RNA–Protein interactions for RNA: ENST00000485749.1

RTN4-213, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 832 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-213ENST00000485749 PHF8Q9UPP1 1060 aa8.77□□□□□ -1.01
RTN4-213ENST00000485749 STK24Q9Y6E0 443 aa8.76□□□□□ -1.01
RTN4-213ENST00000485749 ECM2O94769 699 aaPredicted RBP8.75□□□□□ -1.01
RTN4-213ENST00000485749 STK25O00506 426 aa8.74□□□□□ -1.01
RTN4-213ENST00000485749 MS4A4AQ96JQ5 239 aa8.73□□□□□ -1.01
RTN4-213ENST00000485749 KRTAP3-3Q9BYR6 98 aa8.71□□□□□ -1.02
RTN4-213ENST00000485749 KRTAP3-2Q9BYR7 98 aa8.71□□□□□ -1.02
RTN4-213ENST00000485749 POTEB3A0JP26 581 aa8.68□□□□□ -1.02
RTN4-213ENST00000485749 VARS2Q5ST30 1063 aaKnown RBP8.68□□□□□ -1.02
RTN4-213ENST00000485749 POTEBQ6S5H4 581 aa8.68□□□□□ -1.02
RTN4-213ENST00000485749 TMEM92Q6UXU6 159 aa8.68□□□□□ -1.02
RTN4-213ENST00000485749 FBXO22Q8NEZ5 403 aa8.68□□□□□ -1.02
RTN4-213ENST00000485749 BCANQ96GW7 911 aa8.67□□□□□ -1.02
RTN4-213ENST00000485749 PTGER2P43116 358 aa8.66□□□□□ -1.02
RTN4-213ENST00000485749 GPR153Q6NV75 609 aa8.66□□□□□ -1.02
RTN4-213ENST00000485749 ZNF687Q8N1G0 1237 aa8.66□□□□□ -1.02
RTN4-213ENST00000485749 MFRPQ9BY79 579 aa8.65□□□□□ -1.02
RTN4-213ENST00000485749 VSIG10Q8N0Z9 540 aa8.62□□□□□ -1.03
RTN4-213ENST00000485749 TMC2Q8TDI7 906 aa8.62□□□□□ -1.03
RTN4-213ENST00000485749 HAP1P54257 671 aaPredicted RBP8.61□□□□□ -1.03
RTN4-213ENST00000485749 ARSIQ5FYB1 569 aa8.6□□□□□ -1.03
RTN4-213ENST00000485749 RNF166Q96A37 237 aaPredicted RBP8.6□□□□□ -1.03
RTN4-213ENST00000485749 ZNF316A6NFI3 1004 aaPredicted RBP8.59□□□□□ -1.03
RTN4-213ENST00000485749 RGL2O15211 777 aa8.59□□□□□ -1.03
RTN4-213ENST00000485749 PKD2Q13563 968 aa8.59□□□□□ -1.03
RTN4-213ENST00000485749 C2orf72A6NCS6 295 aa8.57□□□□□ -1.04
RTN4-213ENST00000485749 KIF3CO14782 793 aa8.57□□□□□ -1.04
RTN4-213ENST00000485749 SLC34A2O95436 690 aa8.57□□□□□ -1.04
RTN4-213ENST00000485749 MYT1LQ9UL68 1186 aa8.57□□□□□ -1.04
RTN4-213ENST00000485749 PBX2P40425 430 aa8.56□□□□□ -1.04
RTN4-213ENST00000485749 PSDA5PKW4 1024 aaPredicted RBP8.55□□□□□ -1.04
RTN4-213ENST00000485749 RYDENQ9NUL5 291 aaKnown RBP8.54□□□□□ -1.04
RTN4-213ENST00000485749 NUDT7P0C024 238 aa8.51□□□□□ -1.05
RTN4-213ENST00000485749 ANKRD13DQ6ZTN6 518 aa8.51□□□□□ -1.05
RTN4-213ENST00000485749 PCDHGA4Q9Y5G9 962 aa8.51□□□□□ -1.05
RTN4-213ENST00000485749 LSM11P83369 360 aaKnown RBP eCLIP8.5□□□□□ -1.05
RTN4-213ENST00000485749 HS6ST3Q8IZP7 471 aa8.5□□□□□ -1.05
RTN4-213ENST00000485749 TBC1D12O60347 775 aa8.49□□□□□ -1.05
RTN4-213ENST00000485749 DCAF8L2P0C7V8 631 aa8.49□□□□□ -1.05
RTN4-213ENST00000485749 KHSRPQ92945 711 aaKnown RBP eCLIP8.49□□□□□ -1.051e-8■■□□□ 13.1
RTN4-213ENST00000485749 PRKCSHP14314 528 aaPredicted RBP8.46□□□□□ -1.06
RTN4-213ENST00000485749 LHX6Q9UPM6 363 aa8.46□□□□□ -1.06
RTN4-213ENST00000485749 FOXK1P85037 733 aa8.45□□□□□ -1.06
RTN4-213ENST00000485749 BBXQ8WY36 941 aaPredicted RBP8.45□□□□□ -1.06
RTN4-213ENST00000485749 KCNH8Q96L42 1107 aa8.45□□□□□ -1.06
RTN4-213ENST00000485749 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.45□□□□□ -1.06
RTN4-213ENST00000485749 PTCD2Q8WV60 388 aaKnown RBP8.44□□□□□ -1.06
RTN4-213ENST00000485749 GPHNQ9NQX3 736 aaPredicted RBP8.44□□□□□ -1.06
RTN4-213ENST00000485749 PPP1R37O75864 691 aa8.43□□□□□ -1.06
RTN4-213ENST00000485749 CHGAP10645 457 aaKnown RBP8.43□□□□□ -1.06
RTN4-213ENST00000485749 ARHGAP33O14559 1287 aa8.42□□□□□ -1.06
RTN4-213ENST00000485749 PLPP6Q8IY26 295 aa8.41□□□□□ -1.06
RTN4-213ENST00000485749 PPP4R3BQ5MIZ7 849 aa8.4□□□□□ -1.06
RTN4-213ENST00000485749 DNAJC5Q9H3Z4 198 aa8.4□□□□□ -1.06
RTN4-213ENST00000485749 TK2O00142 265 aa8.38□□□□□ -1.07
RTN4-213ENST00000485749 STAC3Q96MF2 364 aa8.38□□□□□ -1.07
RTN4-213ENST00000485749 HCSTQ9UBK5 93 aa8.37□□□□□ -1.07
RTN4-213ENST00000485749 DAXXQ9UER7 740 aaPredicted RBP8.37□□□□□ -1.07
RTN4-213ENST00000485749 ADGRD1Q6QNK2 874 aa8.36□□□□□ -1.07
RTN4-213ENST00000485749 KDM2AQ9Y2K7 1162 aa8.36□□□□□ -1.07
RTN4-213ENST00000485749 AXIN2Q9Y2T1 843 aa8.36□□□□□ -1.07
RTN4-213ENST00000485749 DSG2Q14126 1118 aa8.35□□□□□ -1.07
RTN4-213ENST00000485749 TPRNQ4KMQ1 711 aa8.35□□□□□ -1.07
RTN4-213ENST00000485749 PDE4AP27815 886 aa8.33□□□□□ -1.08
RTN4-213ENST00000485749 KDM4FA0A1W2PPD8 638 aa8.32□□□□□ -1.08
RTN4-213ENST00000485749 POTEEQ6S8J3 1075 aa8.32□□□□□ -1.08
RTN4-213ENST00000485749 PAXIP1Q6ZW49 1069 aaPredicted RBP8.32□□□□□ -1.08
RTN4-213ENST00000485749 PPP1R15BQ5SWA1 713 aa8.3□□□□□ -1.08
RTN4-213ENST00000485749 SPRYD3Q8NCJ5 442 aa8.29□□□□□ -1.08
RTN4-213ENST00000485749 OXER1Q8TDS5 423 aa8.29□□□□□ -1.08
RTN4-213ENST00000485749 CRISPLD2Q9H0B8 497 aa8.29□□□□□ -1.08
RTN4-213ENST00000485749 UPF1Q92900 1129 aaKnown RBP eCLIP8.27□□□□□ -1.093e-6■■□□□ 12.5
RTN4-213ENST00000485749 CFAP44Q96MT7 982 aa8.27□□□□□ -1.09
RTN4-213ENST00000485749 HRO43593 1189 aa8.26□□□□□ -1.09
RTN4-213ENST00000485749 PSEN2P49810 448 aa8.26□□□□□ -1.09
RTN4-213ENST00000485749 NKX1-1Q15270 411 aaPredicted RBP8.26□□□□□ -1.09
RTN4-213ENST00000485749 KCNK17Q96T54 332 aa8.26□□□□□ -1.09
RTN4-213ENST00000485749 PLA2G2EQ9NZK7 142 aa8.26□□□□□ -1.09
RTN4-213ENST00000485749 ZNF454Q8N9F8 522 aa8.25□□□□□ -1.09
RTN4-213ENST00000485749 PTPREP23469 700 aa8.24□□□□□ -1.09
RTN4-213ENST00000485749 DMRTA1Q5VZB9 504 aa8.24□□□□□ -1.09
RTN4-213ENST00000485749 SLC4A5Q9BY07 1137 aa8.24□□□□□ -1.09
RTN4-213ENST00000485749 BCL2L12Q9HB09 334 aa8.24□□□□□ -1.09
RTN4-213ENST00000485749 DDX27Q96GQ7 796 aaKnown RBP8.23□□□□□ -1.09
RTN4-213ENST00000485749 GOLGA8CPA6NN73 597 aa8.21□□□□□ -1.1
RTN4-213ENST00000485749 MAP3K9P80192 1104 aa8.21□□□□□ -1.1
RTN4-213ENST00000485749 KCTD12Q96CX2 325 aaKnown RBP8.21□□□□□ -1.1
RTN4-213ENST00000485749 JPH4Q96JJ6 628 aa8.21□□□□□ -1.1
RTN4-213ENST00000485749 FOSBP53539 338 aa8.2□□□□□ -1.1
RTN4-213ENST00000485749 LARP6Q9BRS8 491 aaKnown RBP8.2□□□□□ -1.1
RTN4-213ENST00000485749 VPS9D1Q9Y2B5 631 aa8.2□□□□□ -1.1
RTN4-213ENST00000485749 EVI5O60447 810 aa8.19□□□□□ -1.1
RTN4-213ENST00000485749 ZDHHC16Q969W1 377 aa8.19□□□□□ -1.1
RTN4-213ENST00000485749 NBPF3Q9H094 633 aa8.19□□□□□ -1.1
RTN4-213ENST00000485749 ANO8Q9HCE9 1232 aaPredicted RBP8.19□□□□□ -1.1
RTN4-213ENST00000485749 GTPBP6O43824 516 aaPredicted RBP8.18□□□□□ -1.1
RTN4-213ENST00000485749 TSHZ2Q9NRE2 1034 aa8.18□□□□□ -1.1
RTN4-213ENST00000485749 NCKAP5LQ9HCH0 1330 aa8.18□□□□□ -1.1
RTN4-213ENST00000485749 MRPL50Q8N5N7 158 aaKnown RBP8.17□□□□□ -1.1
RTN4-213ENST00000485749 MFSD10Q14728 455 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms