RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ARHGAP5Q13017 1502 aa25.14■■□□□ 1.62
UPF3A-208ENST00000484246 GPATCH8Q9UKJ3 1502 aaKnown RBP25.13■■□□□ 1.61
UPF3A-208ENST00000484246 DENND4BO75064 1496 aaPredicted RBP25.13■■□□□ 1.61
UPF3A-208ENST00000484246 LRRC9Q6ZRR7 1453 aa25.13■■□□□ 1.61
UPF3A-208ENST00000484246 FRMPD1Q5SYB0 1578 aa25.13■■□□□ 1.61
UPF3A-208ENST00000484246 ADGRL1O94910 1474 aa25.12■■□□□ 1.61
UPF3A-208ENST00000484246 POGZQ7Z3K3 1410 aa25.09■■□□□ 1.61
UPF3A-208ENST00000484246 ZMYM4Q5VZL5 1548 aa25.08■■□□□ 1.61
UPF3A-208ENST00000484246 CCNB3Q8WWL7 1395 aa25.07■■□□□ 1.6
UPF3A-208ENST00000484246 CDC42BPAQ5VT25 1732 aa25.07■■□□□ 1.6
UPF3A-208ENST00000484246 CDC42BPBQ9Y5S2 1711 aa25.07■■□□□ 1.6
UPF3A-208ENST00000484246 SCAPERQ9BY12 1400 aa25.07■■□□□ 1.6
UPF3A-208ENST00000484246 NCOA2Q15596 1464 aa25.06■■□□□ 1.6
UPF3A-208ENST00000484246 RAPGEF3O95398 923 aa25.05■■□□□ 1.6
UPF3A-208ENST00000484246 RICTORQ6R327 1708 aa25.05■■□□□ 1.6
UPF3A-208ENST00000484246 ABCC1P33527 1531 aa25.05■■□□□ 1.6
UPF3A-208ENST00000484246 SUPT6HQ7KZ85 1726 aaKnown RBP25.03■■□□□ 1.6
UPF3A-208ENST00000484246 MAGI2Q86UL8 1455 aa25.02■■□□□ 1.6
UPF3A-208ENST00000484246 ZNF518AQ6AHZ1 1483 aa25.01■■□□□ 1.59
UPF3A-208ENST00000484246 KANK4Q5T7N3 995 aaPredicted RBP25■■□□□ 1.59
UPF3A-208ENST00000484246 KDM5CP41229 1560 aa24.99■■□□□ 1.59
UPF3A-208ENST00000484246 PLEKHH2Q8IVE3 1493 aa24.99■■□□□ 1.59
UPF3A-208ENST00000484246 ITSN2Q9NZM3 1697 aa24.99■■□□□ 1.59
UPF3A-208ENST00000484246 KIAA1107Q9UPP5 1409 aa24.99■■□□□ 1.59
UPF3A-208ENST00000484246 SAMD9LQ8IVG5 1584 aa24.98■■□□□ 1.59
UPF3A-208ENST00000484246 ARHGEF40Q8TER5 1519 aa24.98■■□□□ 1.59
UPF3A-208ENST00000484246 APLP2Q06481 763 aa24.98■■□□□ 1.59
UPF3A-208ENST00000484246 CFDP1Q9UEE9 299 aaPredicted RBP24.98■■□□□ 1.59
UPF3A-208ENST00000484246 ARHGEF12Q9NZN5 1544 aa24.97■■□□□ 1.59
UPF3A-208ENST00000484246 TRAPPC8Q9Y2L5 1435 aa24.92■■□□□ 1.58
UPF3A-208ENST00000484246 ZFYVE16Q7Z3T8 1539 aa24.91■■□□□ 1.58
UPF3A-208ENST00000484246 SYCP2Q9BX26 1530 aa24.91■■□□□ 1.58
UPF3A-208ENST00000484246 MLH3Q9UHC1 1453 aa24.9■■□□□ 1.58
UPF3A-208ENST00000484246 MYOM3Q5VTT5 1437 aa24.88■■□□□ 1.57
UPF3A-208ENST00000484246 MIA2Q96PC5 1412 aa24.88■■□□□ 1.57
UPF3A-208ENST00000484246 YEATS2Q9ULM3 1422 aa24.88■■□□□ 1.57
UPF3A-208ENST00000484246 AFAP1Q8N556 730 aa24.87■■□□□ 1.57
UPF3A-208ENST00000484246 MBD5Q9P267 1494 aa24.87■■□□□ 1.57
UPF3A-208ENST00000484246 HECW2Q9P2P5 1572 aa24.87■■□□□ 1.57
UPF3A-208ENST00000484246 ZNF777Q9ULD5 760 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-208ENST00000484246 FOXD1Q16676 465 aa24.85■■□□□ 1.57
UPF3A-208ENST00000484246 CAMSAP2Q08AD1 1489 aa24.84■■□□□ 1.57
UPF3A-208ENST00000484246 PLPPR3Q6T4P5 718 aa24.84■■□□□ 1.57
UPF3A-208ENST00000484246 ZNF644Q9H582 1327 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-208ENST00000484246 REREQ9P2R6 1566 aa24.8■■□□□ 1.56
UPF3A-208ENST00000484246 C9orf84Q5VXU9 1444 aa24.8■■□□□ 1.56
UPF3A-208ENST00000484246 ATP10AO60312 1499 aa24.8■■□□□ 1.56
UPF3A-208ENST00000484246 KDM4FA0A1W2PPD8 638 aa24.79■■□□□ 1.56
UPF3A-208ENST00000484246 HNRNPMP52272 730 aaKnown RBP eCLIP24.79■■□□□ 1.56
UPF3A-208ENST00000484246 DIP2CQ9Y2E4 1556 aa24.79■■□□□ 1.56
UPF3A-208ENST00000484246 ARHGEF5Q12774 1597 aa24.78■■□□□ 1.56
UPF3A-208ENST00000484246 CCDC141Q6ZP82 1450 aa24.77■■□□□ 1.56
UPF3A-208ENST00000484246 INO80Q9ULG1 1556 aaPredicted RBP24.77■■□□□ 1.56
UPF3A-208ENST00000484246 RSPH4AQ5TD94 716 aa24.77■■□□□ 1.56
UPF3A-208ENST00000484246 ABCA6Q8N139 1617 aa24.75■■□□□ 1.55
UPF3A-208ENST00000484246 SPAG9O60271 1321 aaKnown RBP24.75■■□□□ 1.55
UPF3A-208ENST00000484246 FGD6Q6ZV73 1430 aa24.75■■□□□ 1.55
UPF3A-208ENST00000484246 KIDINS220Q9ULH0 1771 aa24.75■■□□□ 1.55
UPF3A-208ENST00000484246 RTEL1-TNFRSF6BF6WH68 1400 aa24.74■■□□□ 1.55
UPF3A-208ENST00000484246 ATP7AQ04656 1500 aa24.74■■□□□ 1.55
UPF3A-208ENST00000484246 TCOF1Q13428 1488 aaKnown RBP24.73■■□□□ 1.55
UPF3A-208ENST00000484246 AGLP35573 1532 aa24.71■■□□□ 1.55
UPF3A-208ENST00000484246 SIGLEC1Q9BZZ2 1709 aa24.69■■□□□ 1.54
UPF3A-208ENST00000484246 BCORL1Q5H9F3 1711 aa24.68■■□□□ 1.54
UPF3A-208ENST00000484246 PTPN23Q9H3S7 1636 aa24.68■■□□□ 1.54
UPF3A-208ENST00000484246 ADAMTSL3P82987 1691 aa24.67■■□□□ 1.54
UPF3A-208ENST00000484246 PLXNC1O60486 1568 aa24.65■■□□□ 1.54
UPF3A-208ENST00000484246 ILDR1Q86SU0 546 aaPredicted RBP24.65■■□□□ 1.54
UPF3A-208ENST00000484246 MAST1Q9Y2H9 1570 aa24.65■■□□□ 1.54
UPF3A-208ENST00000484246 MYT1LQ9UL68 1186 aa24.64■■□□□ 1.54
UPF3A-208ENST00000484246 SHANK2Q9UPX8 1470 aa24.64■■□□□ 1.53
UPF3A-208ENST00000484246 ARID4BQ4LE39 1312 aaPredicted RBP24.63■■□□□ 1.53
UPF3A-208ENST00000484246 A2MP01023 1474 aa24.62■■□□□ 1.53
UPF3A-208ENST00000484246 ABCC5O15440 1437 aa24.59■■□□□ 1.53
UPF3A-208ENST00000484246 TSPY4P0CV99 314 aa24.58■■□□□ 1.53
UPF3A-208ENST00000484246 TSPY10P0CW01 314 aa24.58■■□□□ 1.53
UPF3A-208ENST00000484246 DNMT1P26358 1616 aaKnown RBP24.57■■□□□ 1.52
UPF3A-208ENST00000484246 ADGBQ8N7X0 1667 aa24.57■■□□□ 1.52
UPF3A-208ENST00000484246 DAPK1P53355 1430 aa24.57■■□□□ 1.52
UPF3A-208ENST00000484246 MADDQ8WXG6 1647 aa24.57■■□□□ 1.52
UPF3A-208ENST00000484246 DHX29Q7Z478 1369 aaKnown RBP24.54■■□□□ 1.52
UPF3A-208ENST00000484246 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.54■■□□□ 1.52
UPF3A-208ENST00000484246 CROCC2H7BZ55 1655 aa24.53■■□□□ 1.52
UPF3A-208ENST00000484246 PTPRMP28827 1452 aa24.53■■□□□ 1.52
UPF3A-208ENST00000484246 ADGRL2O95490 1459 aa24.47■■□□□ 1.51
UPF3A-208ENST00000484246 RRBP1Q9P2E9 1410 aaKnown RBP24.47■■□□□ 1.51
UPF3A-208ENST00000484246 MLECQ14165 292 aa24.46■■□□□ 1.51
UPF3A-208ENST00000484246 CNTLNQ9NXG0 1405 aa24.45■■□□□ 1.51
UPF3A-208ENST00000484246 FER1L4A9Z1Z3 1794 aa24.44■■□□□ 1.5
UPF3A-208ENST00000484246 RIMS1Q86UR5 1692 aaKnown RBP24.44■■□□□ 1.5
UPF3A-208ENST00000484246 FAM50AQ14320 339 aaKnown RBP24.44■■□□□ 1.5
UPF3A-208ENST00000484246 DUOX2Q9NRD8 1548 aa24.44■■□□□ 1.5
UPF3A-208ENST00000484246 FAM135AQ9P2D6 1515 aa24.44■■□□□ 1.5
UPF3A-208ENST00000484246 PPARGC1BQ86YN6 1023 aaKnown RBP24.43■■□□□ 1.5
UPF3A-208ENST00000484246 PPP6R1Q9UPN7 881 aa24.43■■□□□ 1.5
UPF3A-208ENST00000484246 KIF15Q9NS87 1388 aa24.42■■□□□ 1.5
UPF3A-208ENST00000484246 ANKRD30AQ9BXX3 1397 aa24.42■■□□□ 1.5
UPF3A-208ENST00000484246 EIF2AK4Q9P2K8 1649 aaKnown RBP24.41■■□□□ 1.5
UPF3A-208ENST00000484246 NCOA1Q15788 1441 aa24.41■■□□□ 1.5
UPF3A-208ENST00000484246 ERBINQ96RT1 1412 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms