RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 PCF11O94913 1555 aaKnown RBP17.73■□□□□ 0.43
HMGN1-216ENST00000486741 UACAQ9BZF9 1416 aa17.73■□□□□ 0.43
HMGN1-216ENST00000486741 KNSTRNQ9Y448 316 aa17.72■□□□□ 0.43
HMGN1-216ENST00000486741 TNNT2P45379 298 aaPredicted RBP17.71■□□□□ 0.43
HMGN1-216ENST00000486741 SNAPC4Q5SXM2 1469 aa17.71■□□□□ 0.43
HMGN1-216ENST00000486741 PRG4Q92954 1404 aaPredicted RBP17.71■□□□□ 0.43
HMGN1-216ENST00000486741 KIF3BO15066 747 aa17.71■□□□□ 0.43
HMGN1-216ENST00000486741 EFCAB5A4FU69 1503 aa17.7■□□□□ 0.42
HMGN1-216ENST00000486741 CDK13Q14004 1512 aaKnown RBP17.7■□□□□ 0.42
HMGN1-216ENST00000486741 ST20-MTHFSA0A0A6YYL1 179 aa17.7■□□□□ 0.42
HMGN1-216ENST00000486741 LAMC3Q9Y6N6 1575 aa17.69■□□□□ 0.42
HMGN1-216ENST00000486741 ZNF608Q9ULD9 1512 aaPredicted RBP17.69■□□□□ 0.42
HMGN1-216ENST00000486741 B4GALNT3Q6L9W6 998 aa17.69■□□□□ 0.42
HMGN1-216ENST00000486741 ROCK2O75116 1388 aaKnown RBP17.68■□□□□ 0.42
HMGN1-216ENST00000486741 SAFB2Q14151 953 aaKnown RBP eCLIP17.66■□□□□ 0.42
HMGN1-216ENST00000486741 IFT140Q96RY7 1462 aa17.66■□□□□ 0.42
HMGN1-216ENST00000486741 SPAG9O60271 1321 aaKnown RBP17.65■□□□□ 0.42
HMGN1-216ENST00000486741 NEUROD2Q15784 382 aa17.65■□□□□ 0.42
HMGN1-216ENST00000486741 MLECQ14165 292 aa17.64■□□□□ 0.41
HMGN1-216ENST00000486741 SLC24A1O60721 1099 aa17.64■□□□□ 0.41
HMGN1-216ENST00000486741 TMF1P82094 1093 aa17.64■□□□□ 0.41
HMGN1-216ENST00000486741 NUTM2DQ5VT03 806 aaPredicted RBP17.62■□□□□ 0.41
HMGN1-216ENST00000486741 NBPF8Q3BBV2 869 aa17.61■□□□□ 0.41
HMGN1-216ENST00000486741 HFM1A2PYH4 1435 aa17.61■□□□□ 0.41
HMGN1-216ENST00000486741 NEFMP07197 916 aa17.61■□□□□ 0.41
HMGN1-216ENST00000486741 PRKRIP1Q9H875 184 aaPredicted RBP17.61■□□□□ 0.41
HMGN1-216ENST00000486741 WDR97A6NE52 1622 aa17.6■□□□□ 0.41
HMGN1-216ENST00000486741 WASHC2AQ641Q2 1341 aa17.6■□□□□ 0.41
HMGN1-216ENST00000486741 NAIPQ13075 1403 aa17.6■□□□□ 0.41
HMGN1-216ENST00000486741 EPRSP07814 1512 aaKnown RBP17.6■□□□□ 0.41
HMGN1-216ENST00000486741 RSPH4AQ5TD94 716 aa17.6■□□□□ 0.41
HMGN1-216ENST00000486741 RTL5Q5HYW3 569 aaPredicted RBP17.59■□□□□ 0.41
HMGN1-216ENST00000486741 KIF15Q9NS87 1388 aa17.59■□□□□ 0.41
HMGN1-216ENST00000486741 ANP32AP39687 249 aaKnown RBP17.58■□□□□ 0.4
HMGN1-216ENST00000486741 ANKRD50Q9ULJ7 1429 aa17.57■□□□□ 0.4
HMGN1-216ENST00000486741 CDCA8Q53HL2 280 aa17.57■□□□□ 0.4
HMGN1-216ENST00000486741 AFAP1Q8N556 730 aa17.57■□□□□ 0.4
HMGN1-216ENST00000486741 KANK1Q14678 1352 aa17.57■□□□□ 0.4
HMGN1-216ENST00000486741 USP47Q96K76 1375 aa17.56■□□□□ 0.4
HMGN1-216ENST00000486741 PLB1Q6P1J6 1458 aa17.56■□□□□ 0.4
HMGN1-216ENST00000486741 ARID4BQ4LE39 1312 aaPredicted RBP17.56■□□□□ 0.4
HMGN1-216ENST00000486741 EHBP1L1Q8N3D4 1523 aa17.55■□□□□ 0.4
HMGN1-216ENST00000486741 STK26Q9P289 416 aa17.55■□□□□ 0.4
HMGN1-216ENST00000486741 PPM1GO15355 546 aaPredicted RBP17.55■□□□□ 0.4
HMGN1-216ENST00000486741 KIAA0586Q9BVV6 1533 aa17.55■□□□□ 0.4
HMGN1-216ENST00000486741 KIF7Q2M1P5 1343 aa17.54■□□□□ 0.4
HMGN1-216ENST00000486741 IQGAP2Q13576 1575 aa17.54■□□□□ 0.4
HMGN1-216ENST00000486741 CCDC144AA2RUR9 1427 aa17.53■□□□□ 0.4
HMGN1-216ENST00000486741 PLEKHG5O94827 1062 aa17.53■□□□□ 0.4
HMGN1-216ENST00000486741 PPP4R2Q9NY27 417 aa17.53■□□□□ 0.4
HMGN1-216ENST00000486741 CUL7Q14999 1698 aa17.53■□□□□ 0.4
HMGN1-216ENST00000486741 PTPRKQ15262 1439 aa17.53■□□□□ 0.4
HMGN1-216ENST00000486741 TROQ12816 1431 aaPredicted RBP17.52■□□□□ 0.4
HMGN1-216ENST00000486741 POGKQ9P215 609 aa17.5■□□□□ 0.39
HMGN1-216ENST00000486741 CYB5RLQ6IPT4 315 aa17.49■□□□□ 0.39
HMGN1-216ENST00000486741 MIA2Q96PC5 1412 aa17.49■□□□□ 0.39
HMGN1-216ENST00000486741 CCDC7Q96M83 1385 aa17.49■□□□□ 0.39
HMGN1-216ENST00000486741 MAP3K1Q13233 1512 aa17.49■□□□□ 0.39
HMGN1-216ENST00000486741 DAPK1P53355 1430 aa17.48■□□□□ 0.39
HMGN1-216ENST00000486741 CCDC184Q52MB2 194 aa17.48■□□□□ 0.39
HMGN1-216ENST00000486741 KTN1Q86UP2 1357 aaKnown RBP17.48■□□□□ 0.39
HMGN1-216ENST00000486741 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.48■□□□□ 0.39
HMGN1-216ENST00000486741 PANK3Q9H999 370 aa17.47■□□□□ 0.39
HMGN1-216ENST00000486741 HECW1Q76N89 1606 aa17.47■□□□□ 0.39
HMGN1-216ENST00000486741 SUPT6HQ7KZ85 1726 aaKnown RBP17.47■□□□□ 0.39
HMGN1-216ENST00000486741 GRIN2AQ12879 1464 aa17.47■□□□□ 0.39
HMGN1-216ENST00000486741 NBPF1Q3BBV0 1214 aa17.46■□□□□ 0.39
HMGN1-216ENST00000486741 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.46■□□□□ 0.39
HMGN1-216ENST00000486741 NBR1Q14596 966 aa17.45■□□□□ 0.38
HMGN1-216ENST00000486741 TSHZ2Q9NRE2 1034 aa17.45■□□□□ 0.38
HMGN1-216ENST00000486741 WASHC2CQ9Y4E1 1318 aa17.45■□□□□ 0.38
HMGN1-216ENST00000486741 C11orf95C9JLR9 678 aaPredicted RBP17.45■□□□□ 0.38
HMGN1-216ENST00000486741 TRAK1Q9UPV9 953 aa17.45■□□□□ 0.38
HMGN1-216ENST00000486741 OSCARQ8IYS5 282 aa17.44■□□□□ 0.38
HMGN1-216ENST00000486741 SRPK2P78362 688 aaKnown RBP17.44■□□□□ 0.38
HMGN1-216ENST00000486741 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
HMGN1-216ENST00000486741 RALBP1Q15311 655 aa17.43■□□□□ 0.38
HMGN1-216ENST00000486741 ABCC5O15440 1437 aa17.42■□□□□ 0.38
HMGN1-216ENST00000486741 C9orf84Q5VXU9 1444 aa17.42■□□□□ 0.38
HMGN1-216ENST00000486741 RBM19Q9Y4C8 960 aaKnown RBP17.41■□□□□ 0.38
HMGN1-216ENST00000486741 ARHGEF11O15085 1522 aa17.41■□□□□ 0.38
HMGN1-216ENST00000486741 U2SURPO15042 1029 aaKnown RBP17.41■□□□□ 0.38
HMGN1-216ENST00000486741 PTPN23Q9H3S7 1636 aa17.41■□□□□ 0.38
HMGN1-216ENST00000486741 MORC1Q86VD1 984 aa17.4■□□□□ 0.38
HMGN1-216ENST00000486741 NLRP13Q86W25 1043 aa17.4■□□□□ 0.38
HMGN1-216ENST00000486741 FRAT1Q92837 279 aaPredicted RBP17.4■□□□□ 0.38
HMGN1-216ENST00000486741 THOC2Q8NI27 1593 aaKnown RBP17.4■□□□□ 0.38
HMGN1-216ENST00000486741 CCDC146Q8IYE0 955 aa17.39■□□□□ 0.37
HMGN1-216ENST00000486741 CFAP53Q96M91 514 aa17.39■□□□□ 0.37
HMGN1-216ENST00000486741 MAPKBP1O60336 1514 aa17.39■□□□□ 0.37
HMGN1-216ENST00000486741 ARHGAP5Q13017 1502 aa17.39■□□□□ 0.37
HMGN1-216ENST00000486741 ZBTB47Q9UFB7 747 aaPredicted RBP17.38■□□□□ 0.37
HMGN1-216ENST00000486741 NUDCQ9Y266 331 aa17.36■□□□□ 0.37
HMGN1-216ENST00000486741 RCAN3Q9UKA8 241 aa17.35■□□□□ 0.37
HMGN1-216ENST00000486741 KIAA1107Q9UPP5 1409 aa17.35■□□□□ 0.37
HMGN1-216ENST00000486741 CNTLNQ9NXG0 1405 aa17.35■□□□□ 0.37
HMGN1-216ENST00000486741 SOX12O15370 315 aa17.35■□□□□ 0.37
HMGN1-216ENST00000486741 LAS1LQ9Y4W2 734 aaKnown RBP17.35■□□□□ 0.37
HMGN1-216ENST00000486741 RGS3P49796 1198 aa17.34■□□□□ 0.37
HMGN1-216ENST00000486741 ANKRD30BQ9BXX2 1392 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms