RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 CEBPAP49715 358 aaPredicted RBP20.66■□□□□ 0.9
TRIM56-204ENST00000487252 HECW1Q76N89 1606 aa20.65■□□□□ 0.9
TRIM56-204ENST00000487252 RAPGEF6Q8TEU7 1601 aa20.6■□□□□ 0.89
TRIM56-204ENST00000487252 ATP10AO60312 1499 aa20.6■□□□□ 0.89
TRIM56-204ENST00000487252 MED1Q15648 1581 aaPredicted RBP20.59■□□□□ 0.89
TRIM56-204ENST00000487252 NCOA1Q15788 1441 aa20.57■□□□□ 0.88
TRIM56-204ENST00000487252 C9orf84Q5VXU9 1444 aa20.57■□□□□ 0.88
TRIM56-204ENST00000487252 FAM9AQ8IZU1 332 aaPredicted RBP20.57■□□□□ 0.88
TRIM56-204ENST00000487252 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.57■□□□□ 0.881e-7■■■□□ 15.5
TRIM56-204ENST00000487252 NUP153P49790 1475 aaKnown RBP20.56■□□□□ 0.88
TRIM56-204ENST00000487252 UBAP1LF5GYI3 381 aa20.53■□□□□ 0.88
TRIM56-204ENST00000487252 C3P01024 1663 aa20.51■□□□□ 0.87
TRIM56-204ENST00000487252 SAMD9Q5K651 1589 aa20.51■□□□□ 0.87
TRIM56-204ENST00000487252 PRXQ9BXM0 1461 aa20.5■□□□□ 0.87
TRIM56-204ENST00000487252 P3H3Q8IVL6 736 aa20.5■□□□□ 0.87
TRIM56-204ENST00000487252 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.49■□□□□ 0.87
TRIM56-204ENST00000487252 HNRNPUL2Q1KMD3 747 aaKnown RBP20.49■□□□□ 0.87
TRIM56-204ENST00000487252 SCAPERQ9BY12 1400 aa20.49■□□□□ 0.87
TRIM56-204ENST00000487252 TRAPPC8Q9Y2L5 1435 aa20.47■□□□□ 0.87
TRIM56-204ENST00000487252 PLEKHD1A6NEE1 506 aa20.45■□□□□ 0.86
TRIM56-204ENST00000487252 ZNF335Q9H4Z2 1342 aaPredicted RBP20.45■□□□□ 0.86
TRIM56-204ENST00000487252 REREQ9P2R6 1566 aa20.43■□□□□ 0.86
TRIM56-204ENST00000487252 HSPA1LP34931 641 aa20.42■□□□□ 0.86
TRIM56-204ENST00000487252 PLCH2O75038 1416 aa20.42■□□□□ 0.86
TRIM56-204ENST00000487252 CAMSAP1Q5T5Y3 1602 aa20.42■□□□□ 0.86
TRIM56-204ENST00000487252 KDM5CP41229 1560 aa20.38■□□□□ 0.85
TRIM56-204ENST00000487252 AGLP35573 1532 aa20.37■□□□□ 0.85
TRIM56-204ENST00000487252 DIP2CQ9Y2E4 1556 aa20.36■□□□□ 0.85
TRIM56-204ENST00000487252 ZNF518AQ6AHZ1 1483 aa20.35■□□□□ 0.85
TRIM56-204ENST00000487252 NPATQ14207 1427 aa20.33■□□□□ 0.84
TRIM56-204ENST00000487252 NCKAP5LQ9HCH0 1330 aa20.32■□□□□ 0.84
TRIM56-204ENST00000487252 PLA2R1Q13018 1463 aa20.32■□□□□ 0.84
TRIM56-204ENST00000487252 TCOF1Q13428 1488 aaKnown RBP20.31■□□□□ 0.84
TRIM56-204ENST00000487252 CNTLNQ9NXG0 1405 aa20.3■□□□□ 0.84
TRIM56-204ENST00000487252 PKD2Q13563 968 aa20.29■□□□□ 0.84
TRIM56-204ENST00000487252 PHF23Q9BUL5 403 aaPredicted RBP20.29■□□□□ 0.84
TRIM56-204ENST00000487252 ABCA6Q8N139 1617 aa20.28■□□□□ 0.84
TRIM56-204ENST00000487252 ZNF142P52746 1687 aaPredicted RBP20.27■□□□□ 0.84
TRIM56-204ENST00000487252 EFCAB2Q5VUJ9 269 aa20.27■□□□□ 0.84
TRIM56-204ENST00000487252 MYO5CQ9NQX4 1742 aa20.27■□□□□ 0.83
TRIM56-204ENST00000487252 MROH2AA6NES4 1674 aa20.26■□□□□ 0.83
TRIM56-204ENST00000487252 AFAP1Q8N556 730 aa20.26■□□□□ 0.83
TRIM56-204ENST00000487252 MLH3Q9UHC1 1453 aa20.25■□□□□ 0.83
TRIM56-204ENST00000487252 TOM1O60784 492 aa20.25■□□□□ 0.83
TRIM56-204ENST00000487252 PIP4K2BP78356 416 aa20.23■□□□□ 0.83
TRIM56-204ENST00000487252 ESF1Q9H501 851 aaKnown RBP20.23■□□□□ 0.83
TRIM56-204ENST00000487252 ALKQ9UM73 1620 aa20.22■□□□□ 0.83
TRIM56-204ENST00000487252 SCAF1Q9H7N4 1312 aaKnown RBP20.21■□□□□ 0.83
TRIM56-204ENST00000487252 CPS1P31327 1500 aa20.2■□□□□ 0.82
TRIM56-204ENST00000487252 CDK13Q14004 1512 aaKnown RBP20.2■□□□□ 0.82
TRIM56-204ENST00000487252 MYO3AQ8NEV4 1616 aa20.2■□□□□ 0.82
TRIM56-204ENST00000487252 RGS17Q9UGC6 210 aaPredicted RBP20.19■□□□□ 0.82
TRIM56-204ENST00000487252 CEP170BQ9Y4F5 1589 aaPredicted RBP20.18■□□□□ 0.82
TRIM56-204ENST00000487252 PPP6R1Q9UPN7 881 aa20.18■□□□□ 0.82
TRIM56-204ENST00000487252 ZMYM3Q14202 1370 aa20.18■□□□□ 0.82
TRIM56-204ENST00000487252 SUPT6HQ7KZ85 1726 aaKnown RBP20.17■□□□□ 0.82
TRIM56-204ENST00000487252 PTPRKQ15262 1439 aa20.13■□□□□ 0.81
TRIM56-204ENST00000487252 SHANK2Q9UPX8 1470 aa20.12■□□□□ 0.81
TRIM56-204ENST00000487252 KIDINS220Q9ULH0 1771 aa20.12■□□□□ 0.81
TRIM56-204ENST00000487252 ARHGAP5Q13017 1502 aa20.12■□□□□ 0.81
TRIM56-204ENST00000487252 KIF14Q15058 1648 aa20.11■□□□□ 0.81
TRIM56-204ENST00000487252 MYT1LQ9UL68 1186 aa20.1■□□□□ 0.81
TRIM56-204ENST00000487252 NEURL4Q96JN8 1562 aa20.08■□□□□ 0.81
TRIM56-204ENST00000487252 CDC42BPBQ9Y5S2 1711 aa20.07■□□□□ 0.8
TRIM56-204ENST00000487252 ABCC1P33527 1531 aa20.06■□□□□ 0.8
TRIM56-204ENST00000487252 DNMT1P26358 1616 aaKnown RBP20.05■□□□□ 0.8
TRIM56-204ENST00000487252 POLR1AO95602 1720 aaPredicted RBP20.05■□□□□ 0.8
TRIM56-204ENST00000487252 VWDEQ8N2E2 1590 aa20.05■□□□□ 0.8
TRIM56-204ENST00000487252 CLTCQ00610 1675 aaKnown RBP20.04■□□□□ 0.8
TRIM56-204ENST00000487252 ITSN2Q9NZM3 1697 aa20.04■□□□□ 0.8
TRIM56-204ENST00000487252 A2ML1A8K2U0 1454 aa20.03■□□□□ 0.8
TRIM56-204ENST00000487252 TROQ12816 1431 aaPredicted RBP20.01■□□□□ 0.79
TRIM56-204ENST00000487252 RANGAP1P46060 587 aaPredicted RBP19.99■□□□□ 0.79
TRIM56-204ENST00000487252 POTEAQ6S8J7 498 aa19.98■□□□□ 0.79
TRIM56-204ENST00000487252 CSRNP3Q8WYN3 585 aa19.98■□□□□ 0.79
TRIM56-204ENST00000487252 PREX2Q70Z35 1606 aa19.98■□□□□ 0.79
TRIM56-204ENST00000487252 CDK11AQ9UQ88 783 aaPredicted RBP19.97■□□□□ 0.79
TRIM56-204ENST00000487252 PLXNC1O60486 1568 aa19.96■□□□□ 0.79
TRIM56-204ENST00000487252 SAMD9LQ8IVG5 1584 aa19.95■□□□□ 0.78
TRIM56-204ENST00000487252 RNF17Q9BXT8 1623 aaKnown RBP19.94■□□□□ 0.78
TRIM56-204ENST00000487252 MED14O60244 1454 aa19.92■□□□□ 0.78
TRIM56-204ENST00000487252 LRRC7Q96NW7 1537 aa19.92■□□□□ 0.78
TRIM56-204ENST00000487252 STRCP1A6NGW2 1772 aa19.91■□□□□ 0.78
TRIM56-204ENST00000487252 CLIP1P30622 1438 aa19.91■□□□□ 0.78
TRIM56-204ENST00000487252 SETD1AO15047 1707 aaKnown RBP19.89■□□□□ 0.77
TRIM56-204ENST00000487252 DEPDC5O75140 1603 aa19.89■□□□□ 0.77
TRIM56-204ENST00000487252 SYNMO15061 1565 aa19.87■□□□□ 0.77
TRIM56-204ENST00000487252 SENP3Q9H4L4 574 aaPredicted RBP19.87■□□□□ 0.77
TRIM56-204ENST00000487252 FMN1Q68DA7 1419 aa19.86■□□□□ 0.77
TRIM56-204ENST00000487252 SRCAPQ6ZRS2 3230 aa19.85■□□□□ 0.77
TRIM56-204ENST00000487252 LRRIQ1Q96JM4 1722 aa19.85■□□□□ 0.77
TRIM56-204ENST00000487252 ANKLE2Q86XL3 938 aa19.85■□□□□ 0.77
TRIM56-204ENST00000487252 A2MP01023 1474 aa19.85■□□□□ 0.77
TRIM56-204ENST00000487252 NPHP4O75161 1426 aaPredicted RBP19.85■□□□□ 0.77
TRIM56-204ENST00000487252 CDC42BPAQ5VT25 1732 aa19.84■□□□□ 0.77
TRIM56-204ENST00000487252 INO80Q9ULG1 1556 aaPredicted RBP19.83■□□□□ 0.77
TRIM56-204ENST00000487252 ATP7AQ04656 1500 aa19.83■□□□□ 0.77
TRIM56-204ENST00000487252 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.82■□□□□ 0.76
TRIM56-204ENST00000487252 IQGAP1P46940 1657 aa19.81■□□□□ 0.76
TRIM56-204ENST00000487252 SPAG9O60271 1321 aaKnown RBP19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms