RNA–Protein interactions for RNA: ENST00000486901.1

HSPG2-211, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 3,586 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-211ENST00000486901 PLIN1O60240 522 aa16.71■□□□□ 0.26
HSPG2-211ENST00000486901 CFAP43Q8NDM7 1665 aa16.7■□□□□ 0.26
HSPG2-211ENST00000486901 NUDCQ9Y266 331 aa16.69■□□□□ 0.26
HSPG2-211ENST00000486901 PRDM2Q13029 1718 aa16.69■□□□□ 0.26
HSPG2-211ENST00000486901 DENND4BO75064 1496 aaPredicted RBP16.69■□□□□ 0.26
HSPG2-211ENST00000486901 POLA1P09884 1462 aaPredicted RBP16.68■□□□□ 0.26
HSPG2-211ENST00000486901 IPO9Q96P70 1041 aaKnown RBP16.68■□□□□ 0.26
HSPG2-211ENST00000486901 SLC4A3P48751 1232 aa16.67■□□□□ 0.26
HSPG2-211ENST00000486901 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.67■□□□□ 0.26
HSPG2-211ENST00000486901 ERICH6BQ5W0A0 696 aa16.64■□□□□ 0.26
HSPG2-211ENST00000486901 NCOA1Q15788 1441 aa16.64■□□□□ 0.26
HSPG2-211ENST00000486901 SNAPC4Q5SXM2 1469 aa16.64■□□□□ 0.26
HSPG2-211ENST00000486901 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.63■□□□□ 0.25
HSPG2-211ENST00000486901 CDCA7LQ96GN5 454 aa16.63■□□□□ 0.25
HSPG2-211ENST00000486901 NEFMP07197 916 aa16.63■□□□□ 0.25
HSPG2-211ENST00000486901 PKD2Q13563 968 aa16.63■□□□□ 0.25
HSPG2-211ENST00000486901 MAGI3Q5TCQ9 1506 aa16.62■□□□□ 0.25
HSPG2-211ENST00000486901 CDK13Q14004 1512 aaKnown RBP16.62■□□□□ 0.25
HSPG2-211ENST00000486901 CARD11Q9BXL7 1154 aa16.62■□□□□ 0.25
HSPG2-211ENST00000486901 RGL3Q3MIN7 710 aa16.6■□□□□ 0.25
HSPG2-211ENST00000486901 CC2D2AQ9P2K1 1620 aa16.6■□□□□ 0.25
HSPG2-211ENST00000486901 ST20-MTHFSA0A0A6YYL1 179 aa16.59■□□□□ 0.25
HSPG2-211ENST00000486901 TOPBP1Q92547 1522 aa16.58■□□□□ 0.25
HSPG2-211ENST00000486901 CC2D1BQ5T0F9 858 aaKnown RBP16.58■□□□□ 0.25
HSPG2-211ENST00000486901 PNISRQ8TF01 805 aaKnown RBP16.58■□□□□ 0.25
HSPG2-211ENST00000486901 USP47Q96K76 1375 aa16.58■□□□□ 0.24
HSPG2-211ENST00000486901 MYT1LQ9UL68 1186 aa16.58■□□□□ 0.24
HSPG2-211ENST00000486901 ANKRD30BQ9BXX2 1392 aa16.57■□□□□ 0.24
HSPG2-211ENST00000486901 DCAF11Q8TEB1 546 aa16.56■□□□□ 0.24
HSPG2-211ENST00000486901 PDE4AP27815 886 aa16.54■□□□□ 0.24
HSPG2-211ENST00000486901 CFDP1Q9UEE9 299 aaPredicted RBP16.54■□□□□ 0.24
HSPG2-211ENST00000486901 RCAN3Q9UKA8 241 aa16.53■□□□□ 0.24
HSPG2-211ENST00000486901 EFCAB5A4FU69 1503 aa16.53■□□□□ 0.24
HSPG2-211ENST00000486901 SMG6Q86US8 1419 aaKnown RBP16.53■□□□□ 0.24
HSPG2-211ENST00000486901 ABCA10Q8WWZ4 1543 aa16.53■□□□□ 0.24
HSPG2-211ENST00000486901 RRP1P56182 461 aaKnown RBP16.52■□□□□ 0.24
HSPG2-211ENST00000486901 DHX29Q7Z478 1369 aaKnown RBP16.52■□□□□ 0.24
HSPG2-211ENST00000486901 GRIN2BQ13224 1484 aa16.52■□□□□ 0.24
HSPG2-211ENST00000486901 LRRIQ1Q96JM4 1722 aa16.52■□□□□ 0.23
HSPG2-211ENST00000486901 PDS5BQ9NTI5 1447 aa16.51■□□□□ 0.23
HSPG2-211ENST00000486901 SENP3Q9H4L4 574 aaPredicted RBP16.51■□□□□ 0.23
HSPG2-211ENST00000486901 GAPVD1Q14C86 1478 aa16.5■□□□□ 0.23
HSPG2-211ENST00000486901 SUPT6HQ7KZ85 1726 aaKnown RBP16.49■□□□□ 0.23
HSPG2-211ENST00000486901 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.49■□□□□ 0.23
HSPG2-211ENST00000486901 DNMBPQ6XZF7 1577 aa16.49■□□□□ 0.23
HSPG2-211ENST00000486901 PRKCSHP14314 528 aaPredicted RBP16.48■□□□□ 0.23
HSPG2-211ENST00000486901 C20orf194Q5TEA3 1177 aa16.48■□□□□ 0.23
HSPG2-211ENST00000486901 UGGT2Q9NYU1 1516 aa16.47■□□□□ 0.23
HSPG2-211ENST00000486901 BRPF3Q9ULD4 1205 aa16.47■□□□□ 0.23
HSPG2-211ENST00000486901 CRBNQ96SW2 442 aa16.47■□□□□ 0.23
HSPG2-211ENST00000486901 SPATA31E1Q6ZUB1 1445 aa16.46■□□□□ 0.23
HSPG2-211ENST00000486901 RPRD2Q5VT52 1461 aaKnown RBP16.46■□□□□ 0.23
HSPG2-211ENST00000486901 EHBP1L1Q8N3D4 1523 aa16.45■□□□□ 0.22
HSPG2-211ENST00000486901 THOC2Q8NI27 1593 aaKnown RBP16.45■□□□□ 0.22
HSPG2-211ENST00000486901 RGS3P49796 1198 aa16.44■□□□□ 0.22
HSPG2-211ENST00000486901 ABCC5O15440 1437 aa16.44■□□□□ 0.22
HSPG2-211ENST00000486901 EPRSP07814 1512 aaKnown RBP16.44■□□□□ 0.22
HSPG2-211ENST00000486901 TEX14Q8IWB6 1497 aa16.44■□□□□ 0.22
HSPG2-211ENST00000486901 NBPF1Q3BBV0 1214 aa16.44■□□□□ 0.22
HSPG2-211ENST00000486901 URB2Q14146 1524 aaKnown RBP16.44■□□□□ 0.22
HSPG2-211ENST00000486901 ARXQ96QS3 562 aa16.43■□□□□ 0.22
HSPG2-211ENST00000486901 DAPK1P53355 1430 aa16.43■□□□□ 0.22
HSPG2-211ENST00000486901 NUP155O75694 1391 aa16.42■□□□□ 0.22
HSPG2-211ENST00000486901 CTTNBP2Q8WZ74 1663 aa16.42■□□□□ 0.22
HSPG2-211ENST00000486901 EIF5BO60841 1220 aaKnown RBP16.41■□□□□ 0.22
HSPG2-211ENST00000486901 BACH2Q9BYV9 841 aa16.41■□□□□ 0.22
HSPG2-211ENST00000486901 PRG4Q92954 1404 aaPredicted RBP16.4■□□□□ 0.22
HSPG2-211ENST00000486901 DAXXQ9UER7 740 aaPredicted RBP16.4■□□□□ 0.22
HSPG2-211ENST00000486901 RNF123Q5XPI4 1314 aa16.4■□□□□ 0.22
HSPG2-211ENST00000486901 HNRNPMP52272 730 aaKnown RBP eCLIP16.39■□□□□ 0.21
HSPG2-211ENST00000486901 MYBBP1AQ9BQG0 1328 aaKnown RBP16.38■□□□□ 0.21
HSPG2-211ENST00000486901 TCERG1O14776 1098 aaKnown RBP16.37■□□□□ 0.21
HSPG2-211ENST00000486901 BCORL1Q5H9F3 1711 aa16.37■□□□□ 0.21
HSPG2-211ENST00000486901 CUL7Q14999 1698 aa16.37■□□□□ 0.21
HSPG2-211ENST00000486901 CHMP7Q8WUX9 453 aaPredicted RBP16.36■□□□□ 0.21
HSPG2-211ENST00000486901 HECW1Q76N89 1606 aa16.35■□□□□ 0.21
HSPG2-211ENST00000486901 ROCK2O75116 1388 aaKnown RBP16.35■□□□□ 0.21
HSPG2-211ENST00000486901 KIF15Q9NS87 1388 aa16.34■□□□□ 0.21
HSPG2-211ENST00000486901 CCDC146Q8IYE0 955 aa16.33■□□□□ 0.21
HSPG2-211ENST00000486901 PANK3Q9H999 370 aa16.33■□□□□ 0.21
HSPG2-211ENST00000486901 TCOF1Q13428 1488 aaKnown RBP16.33■□□□□ 0.2
HSPG2-211ENST00000486901 SAMD9Q5K651 1589 aa16.32■□□□□ 0.2
HSPG2-211ENST00000486901 NLRP13Q86W25 1043 aa16.32■□□□□ 0.2
HSPG2-211ENST00000486901 PZPP20742 1482 aa16.31■□□□□ 0.2
HSPG2-211ENST00000486901 NFKBIBQ15653 356 aa16.31■□□□□ 0.2
HSPG2-211ENST00000486901 FRAT1Q92837 279 aaPredicted RBP16.3■□□□□ 0.2
HSPG2-211ENST00000486901 ADAMTS8Q9UP79 889 aa16.3■□□□□ 0.2
HSPG2-211ENST00000486901 MIA2Q96PC5 1412 aa16.3■□□□□ 0.2
HSPG2-211ENST00000486901 TSPY4P0CV99 314 aa16.3■□□□□ 0.2
HSPG2-211ENST00000486901 TSPY10P0CW01 314 aa16.3■□□□□ 0.2
HSPG2-211ENST00000486901 RALBP1Q15311 655 aa16.29■□□□□ 0.2
HSPG2-211ENST00000486901 KIAA1107Q9UPP5 1409 aa16.29■□□□□ 0.2
HSPG2-211ENST00000486901 ARHGEF11O15085 1522 aa16.29■□□□□ 0.2
HSPG2-211ENST00000486901 KTN1Q86UP2 1357 aaKnown RBP16.28■□□□□ 0.2
HSPG2-211ENST00000486901 LAMC3Q9Y6N6 1575 aa16.28■□□□□ 0.2
HSPG2-211ENST00000486901 GCC2Q8IWJ2 1684 aa16.28■□□□□ 0.2
HSPG2-211ENST00000486901 FRAT2O75474 233 aaPredicted RBP16.28■□□□□ 0.2
HSPG2-211ENST00000486901 ANKRD50Q9ULJ7 1429 aa16.26■□□□□ 0.19
HSPG2-211ENST00000486901 BRD4O60885 1362 aaPredicted RBP16.25■□□□□ 0.19
HSPG2-211ENST00000486901 PPM1GO15355 546 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms