888 912 aaKnown RBP9.46□□□□□ -0.9
RTN4-215ENST00000491592 PLPP6Q8IY26 295 aa9.45□□□□□ -0.9
RTN4-215ENST00000491592 PTCD2Q8WV60 388 aaKnown RBP9.44□□□□□ -0.9
RTN4-215ENST00000491592 ARHGAP33O14559 1287 aa9.42□□□□□ -0.9
RTN4-215ENST00000491592 ARIH1Q9Y4X5 557 aaPredicted RBP9.42□□□□□ -0.9
RTN4-215ENST00000491592 TBC1D12O60347 775 aa9.41□□□□□ -0.9
RTN4-215ENST00000491592 POTEEQ6S8J3 1075 aa9.41□□□□□ -0.9
RTN4-215ENST00000491592 EMILIN3Q9NT22 766 aa9.41□□□□□ -0.9
RTN4-215ENST00000491592 AXIN2Q9Y2T1 843 aa9.41□□□□□ -0.9
RTN4-215ENST00000491592 KDM4FA0A1W2PPD8 638 aa9.38□□□□□ -0.91
RTN4-215ENST00000491592 DPYSL4O14531 572 aa9.37□□□□□ -0.91
RTN4-215ENST00000491592 ADGRD1Q6QNK2 874 aa9.37□□□□□ -0.91
RTN4-215ENST00000491592 TK2O00142 265 aa9.36□□□□□ -0.91
RTN4-215ENST00000491592 PPP4R3BQ5MIZ7 849 aa9.36□□□□□ -0.91
RTN4-215ENST00000491592 UPF1Q92900 1129 aaKnown RBP eCLIP9.35□□□□□ -0.913e-6■■□□□ 12.5
RTN4-215ENST00000491592 HCSTQ9UBK5 93 aa9.35□□□□□ -0.91
RTN4-215ENST00000491592 SEMA3EO15041 775 aa9.34□□□□□ -0.91
RTN4-215ENST00000491592 PDIA6Q15084 440 aa9.34□□□□□ -0.91
RTN4-215ENST00000491592 KCNH8Q96L42 1107 aa9.33□□□□□ -0.92
RTN4-215ENST00000491592 TESPA1A2RU30 521 aaPredicted RBP9.32□□□□□ -0.92
RTN4-215ENST00000491592 OXER1Q8TDS5 423 aa9.32□□□□□ -0.92
RTN4-215ENST00000491592 STAC3Q96MF2 364 aa9.31□□□□□ -0.92
RTN4-215ENST00000491592 SPDYE16A6NNV3 312 aaPredicted RBP9.3□□□□□ -0.92
RTN4-215ENST00000491592 TULP1O00294 542 aaPredicted RBP9.29□□□□□ -0.92
RTN4-215ENST00000491592 PSEN2P49810 448 aa9.29□□□□□ -0.92
RTN4-215ENST00000491592 MAP3K9P80192 1104 aa9.29□□□□□ -0.92
RTN4-215ENST00000491592 HRO43593 1189 aa9.28□□□□□ -0.92
RTN4-215ENST00000491592 DMRTA1Q5VZB9 504 aa9.28□□□□□ -0.92
RTN4-215ENST00000491592 PLA2G2EQ9NZK7 142 aa9.28□□□□□ -0.92
RTN4-215ENST00000491592 TPRNQ4KMQ1 711 aa9.27□□□□□ -0.93
RTN4-215ENST00000491592 LMOD2Q6P5Q4 547 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms