RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 HECW2Q9P2P5 1572 aa14.86□□□□□ -0.03
USP4-213ENST00000488520 POTEHQ6S545 545 aa14.84□□□□□ -0.03
USP4-213ENST00000488520 CLEC11AQ9Y240 323 aa14.83□□□□□ -0.04
USP4-213ENST00000488520 WDR7Q9Y4E6 1490 aa14.82□□□□□ -0.04
USP4-213ENST00000488520 KIF21BO75037 1637 aa14.81□□□□□ -0.04
USP4-213ENST00000488520 KCNH8Q96L42 1107 aa14.81□□□□□ -0.04
USP4-213ENST00000488520 ABCA8O94911 1581 aa14.78□□□□□ -0.04
USP4-213ENST00000488520 CD109Q6YHK3 1445 aa14.77□□□□□ -0.04
USP4-213ENST00000488520 GOLGA3Q08378 1498 aa14.76□□□□□ -0.05
USP4-213ENST00000488520 MAGI3Q5TCQ9 1506 aa14.75□□□□□ -0.05
USP4-213ENST00000488520 ARID3CA6NKF2 412 aa14.73□□□□□ -0.05
USP4-213ENST00000488520 PIP4P2Q8N4L2 257 aa14.72□□□□□ -0.05
USP4-213ENST00000488520 FXR2P51116 673 aaKnown RBP eCLIP14.71□□□□□ -0.05
USP4-213ENST00000488520 FKBP8Q14318 412 aa14.7□□□□□ -0.06
USP4-213ENST00000488520 P3H3Q8IVL6 736 aa14.7□□□□□ -0.06
USP4-213ENST00000488520 PROM2Q8N271 834 aa14.68□□□□□ -0.06
USP4-213ENST00000488520 ABCA9Q8IUA7 1624 aa14.66□□□□□ -0.06
USP4-213ENST00000488520 STAG3Q9UJ98 1225 aa14.66□□□□□ -0.06
USP4-213ENST00000488520 PRXQ9BXM0 1461 aa14.65□□□□□ -0.06
USP4-213ENST00000488520 PRR29P0C7W0 189 aa14.65□□□□□ -0.06
USP4-213ENST00000488520 ARAP3Q8WWN8 1544 aa14.65□□□□□ -0.06
USP4-213ENST00000488520 ADAMTSL3P82987 1691 aa14.65□□□□□ -0.06
USP4-213ENST00000488520 ATP10BO94823 1461 aa14.64□□□□□ -0.07
USP4-213ENST00000488520 RAPGEF6Q8TEU7 1601 aa14.64□□□□□ -0.07
USP4-213ENST00000488520 BCORL1Q5H9F3 1711 aa14.62□□□□□ -0.07
USP4-213ENST00000488520 FAM9AQ8IZU1 332 aaPredicted RBP14.62□□□□□ -0.07
USP4-213ENST00000488520 SAMD9Q5K651 1589 aa14.6□□□□□ -0.07
USP4-213ENST00000488520 MADDQ8WXG6 1647 aa14.59□□□□□ -0.07
USP4-213ENST00000488520 RAPGEF3O95398 923 aa14.59□□□□□ -0.07
USP4-213ENST00000488520 RIMS1Q86UR5 1692 aaKnown RBP14.58□□□□□ -0.07
USP4-213ENST00000488520 PTPRMP28827 1452 aa14.58□□□□□ -0.08
USP4-213ENST00000488520 FRMPD1Q5SYB0 1578 aa14.58□□□□□ -0.08
USP4-213ENST00000488520 RANGAP1P46060 587 aaPredicted RBP14.57□□□□□ -0.08
USP4-213ENST00000488520 RICTORQ6R327 1708 aa14.57□□□□□ -0.08
USP4-213ENST00000488520 PRKAR2AP13861 404 aaKnown RBP14.56□□□□□ -0.08
USP4-213ENST00000488520 ARID4BQ4LE39 1312 aaPredicted RBP14.54□□□□□ -0.08
USP4-213ENST00000488520 NEO1Q92859 1461 aa14.54□□□□□ -0.08
USP4-213ENST00000488520 PHLDB1Q86UU1 1377 aa14.53□□□□□ -0.08
USP4-213ENST00000488520 FBXO41Q8TF61 875 aa14.51□□□□□ -0.09
USP4-213ENST00000488520 SIGLEC1Q9BZZ2 1709 aa14.51□□□□□ -0.09
USP4-213ENST00000488520 NUP153P49790 1475 aaKnown RBP14.5□□□□□ -0.09
USP4-213ENST00000488520 PCF11O94913 1555 aaKnown RBP14.5□□□□□ -0.09
USP4-213ENST00000488520 ARHGEF40Q8TER5 1519 aa14.5□□□□□ -0.09
USP4-213ENST00000488520 FHOD3Q2V2M9 1422 aa14.49□□□□□ -0.09
USP4-213ENST00000488520 CFAP74Q9C0B2 1584 aa14.49□□□□□ -0.09
USP4-213ENST00000488520 FER1L4A9Z1Z3 1794 aa14.49□□□□□ -0.09
USP4-213ENST00000488520 CHADLQ6NUI6 762 aa14.48□□□□□ -0.09
USP4-213ENST00000488520 TTC37Q6PGP7 1564 aa14.47□□□□□ -0.09
USP4-213ENST00000488520 LMTK3Q96Q04 1460 aa14.46□□□□□ -0.09
USP4-213ENST00000488520 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.46□□□□□ -0.1
USP4-213ENST00000488520 DENND4BO75064 1496 aaPredicted RBP14.45□□□□□ -0.1
USP4-213ENST00000488520 AKNAQ7Z591 1439 aa14.45□□□□□ -0.1
USP4-213ENST00000488520 FANCAO15360 1455 aa14.44□□□□□ -0.1
USP4-213ENST00000488520 PLEKHD1A6NEE1 506 aa14.44□□□□□ -0.1
USP4-213ENST00000488520 MYO5CQ9NQX4 1742 aa14.42□□□□□ -0.1
USP4-213ENST00000488520 HSPA2P54652 639 aa14.42□□□□□ -0.1
USP4-213ENST00000488520 ZFYVE16Q7Z3T8 1539 aa14.41□□□□□ -0.1
USP4-213ENST00000488520 HECW1Q76N89 1606 aa14.41□□□□□ -0.1
USP4-213ENST00000488520 CDK13Q14004 1512 aaKnown RBP14.41□□□□□ -0.1
USP4-213ENST00000488520 MLECQ14165 292 aa14.4□□□□□ -0.1
USP4-213ENST00000488520 EFCAB5A4FU69 1503 aa14.4□□□□□ -0.1
USP4-213ENST00000488520 ZMYM4Q5VZL5 1548 aa14.4□□□□□ -0.1
USP4-213ENST00000488520 CREBZFQ9NS37 354 aa14.39□□□□□ -0.11
USP4-213ENST00000488520 YEATS2Q9ULM3 1422 aa14.39□□□□□ -0.11
USP4-213ENST00000488520 POGZQ7Z3K3 1410 aa14.38□□□□□ -0.11
USP4-213ENST00000488520 PREX1Q8TCU6 1659 aa14.36□□□□□ -0.11
USP4-213ENST00000488520 LRRIQ1Q96JM4 1722 aa14.36□□□□□ -0.11
USP4-213ENST00000488520 EEA1Q15075 1411 aa14.36□□□□□ -0.11
USP4-213ENST00000488520 SETD1BQ9UPS6 1966 aaKnown RBP14.34□□□□□ -0.11
USP4-213ENST00000488520 ATP1B4Q9UN42 357 aaPredicted RBP14.34□□□□□ -0.11
USP4-213ENST00000488520 KIF14Q15058 1648 aa14.33□□□□□ -0.11
USP4-213ENST00000488520 SCAPERQ9BY12 1400 aa14.33□□□□□ -0.11
USP4-213ENST00000488520 HAX1O00165 279 aa14.33□□□□□ -0.12
USP4-213ENST00000488520 FARP1Q9Y4F1 1045 aaPredicted RBP14.33□□□□□ -0.12
USP4-213ENST00000488520 MAGI2Q86UL8 1455 aa14.32□□□□□ -0.12
USP4-213ENST00000488520 STRCQ7RTU9 1775 aa14.32□□□□□ -0.12
USP4-213ENST00000488520 PLCH2O75038 1416 aa14.31□□□□□ -0.12
USP4-213ENST00000488520 CDC42BPBQ9Y5S2 1711 aa14.3□□□□□ -0.12
USP4-213ENST00000488520 FBXO3Q9UK99 471 aa14.29□□□□□ -0.12
USP4-213ENST00000488520 ATP10AO60312 1499 aa14.28□□□□□ -0.12
USP4-213ENST00000488520 CERKQ8TCT0 537 aa14.28□□□□□ -0.12
USP4-213ENST00000488520 ARHGEF12Q9NZN5 1544 aa14.28□□□□□ -0.12
USP4-213ENST00000488520 CEBPAP49715 358 aaPredicted RBP14.27□□□□□ -0.13
USP4-213ENST00000488520 C3P01024 1663 aa14.26□□□□□ -0.13
USP4-213ENST00000488520 C9orf84Q5VXU9 1444 aa14.26□□□□□ -0.13
USP4-213ENST00000488520 UBTFP17480 764 aaKnown RBP14.26□□□□□ -0.13
USP4-213ENST00000488520 MYT1LQ9UL68 1186 aa14.26□□□□□ -0.13
USP4-213ENST00000488520 ARHGAP5Q13017 1502 aa14.25□□□□□ -0.13
USP4-213ENST00000488520 EFCAB2Q5VUJ9 269 aa14.25□□□□□ -0.13
USP4-213ENST00000488520 ABCA6Q8N139 1617 aa14.23□□□□□ -0.13
USP4-213ENST00000488520 MIER1Q8N108 512 aa14.23□□□□□ -0.13
USP4-213ENST00000488520 ARHGAP35Q9NRY4 1499 aa14.23□□□□□ -0.13
USP4-213ENST00000488520 FMN1Q68DA7 1419 aa14.23□□□□□ -0.13
USP4-213ENST00000488520 DIP2CQ9Y2E4 1556 aa14.22□□□□□ -0.13
USP4-213ENST00000488520 CDC42BPAQ5VT25 1732 aa14.22□□□□□ -0.13
USP4-213ENST00000488520 C19orf67A6NJJ6 358 aa14.22□□□□□ -0.13
USP4-213ENST00000488520 PLEKHG5O94827 1062 aa14.22□□□□□ -0.13
USP4-213ENST00000488520 ZNF518AQ6AHZ1 1483 aa14.22□□□□□ -0.13
USP4-213ENST00000488520 ITSN2Q9NZM3 1697 aa14.22□□□□□ -0.13
USP4-213ENST00000488520 KDM5CP41229 1560 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms