RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, human

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-215	ENST00000487620	FANCI	Q9NVI1	1328 aa		13.45	□□□□□ -0.26
ZNF3-215	ENST00000487620	NCOA1	Q15788	1441 aa		13.45	□□□□□ -0.26
ZNF3-215	ENST00000487620	ERICH6	Q7L0X2	663 aa		13.45	□□□□□ -0.26
ZNF3-215	ENST00000487620	NBPF8	Q3BBV2	869 aa		13.43	□□□□□ -0.26
ZNF3-215	ENST00000487620	MIA2	Q96PC5	1412 aa		13.43	□□□□□ -0.26
ZNF3-215	ENST00000487620	ERICH6B	Q5W0A0	696 aa		13.43	□□□□□ -0.26
ZNF3-215	ENST00000487620	IQGAP2	Q13576	1575 aa		13.42	□□□□□ -0.26
ZNF3-215	ENST00000487620	PDS5B	Q9NTI5	1447 aa		13.42	□□□□□ -0.26
ZNF3-215	ENST00000487620	CNGB1	Q14028	1251 aa	Predicted RBP	13.41	□□□□□ -0.26
ZNF3-215	ENST00000487620	B4GALNT3	Q6L9W6	998 aa		13.41	□□□□□ -0.26
ZNF3-215	ENST00000487620	ZBED9	Q6R2W3	1325 aa		13.41	□□□□□ -0.26
ZNF3-215	ENST00000487620	PBRM1	Q86U86	1689 aa		13.41	□□□□□ -0.26
ZNF3-215	ENST00000487620	TARBP1	Q13395	1621 aa	Known RBP	13.4	□□□□□ -0.26
ZNF3-215	ENST00000487620	RPRD2	Q5VT52	1461 aa	Known RBP	13.4	□□□□□ -0.26
ZNF3-215	ENST00000487620	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.4	□□□□□ -0.26
ZNF3-215	ENST00000487620	KIF7	Q2M1P5	1343 aa		13.4	□□□□□ -0.26
ZNF3-215	ENST00000487620	ANKRD30B	Q9BXX2	1392 aa		13.4	□□□□□ -0.26
ZNF3-215	ENST00000487620	DAPK1	P53355	1430 aa		13.39	□□□□□ -0.27
ZNF3-215	ENST00000487620	WDR62	O43379	1518 aa		13.39	□□□□□ -0.27
ZNF3-215	ENST00000487620	TEX14	Q8IWB6	1497 aa		13.38	□□□□□ -0.27
ZNF3-215	ENST00000487620	POLR1A	O95602	1720 aa	Predicted RBP	13.38	□□□□□ -0.27
ZNF3-215	ENST00000487620	ZNF644	Q9H582	1327 aa	Predicted RBP	13.37	□□□□□ -0.27
ZNF3-215	ENST00000487620	POLR3GL	Q9BT43	218 aa		13.36	□□□□□ -0.27
ZNF3-215	ENST00000487620	ROCK1	Q13464	1354 aa		13.35	□□□□□ -0.27
ZNF3-215	ENST00000487620	DNMT1	P26358	1616 aa	Known RBP	13.35	□□□□□ -0.27
ZNF3-215	ENST00000487620	ABCC5	O15440	1437 aa		13.35	□□□□□ -0.27
ZNF3-215	ENST00000487620	SPATA31E1	Q6ZUB1	1445 aa		13.34	□□□□□ -0.27
ZNF3-215	ENST00000487620	ZNF326	Q5BKZ1	582 aa	Known RBP	13.34	□□□□□ -0.27
ZNF3-215	ENST00000487620	ADAMTS12	P58397	1594 aa		13.34	□□□□□ -0.27
ZNF3-215	ENST00000487620	SENP3-EIF4A1	A0A087X0R7	540 aa		13.31	□□□□□ -0.28
ZNF3-215	ENST00000487620	USP47	Q96K76	1375 aa		13.28	□□□□□ -0.28
ZNF3-215	ENST00000487620	PZP	P20742	1482 aa		13.27	□□□□□ -0.28
ZNF3-215	ENST00000487620	NUP153	P49790	1475 aa	Known RBP	13.27	□□□□□ -0.28
ZNF3-215	ENST00000487620	BCORL1	Q5H9F3	1711 aa		13.27	□□□□□ -0.28
ZNF3-215	ENST00000487620	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.27	□□□□□ -0.28
ZNF3-215	ENST00000487620	DHX29	Q7Z478	1369 aa	Known RBP	13.27	□□□□□ -0.28
ZNF3-215	ENST00000487620	SMG6	Q86US8	1419 aa	Known RBP	13.27	□□□□□ -0.29
ZNF3-215	ENST00000487620	KIAA0556	O60303	1618 aa		13.26	□□□□□ -0.29
ZNF3-215	ENST00000487620	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.26	□□□□□ -0.29
ZNF3-215	ENST00000487620	RAPGEF6	Q8TEU7	1601 aa		13.26	□□□□□ -0.29
ZNF3-215	ENST00000487620	NUDC	Q9Y266	331 aa		13.26	□□□□□ -0.29
ZNF3-215	ENST00000487620	CAMSAP2	Q08AD1	1489 aa		13.25	□□□□□ -0.29
ZNF3-215	ENST00000487620	DISP1	Q96F81	1524 aa		13.25	□□□□□ -0.29
ZNF3-215	ENST00000487620	CCDC136	Q96JN2	1154 aa		13.25	□□□□□ -0.29
ZNF3-215	ENST00000487620	PKD2	Q13563	968 aa		13.24	□□□□□ -0.29
ZNF3-215	ENST00000487620	PRG4	Q92954	1404 aa	Predicted RBP	13.24	□□□□□ -0.29
ZNF3-215	ENST00000487620	ADGB	Q8N7X0	1667 aa		13.24	□□□□□ -0.29
ZNF3-215	ENST00000487620	MBD5	Q9P267	1494 aa		13.23	□□□□□ -0.29
ZNF3-215	ENST00000487620	KIAA1107	Q9UPP5	1409 aa		13.23	□□□□□ -0.29
ZNF3-215	ENST00000487620	KIF14	Q15058	1648 aa		13.23	□□□□□ -0.29
ZNF3-215	ENST00000487620	TMC1	Q8TDI8	760 aa		13.22	□□□□□ -0.29
ZNF3-215	ENST00000487620	KIAA0586	Q9BVV6	1533 aa		13.22	□□□□□ -0.29
ZNF3-215	ENST00000487620	KDM5C	P41229	1560 aa		13.22	□□□□□ -0.29
ZNF3-215	ENST00000487620	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.21	□□□□□ -0.29
ZNF3-215	ENST00000487620	NOP58	Q9Y2X3	529 aa	Known RBP	13.21	□□□□□ -0.29
ZNF3-215	ENST00000487620	ITSN2	Q9NZM3	1697 aa		13.21	□□□□□ -0.29
ZNF3-215	ENST00000487620	TRO	Q12816	1431 aa	Predicted RBP	13.2	□□□□□ -0.3
ZNF3-215	ENST00000487620	MRC2	Q9UBG0	1479 aa		13.19	□□□□□ -0.3
ZNF3-215	ENST00000487620	NBR1	Q14596	966 aa		13.19	□□□□□ -0.3
ZNF3-215	ENST00000487620	PNISR	Q8TF01	805 aa	Known RBP	13.19	□□□□□ -0.3
ZNF3-215	ENST00000487620	CARD11	Q9BXL7	1154 aa		13.19	□□□□□ -0.3
ZNF3-215	ENST00000487620	CROCC2	H7BZ55	1655 aa		13.18	□□□□□ -0.3
ZNF3-215	ENST00000487620	PAK3	O75914	559 aa	Predicted RBP	13.18	□□□□□ -0.3
ZNF3-215	ENST00000487620	RNF123	Q5XPI4	1314 aa		13.18	□□□□□ -0.3
ZNF3-215	ENST00000487620	ANKRD30A	Q9BXX3	1397 aa		13.18	□□□□□ -0.3
ZNF3-215	ENST00000487620	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.18	□□□□□ -0.3
ZNF3-215	ENST00000487620	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.18	□□□□□ -0.3
ZNF3-215	ENST00000487620	MYT1L	Q9UL68	1186 aa		13.17	□□□□□ -0.3
ZNF3-215	ENST00000487620	KDM2A	Q9Y2K7	1162 aa		13.17	□□□□□ -0.3
ZNF3-215	ENST00000487620	ANKRD50	Q9ULJ7	1429 aa		13.16	□□□□□ -0.3
ZNF3-215	ENST00000487620	DEK	P35659	375 aa	Known RBP	13.16	□□□□□ -0.3
ZNF3-215	ENST00000487620	PLB1	Q6P1J6	1458 aa		13.16	□□□□□ -0.3
ZNF3-215	ENST00000487620	ROCK2	O75116	1388 aa	Known RBP	13.16	□□□□□ -0.3
ZNF3-215	ENST00000487620	ADGRL2	O95490	1459 aa		13.16	□□□□□ -0.3
ZNF3-215	ENST00000487620	ANP32A	P39687	249 aa	Known RBP	13.16	□□□□□ -0.3
ZNF3-215	ENST00000487620	NUP155	O75694	1391 aa		13.15	□□□□□ -0.3
ZNF3-215	ENST00000487620	GRIN2A	Q12879	1464 aa		13.15	□□□□□ -0.3
ZNF3-215	ENST00000487620	ST20-MTHFS	A0A0A6YYL1	179 aa		13.15	□□□□□ -0.31
ZNF3-215	ENST00000487620	KIF15	Q9NS87	1388 aa		13.14	□□□□□ -0.31
ZNF3-215	ENST00000487620	RALGAPB	Q86X10	1494 aa		13.14	□□□□□ -0.31
ZNF3-215	ENST00000487620	IFT140	Q96RY7	1462 aa		13.14	□□□□□ -0.31
ZNF3-215	ENST00000487620	SALL2	Q9Y467	1007 aa	Predicted RBP	13.13	□□□□□ -0.31
ZNF3-215	ENST00000487620	DCAF11	Q8TEB1	546 aa		13.13	□□□□□ -0.31
ZNF3-215	ENST00000487620	UHRF1BP1	Q6BDS2	1440 aa		13.12	□□□□□ -0.31
ZNF3-215	ENST00000487620	ADCY10	Q96PN6	1610 aa		13.12	□□□□□ -0.31
ZNF3-215	ENST00000487620	IPO9	Q96P70	1041 aa	Known RBP	13.12	□□□□□ -0.31
ZNF3-215	ENST00000487620	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.11	□□□□□ -0.31
ZNF3-215	ENST00000487620	FBLN2	P98095	1184 aa		13.11	□□□□□ -0.31
ZNF3-215	ENST00000487620	EIF4G3	O43432	1585 aa	Known RBP	13.1	□□□□□ -0.31
ZNF3-215	ENST00000487620	BRD4	O60885	1362 aa	Predicted RBP	13.1	□□□□□ -0.31
ZNF3-215	ENST00000487620	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.1	□□□□□ -0.31
ZNF3-215	ENST00000487620	LRPPRC	P42704	1394 aa	Known RBP	13.1	□□□□□ -0.31
ZNF3-215	ENST00000487620	CDC42BPA	Q5VT25	1732 aa		13.09	□□□□□ -0.31
ZNF3-215	ENST00000487620	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.09	□□□□□ -0.31
ZNF3-215	ENST00000487620	C9orf84	Q5VXU9	1444 aa		13.09	□□□□□ -0.31
ZNF3-215	ENST00000487620	ARHGEF12	Q9NZN5	1544 aa		13.09	□□□□□ -0.31
ZNF3-215	ENST00000487620	RALBP1	Q15311	655 aa		13.09	□□□□□ -0.31
ZNF3-215	ENST00000487620	TSPY4	P0CV99	314 aa		13.08	□□□□□ -0.31
ZNF3-215	ENST00000487620	TSPY10	P0CW01	314 aa		13.08	□□□□□ -0.31
ZNF3-215	ENST00000487620	RRP1	P56182	461 aa	Known RBP	13.08	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms